Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre12.g490650 Chlamydomonas reinhardtii HOM05D004969 ORTHO05D006085 3.9e-145 518.5 333 100.0
Cre12.g508000 Chlamydomonas reinhardtii HOM05D004969 ORTHO05D006085 5.7e-11 72.8 136 28.7
Os04g0439900 Oryza sativa ssp. japonica HOM05D004969 ORTHO05D006085 1.3e-10 71.6 140 28.6
Zm00001eb082230 Zea mays HOM05D004969 ORTHO05D006085 1.3e-10 71.6 140 28.6
VMungo0540G2242 Vigna mungo HOM05D004969 ORTHO05D006085 3.7e-10 70.1 152 27.0
MELO3C025065.2 Cucumis melo HOM05D004969 ORTHO05D006085 4.8e-10 69.7 138 30.4
CsaV3_5G020190 Cucumis sativus L. HOM05D004969 ORTHO05D006085 4.8e-10 69.7 138 30.4
Sed0015915 Sechium edule HOM05D004969 ORTHO05D006085 4.8e-10 69.7 138 30.4
Lj6g0017586 Lotus japonicus HOM05D004969 ORTHO05D006085 6.2e-10 69.3 177 26.0
Glyma.18G048200 Glycine max HOM05D004969 ORTHO05D006085 8.2e-10 68.9 138 27.5
Sc23g0001560 Simmondsia chinensis HOM05D004969 ORTHO05D006085 8.2e-10 68.9 168 26.8
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 1.1e-09 68.6 138 26.8
Medtr3g063200 Medicago truncatula HOM05D004969 ORTHO05D006085 1.1e-09 68.6 138 27.5
Ca_15098_v3 Cicer arietinum L. HOM05D004969 ORTHO05D006085 1.4e-09 68.2 138 27.5
Duzib133G0278 Durio zibethinus HOM05D004969 ORTHO05D006085 1.4e-09 68.2 138 26.8
Duzib211G0057 Durio zibethinus HOM05D004969 ORTHO05D006085 1.4e-09 68.2 138 26.8
MD07G1079600 Malus domestica HOM05D004969 ORTHO05D006085 1.4e-09 68.2 138 27.5
Phvul.006G083300 Phaseolus vulgaris HOM05D004969 ORTHO05D006085 1.4e-09 68.2 138 26.8
Thecc.04G114600 Theobroma cacao HOM05D004969 ORTHO05D006085 1.4e-09 68.2 138 26.8
Migut.N03359 Erythranthe guttata HOM05D004969 ORTHO05D006085 1.8e-09 67.8 138 29.0
Gohir.A07G077900 Gossypium hirsutum HOM05D004969 ORTHO05D006085 1.8e-09 67.8 138 26.8
Gohir.D07G082700 Gossypium hirsutum HOM05D004969 ORTHO05D006085 1.8e-09 67.8 138 26.8
Gorai.001G088300 Gossypium raimondii HOM05D004969 ORTHO05D006085 1.8e-09 67.8 138 26.8
Lalb_Chr18g0053961 Lupinus albus HOM05D004969 ORTHO05D006085 1.8e-09 67.8 138 27.5
Actinidia23029 Actinidia chinensis HOM05D004969 ORTHO05D006085 2.4e-09 67.4 138 27.5
Cc10_g11320 Coffea canephora HOM05D004969 ORTHO05D006085 2.4e-09 67.4 138 28.3
Glyma.11G202700 Glycine max HOM05D004969 ORTHO05D006085 2.4e-09 67.4 177 24.9
Psat5g144880 Pisum sativum HOM05D004969 ORTHO05D006085 2.4e-09 67.4 151 26.5
Eucgr.A02100 Eucalyptus grandis HOM05D004969 ORTHO05D006085 3.1e-09 67.0 138 27.5
MD02G1235900 Malus domestica HOM05D004969 ORTHO05D006085 3.1e-09 67.0 138 26.8
Pp3c26_4000 Physcomitrium patens HOM05D004969 ORTHO05D006085 3.1e-09 67.0 167 28.7
PGR042G0690 Punica granatum HOM05D004969 ORTHO05D006085 3.1e-09 67.0 138 27.5
Rhsim12G0005600 Rhododendron simsii HOM05D004969 ORTHO05D006085 3.1e-09 67.0 138 26.8
MSTRG.22462 Avicennia marina HOM05D004969 ORTHO05D006085 4.1e-09 66.6 138 29.0
CSS0003565 Camellia sinensis var. sinensis HOM05D004969 ORTHO05D006085 4.1e-09 66.6 138 26.8
Prupe.2G102700 Prunus persica HOM05D004969 ORTHO05D006085 4.1e-09 66.6 158 27.8
HPP92_004490 Vanilla planifolia HOM05D004969 ORTHO05D006085 4.1e-09 66.6 139 27.3
SMO367G0370 Selaginella moellendorffii HOM05D004969 ORTHO05D006085 5.3e-09 66.2 141 27.0
GSVIVG01025999001 Vitis vinifera HOM05D004969 ORTHO05D006085 5.3e-09 66.2 138 26.1
FvH4_7g07530 Fragaria vesca HOM05D004969 ORTHO05D006085 6.9e-09 65.9 140 27.9
FAN03G1223 Fragaria x ananassa HOM05D004969 ORTHO05D006085 6.9e-09 65.9 140 27.9
PSO017G0293 Papaver somniferum HOM05D004969 ORTHO05D006085 6.9e-09 65.9 138 26.8
Peaxi162Scf00391g00434 Petunia axillaris HOM05D004969 ORTHO05D006085 6.9e-09 65.9 167 25.1
CAN.G2.7 Capsicum annuum HOM05D004969 ORTHO05D006085 9.0e-09 65.5 138 26.8
Manes.02G076800 Manihot esculenta HOM05D004969 ORTHO05D006085 9.0e-09 65.5 144 27.1
PSO170G6732 Papaver somniferum HOM05D004969 ORTHO05D006085 9.0e-09 65.5 168 25.6
TAR381G0816 Trochodendron aralioides HOM05D004969 ORTHO05D006085 9.0e-09 65.5 157 24.8
HPP92_004464 Vanilla planifolia HOM05D004969 ORTHO05D006085 9.0e-09 65.5 139 26.6
MSTRG.1535 Avicennia marina HOM05D004969 ORTHO05D006085 1.2e-08 65.1 164 24.4
ECA247G1475 Erigeron canadensis HOM05D004969 ORTHO05D006085 1.2e-08 65.1 138 28.3
Lalb_Chr15g0085491 Lupinus albus HOM05D004969 ORTHO05D006085 1.2e-08 65.1 138 27.5
MBI06_g36481_MAGBIO Magnolia biondii HOM05D004969 ORTHO05D006085 1.2e-08 65.1 138 26.1
BolC2t06766H Brassica oleracea HOM05D004969 ORTHO05D006085 1.5e-08 64.7 140 27.1
BraA02t05337Z Brassica rapa HOM05D004969 ORTHO05D006085 1.5e-08 64.7 140 27.1
CARHR196580 Cardamine hirsuta HOM05D004969 ORTHO05D006085 1.5e-08 64.7 140 26.4
Cfa005580 Carpinus fangiana HOM05D004969 ORTHO05D006085 1.5e-08 64.7 142 26.8
HanXRQChr02g0036761 Helianthus annuus HOM05D004969 ORTHO05D006085 1.5e-08 64.7 161 27.3
Hma1.2p1_0342F.1_g130660 Hydrangea macrophylla HOM05D004969 ORTHO05D006085 1.5e-08 64.7 138 26.8
Nitab4.5_0000365g0150 Nicotiana tabacum HOM05D004969 ORTHO05D006085 1.5e-08 64.7 138 26.8
Nitab4.5_0003818g0050 Nicotiana tabacum HOM05D004969 ORTHO05D006085 1.5e-08 64.7 138 26.8
Potri.004G087100 Populus trichocarpa HOM05D004969 ORTHO05D006085 1.5e-08 64.7 138 26.1
RcHm_v2.0_Chr1g0339281 Rosa chinensis HOM05D004969 ORTHO05D006085 1.5e-08 64.7 140 27.1
Solyc11g020300.2 Solanum lycopersicum HOM05D004969 ORTHO05D006085 1.5e-08 64.7 138 26.8
Sopen11g010590 Solanum pennellii HOM05D004969 ORTHO05D006085 1.5e-08 64.7 138 26.8
PGSC0003DMG400023281 Solanum tuberosum HOM05D004969 ORTHO05D006085 1.5e-08 64.7 138 26.8
Aa31LG11G13030 Aethionema arabicum HOM05D004969 ORTHO05D006085 2.0e-08 64.3 140 26.4
AL6G27590 Arabidopsis lyrata HOM05D004969 ORTHO05D006085 2.0e-08 64.3 140 26.4
AT5G16620 Arabidopsis thaliana HOM05D004969 ORTHO05D006085 2.0e-08 64.3 140 26.4
Carub.0006s1483 Capsella rubella HOM05D004969 ORTHO05D006085 2.0e-08 64.3 140 26.4
Ciclev10011792m.g Citrus clementina HOM05D004969 ORTHO05D006085 2.0e-08 64.3 164 27.4
Pp3c4_25740 Physcomitrium patens HOM05D004969 ORTHO05D006085 2.0e-08 64.3 140 26.4
Aqoxy2G02250 Aquilegia oxysepala HOM05D004969 ORTHO05D006085 2.6e-08 63.9 138 26.1
HanXRQChr04g0102091 Helianthus annuus HOM05D004969 ORTHO05D006085 2.6e-08 63.9 138 28.3
TWI77G0063 Tripterygium wilfordii HOM05D004969 ORTHO05D006085 2.6e-08 63.9 138 26.1
BcaB08g36833 Brassica carinata HOM05D004969 ORTHO05D006085 3.4e-08 63.5 140 26.4
A10p22590 Brassica napus HOM05D004969 ORTHO05D006085 3.4e-08 63.5 140 26.4
BraA10t44321Z Brassica rapa HOM05D004969 ORTHO05D006085 3.4e-08 63.5 140 26.4
CSS0028019 Camellia sinensis var. sinensis HOM05D004969 ORTHO05D006085 3.4e-08 63.5 138 26.1
CANSAT78G2392 Cannabis sativa HOM05D004969 ORTHO05D006085 3.4e-08 63.5 172 25.6
Nn5g27434 Nelumbo nucifera HOM05D004969 ORTHO05D006085 3.4e-08 63.5 138 26.1
unitig_8.g3641 Utricularia gibba HOM05D004969 ORTHO05D006085 3.4e-08 63.5 148 27.7
C09p60500 Brassica napus HOM05D004969 ORTHO05D006085 4.5e-08 63.2 142 27.5
BolC9t58883H Brassica oleracea HOM05D004969 ORTHO05D006085 4.5e-08 63.2 142 27.5
Cpa.g.sc116.57 Carica papaya HOM05D004969 ORTHO05D006085 4.5e-08 63.2 138 25.4
Mapoly0007s0079 Marchantia polymorpha HOM05D004969 ORTHO05D006085 4.5e-08 63.2 138 26.8
THA.LOC104802933 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 4.5e-08 63.2 140 26.4
THA.LOC104827189 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 4.5e-08 63.2 170 25.3
CDE04G1977 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 5.8e-08 62.8 138 26.1
Potri.017G129800 Populus trichocarpa HOM05D004969 ORTHO05D006085 5.8e-08 62.8 139 25.9
Sabra17G0108000 Salix brachista HOM05D004969 ORTHO05D006085 5.8e-08 62.8 139 25.9
Sp6g27550 Schrenkiella parvula HOM05D004969 ORTHO05D006085 7.6e-08 62.4 138 25.4
Thhalv10013528m.g Eutrema salsugineum HOM05D004969 ORTHO05D006085 1.0e-07 62.0 138 25.4
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 1.3e-07 61.6 150 24.7
TWI53G0342 Tripterygium wilfordii HOM05D004969 ORTHO05D006085 1.3e-07 61.6 138 26.1
arahy.Tifrunner.gnm1.ann1.70N71I Arachis hypogaea HOM05D004969 ORTHO05D006085 1.7e-07 61.2 159 27.0
vmacro00973 Vaccinium macrocarpon HOM05D004969 ORTHO05D006085 5.0e-07 59.7 156 24.4
SEGI_27085 Sequoiadendron giganteum HOM05D004969 ORTHO05D006085 8.4e-07 58.9 127 25.2
CiPaw.06G151300 Carya illinoinensis HOM05D004969 ORTHO05D006085 1.1e-06 58.5 139 25.2
SGA_v2.0_scaffold25G11066 Striga asiatica HOM05D004969 ORTHO05D007712 1.9e-06 57.8 128 26.6
AagrBONN_evm.TU.Sc2ySwM_362.1764 Anthoceros agrestis HOM05D004969 ORTHO05D006085 3.2e-06 57.0 129 24.8
CBR_g49427 Chara braunii HOM05D004969 ORTHO05D006085 3.2e-06 57.0 129 25.6
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 4.2e-06 56.6 151 25.2
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 4.2e-06 56.6 151 25.2
Hund27125 Selenicereus undatus HOM05D004969 ORTHO05D006085 7.2e-06 55.8 68 38.2
Hund27130 Selenicereus undatus HOM05D004969 ORTHO05D006085 7.2e-06 55.8 68 38.2
FAN06G2886 Fragaria x ananassa HOM05D004969 ORTHO05D006085 9.3e-06 55.5 113 25.7


User provided reference genes

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