Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre12.g488500 Chlamydomonas reinhardtii HOM05D005397 ORTHO05D006493 0.0e+00 1390.2 910 100.0
CSS0019191 Camellia sinensis var. sinensis HOM05D005397 ORTHO05D006493 2.9e-25 121.7 528 27.7
SMO116G0264 Selaginella moellendorffii HOM05D005397 ORTHO05D006493 2.9e-25 121.7 340 28.5
Cc10_g02070 Coffea canephora HOM05D005397 ORTHO05D006493 4.9e-25 120.9 527 27.3
Actinidia29797 Actinidia chinensis HOM05D005397 ORTHO05D006493 6.5e-25 120.6 535 26.4
Phvul.001G009500 Phaseolus vulgaris HOM05D005397 ORTHO05D006493 3.2e-24 118.2 609 26.1
CBR_g40437 Chara braunii HOM05D005397 ORTHO05D006493 4.2e-24 117.9 340 28.5
CBR_g40449 Chara braunii HOM05D005397 ORTHO05D006493 4.2e-24 117.9 340 28.8
Oeu046246.1 Olea europaea HOM05D005397 ORTHO05D006493 4.2e-24 117.9 574 27.0
VMungo0647G1731 Vigna mungo HOM05D005397 ORTHO05D006493 5.5e-24 117.5 527 26.9
CiPaw.07G153900 Carya illinoinensis HOM05D005397 ORTHO05D006493 2.7e-23 115.2 551 26.3
HanXRQChr02g0041801 Helianthus annuus HOM05D005397 ORTHO05D006493 2.7e-23 115.2 239 35.1
Mapoly0064s0104 Marchantia polymorpha HOM05D005397 ORTHO05D006493 4.6e-23 114.4 352 30.4
PSO675G6273 Papaver somniferum HOM05D005397 ORTHO05D006493 6.0e-23 114.0 525 26.7
SGA_v2.0_scaffold11G05874 Striga asiatica HOM05D005397 ORTHO05D006493 1.0e-22 113.2 589 26.3
DCAR_017505 Daucus carota HOM05D005397 ORTHO05D006493 1.3e-22 112.8 627 25.4
Glyma.17G255300 Glycine max HOM05D005397 ORTHO05D006493 1.3e-22 112.8 522 26.4
QL02p010766 Quercus lobata HOM05D005397 ORTHO05D006493 1.3e-22 112.8 528 26.1
CANSAT78G0864 Cannabis sativa HOM05D005397 ORTHO05D006493 1.8e-22 112.5 538 25.5
Cfa013909 Carpinus fangiana HOM05D005397 ORTHO05D006493 2.3e-22 112.1 528 27.1
Dinv31812 Davidia involucrata HOM05D005397 ORTHO05D006493 2.3e-22 112.1 353 30.9
PSO541G6090 Papaver somniferum HOM05D005397 ORTHO05D006493 2.3e-22 112.1 531 26.4
Gorai.009G196600 Gossypium raimondii HOM05D005397 ORTHO05D006493 3.9e-22 111.3 338 29.9
Thecc.08G038000 Theobroma cacao HOM05D005397 ORTHO05D006493 5.1e-22 110.9 347 30.0
Rhsim07G0244600 Rhododendron simsii HOM05D005397 ORTHO05D006493 6.7e-22 110.5 355 30.4
Glyma.14G216700 Glycine max HOM05D005397 ORTHO05D006493 1.1e-21 109.8 354 31.4
Gohir.D05G191300 Gossypium hirsutum HOM05D005397 ORTHO05D006493 1.1e-21 109.8 338 29.6
Lsat_1_v5_gn_1_16260 Lactuca sativa HOM05D005397 ORTHO05D006493 1.1e-21 109.8 344 30.5
GSVIVG01022614001 Vitis vinifera HOM05D005397 ORTHO05D006493 1.1e-21 109.8 545 25.7
AagrBONN_evm.TU.Sc2ySwM_228.2424 Anthoceros agrestis HOM05D005397 ORTHO05D006493 1.5e-21 109.4 326 29.1
TWI12G0995 Tripterygium wilfordii HOM05D005397 ORTHO05D006493 1.5e-21 109.4 344 29.9
Lalb_Chr24g0398791 Lupinus albus HOM05D005397 ORTHO05D006493 1.9e-21 109.0 353 31.7
Prupe.1G370400 Prunus persica HOM05D005397 ORTHO05D006493 1.9e-21 109.0 349 28.9
SalBow7G0110 Salvia bowleyana HOM05D005397 ORTHO05D006493 1.9e-21 109.0 527 26.9
Sopen04g034690 Solanum pennellii HOM05D005397 ORTHO05D006493 1.9e-21 109.0 353 30.3
PGSC0003DMG400003765 Solanum tuberosum HOM05D005397 ORTHO05D006493 1.9e-21 109.0 353 30.3
Sed0023445 Sechium edule HOM05D005397 ORTHO05D006493 3.3e-21 108.2 346 29.5
Nitab4.5_0011205g0010 Nicotiana tabacum HOM05D005397 ORTHO05D006493 4.3e-21 107.8 350 29.1
HanXRQChr04g0106461 Helianthus annuus HOM05D005397 ORTHO05D006493 9.7e-21 106.7 248 34.3
arahy.Tifrunner.gnm1.ann1.WNU9KC Arachis hypogaea HOM05D005397 ORTHO05D006493 1.3e-20 106.3 371 30.7
EL10Ac1g00550 Beta vulgaris HOM05D005397 ORTHO05D006493 1.3e-20 106.3 535 25.6
ClCG08G014500 Citrullus lanatus HOM05D005397 ORTHO05D006493 1.3e-20 106.3 346 29.8
Migut.C00793 Erythranthe guttata HOM05D005397 ORTHO05D006493 1.3e-20 106.3 344 30.5
PGR083G1852 Punica granatum HOM05D005397 ORTHO05D006493 1.3e-20 106.3 527 26.2
Hund17223 Selenicereus undatus HOM05D005397 ORTHO05D006493 1.3e-20 106.3 237 34.6
MELO3C010989.2 Cucumis melo HOM05D005397 ORTHO05D006493 1.6e-20 105.9 351 29.3
Duzib093G1874 Durio zibethinus HOM05D005397 ORTHO05D006493 2.2e-20 105.5 338 29.0
Aqoxy6G02360 Aquilegia oxysepala HOM05D005397 ORTHO05D006493 2.8e-20 105.1 353 28.3
DCAR_013850 Daucus carota HOM05D005397 ORTHO05D006493 2.8e-20 105.1 347 29.4
vmacro04326 Vaccinium macrocarpon HOM05D005397 ORTHO05D006493 2.8e-20 105.1 349 28.1
Ca_13392_v3 Cicer arietinum L. HOM05D005397 ORTHO05D006493 4.8e-20 104.4 354 29.9
Atru.chr13.353 Acer truncatum HOM05D005397 ORTHO05D006493 6.3e-20 104.0 338 29.6
ATR0149G027 Amborella trichopoda HOM05D005397 ORTHO05D006493 6.3e-20 104.0 538 25.7
Lj5g0007176 Lotus japonicus HOM05D005397 ORTHO05D006493 6.3e-20 104.0 642 25.4
Peaxi162Scf00287g01315 Petunia axillaris HOM05D005397 ORTHO05D006493 6.3e-20 104.0 268 32.8
Actinidia37979 Actinidia chinensis HOM05D005397 ORTHO05D006493 8.2e-20 103.6 239 34.3
Pp3c22_12970 Physcomitrium patens HOM05D005397 ORTHO05D006493 8.2e-20 103.6 411 27.7
Cpa.g.sc140.23 Carica papaya HOM05D005397 ORTHO05D006493 1.1e-19 103.2 582 24.4
SEGI_32422 Sequoiadendron giganteum HOM05D005397 ORTHO05D006493 1.1e-19 103.2 542 23.6
CsaV3_2G029290 Cucumis sativus L. HOM05D005397 ORTHO05D006493 1.4e-19 102.8 342 28.9
Lj4A791T82 Lonicera japonica HOM05D005397 ORTHO05D006493 1.4e-19 102.8 241 34.4
Solyc04g081070.3 Solanum lycopersicum HOM05D005397 ORTHO05D006493 1.4e-19 102.8 353 29.7
AUR62019159 Chenopodium quinoa HOM05D005397 ORTHO05D006493 1.8e-19 102.4 505 26.1
AUR62034574 Chenopodium quinoa HOM05D005397 ORTHO05D006493 1.8e-19 102.4 505 26.1
FAN15G0228 Fragaria x ananassa HOM05D005397 ORTHO05D006493 1.8e-19 102.4 526 25.5
Medtr1g023310 Medicago truncatula HOM05D005397 ORTHO05D006493 1.8e-19 102.4 531 26.0
Pp3c21_1260 Physcomitrium patens HOM05D005397 ORTHO05D006493 1.8e-19 102.4 335 28.1
BcaC06g31756 Brassica carinata HOM05D005397 ORTHO05D006493 2.4e-19 102.1 370 28.6
Eucgr.F01622 Eucalyptus grandis HOM05D005397 ORTHO05D006493 2.4e-19 102.1 351 30.8
AL8G18860 Arabidopsis lyrata HOM05D005397 ORTHO05D006493 4.1e-19 101.3 364 28.3
RcHm_v2.0_Chr6g0302171 Rosa chinensis HOM05D005397 ORTHO05D006493 4.1e-19 101.3 527 25.0
AT5G42480 Arabidopsis thaliana HOM05D005397 ORTHO05D006493 5.3e-19 100.9 364 28.8
A06p48310 Brassica napus HOM05D005397 ORTHO05D006493 9.0e-19 100.1 367 29.2
THA.LOC104810654 Tarenaya hassleriana HOM05D005397 ORTHO05D006493 1.2e-18 99.8 347 27.7
Carub.0008s0657 Capsella rubella HOM05D005397 ORTHO05D006493 1.5e-18 99.4 364 28.3
Haze_22588 Corylus avellana HOM05D005397 ORTHO05D006493 1.5e-18 99.4 525 25.9
Nn5g29235 Nelumbo nucifera HOM05D005397 ORTHO05D006493 1.5e-18 99.4 521 24.8
BraA06t27701Z Brassica rapa HOM05D005397 ORTHO05D006493 2.0e-18 99.0 364 29.1
CARHR181880 Cardamine hirsuta HOM05D005397 ORTHO05D006493 2.0e-18 99.0 370 28.1
ECA247G2991 Erigeron canadensis HOM05D005397 ORTHO05D006493 2.0e-18 99.0 348 29.3
Thhalv10003151m.g Eutrema salsugineum HOM05D005397 ORTHO05D006493 2.0e-18 99.0 364 28.0
FvH4_2g39070 Fragaria vesca HOM05D005397 ORTHO05D006493 2.0e-18 99.0 237 33.8
FAN20G2387 Fragaria x ananassa HOM05D005397 ORTHO05D006493 2.0e-18 99.0 237 33.3
Lalb_Chr14g0369691 Lupinus albus HOM05D005397 ORTHO05D006493 2.0e-18 99.0 354 30.5
AUR62014423 Chenopodium quinoa HOM05D005397 ORTHO05D006493 4.5e-18 97.8 507 26.2
Potri.005G235000 Populus trichocarpa HOM05D005397 ORTHO05D006493 5.9e-18 97.4 338 29.3
COL.COLO4_26194 Corchorus olitorius HOM05D005397 ORTHO05D006493 7.6e-18 97.1 333 30.9
Sp2g06890 Schrenkiella parvula HOM05D005397 ORTHO05D006493 7.6e-18 97.1 370 27.6
SpUn0014_0040 Schrenkiella parvula HOM05D005397 ORTHO05D006493 7.6e-18 97.1 370 27.6
SpUn0090_0020 Schrenkiella parvula HOM05D005397 ORTHO05D006493 7.6e-18 97.1 370 27.6
BcaC02g10766 Brassica carinata HOM05D005397 ORTHO05D006493 1.0e-17 96.7 370 28.4
C04p25360 Brassica napus HOM05D005397 ORTHO05D006493 1.0e-17 96.7 370 28.4
BolC4t24042H Brassica oleracea HOM05D005397 ORTHO05D006493 1.0e-17 96.7 370 28.4
PRCOL_00000058 Prasinoderma coloniale HOM05D005397 ORTHO05D006493 1.0e-17 96.7 528 25.4
unitig_26.g9841 Utricularia gibba HOM05D005397 ORTHO05D006493 1.0e-17 96.7 522 24.5
Manes.18G017200 Manihot esculenta HOM05D005397 ORTHO05D006493 1.3e-17 96.3 239 32.6
Psat6g005320 Pisum sativum HOM05D005397 ORTHO05D006493 1.3e-17 96.3 532 26.1
TAR625G0278 Trochodendron aralioides HOM05D005397 ORTHO05D006493 1.3e-17 96.3 238 31.9
Aa31LG9G12600 Aethionema arabicum HOM05D005397 ORTHO05D006493 2.2e-17 95.5 349 28.1
Sabra05G0181200 Salix brachista HOM05D005397 ORTHO05D006493 6.5e-17 94.0 338 29.3
CDE05G0602 Ceratophyllum demersum HOM05D005397 ORTHO05D006493 7.2e-16 90.5 349 26.9
MD15G1016900 Malus domestica HOM05D005397 ORTHO05D006493 9.3e-16 90.1 147 37.4
arahy.Tifrunner.gnm1.ann1.FP07R2 Arachis hypogaea HOM05D005397 ORTHO05D006493 1.2e-15 89.7 407 27.3
FAN27G0831 Fragaria x ananassa HOM05D005397 ORTHO05D006493 7.9e-15 87.0 237 31.6
Zm00001eb208440 Zea mays HOM05D005397 ORTHO05D006493 1.0e-14 86.7 338 26.6
Gohir.A05G188160 Gossypium hirsutum HOM05D005397 ORTHO05D006493 1.4e-14 86.3 147 37.4
Ciclev10000372m.g Citrus clementina HOM05D005397 ORTHO05D006493 5.1e-14 84.3 134 38.8
MSTRG.1222 Avicennia marina HOM05D005397 ORTHO05D006493 5.7e-13 80.9 163 36.2
TAR145G0001 Trochodendron aralioides HOM05D005397 ORTHO05D006493 3.7e-12 78.2 160 33.1
SEGI_15423 Sequoiadendron giganteum HOM05D005397 ORTHO05D006493 1.7e-09 69.3 166 29.5
PRCOL_00002524 Prasinoderma coloniale HOM05D005397 ORTHO05D006493 3.8e-09 68.2 352 27.0
unitig_26.g10113 Utricularia gibba HOM05D001982 ORTHO05D008035 8.5e-09 67.0 245 27.8
HPP92_022425 Vanilla planifolia HOM05D005397 ORTHO05D006493 8.5e-09 67.0 284 27.1
Oeu038398.1 Olea europaea HOM05D001982 ORTHO05D008035 1.4e-08 66.2 268 28.4
ECA232G1526 Erigeron canadensis HOM05D001982 ORTHO05D008035 2.5e-08 65.5 255 27.1
GSVIVG01029333001 Vitis vinifera HOM05D001982 ORTHO05D008035 2.5e-08 65.5 290 29.0
AUR62008507 Chenopodium quinoa HOM05D001982 ORTHO05D008035 3.2e-08 65.1 267 29.2
EL10Ac5g11111 Beta vulgaris HOM05D001982 ORTHO05D008035 4.2e-08 64.7 251 27.1
Phvul.004G139200 Phaseolus vulgaris HOM05D001982 ORTHO05D008035 5.5e-08 64.3 242 27.7
AUR62021583 Chenopodium quinoa HOM05D001982 ORTHO05D008035 7.2e-08 63.9 267 29.2
HanXRQChr16g0503331 Helianthus annuus HOM05D001982 ORTHO05D008035 7.2e-08 63.9 383 24.3
Sp3g17250 Schrenkiella parvula HOM05D001982 ORTHO05D008035 7.2e-08 63.9 241 28.6
THA.LOC104818545 Tarenaya hassleriana HOM05D001982 ORTHO05D008035 7.2e-08 63.9 249 28.1
Lsat_1_v5_gn_0_10501 Lactuca sativa HOM05D001982 ORTHO05D008035 1.2e-07 63.2 273 26.7
Lalb_Chr22g0353981 Lupinus albus HOM05D001982 ORTHO05D008035 1.6e-07 62.8 303 26.7
Potri.015G028101 Populus trichocarpa HOM05D001982 ORTHO05D008035 2.1e-07 62.4 236 29.2
PGR083G0482 Punica granatum HOM05D001982 ORTHO05D008035 2.1e-07 62.4 293 28.0
COL.COLO4_24905 Corchorus olitorius HOM05D001982 ORTHO05D008035 2.7e-07 62.0 281 24.9
TPR.G30667 Trifolium pratense HOM05D000043 ORTHO05D006493 2.7e-07 62.0 105 39.0
CANSAT64G0368 Cannabis sativa HOM05D001982 ORTHO05D008035 3.6e-07 61.6 258 27.5
Dinv09728 Davidia involucrata HOM05D001982 ORTHO05D008035 3.6e-07 61.6 263 28.1
Glyma.09G164700 Glycine max HOM05D001982 ORTHO05D008035 3.6e-07 61.6 243 26.7
Carub.0003s1900 Capsella rubella HOM05D001982 ORTHO05D008035 4.7e-07 61.2 241 27.8
Glyma.16G213100 Glycine max HOM05D001982 ORTHO05D008035 4.7e-07 61.2 243 26.3
Medtr6g077830 Medicago truncatula HOM05D001982 ORTHO05D008035 4.7e-07 61.2 237 28.7
Nitab4.5_0000782g0080 Nicotiana tabacum HOM05D001982 ORTHO05D008035 4.7e-07 61.2 249 27.3
Ah.11g047950 Amaranthus hybridus HOM05D001982 ORTHO05D008035 6.1e-07 60.8 239 27.2
Sabra15G0023200 Salix brachista HOM05D001982 ORTHO05D008035 6.1e-07 60.8 236 28.8
SalBow5G3030 Salvia bowleyana HOM05D001982 ORTHO05D008035 6.1e-07 60.8 270 27.4
CARHR094580 Cardamine hirsuta HOM05D001982 ORTHO05D008035 7.9e-07 60.5 242 27.3
Eucgr.H00644 Eucalyptus grandis HOM05D001982 ORTHO05D008035 7.9e-07 60.5 237 27.4
Gorai.007G350000 Gossypium raimondii HOM05D001982 ORTHO05D008035 7.9e-07 60.5 255 25.5
Lalb_Chr14g0370231 Lupinus albus HOM05D001982 ORTHO05D008035 7.9e-07 60.5 235 28.1
Psat1g121960 Pisum sativum HOM05D001982 ORTHO05D008035 7.9e-07 60.5 237 27.8
TPR.G19890 Trifolium pratense HOM05D001982 ORTHO05D008035 7.9e-07 60.5 237 27.8
VMungo0464G1225 Vigna mungo HOM05D001982 ORTHO05D008035 1.0e-06 60.1 303 26.1
AL3G32550 Arabidopsis lyrata HOM05D001982 ORTHO05D008035 1.4e-06 59.7 241 27.8
Duzib128G1857 Durio zibethinus HOM05D001982 ORTHO05D008035 1.4e-06 59.7 281 23.8
Thhalv10020089m.g Eutrema salsugineum HOM05D001982 ORTHO05D008035 1.4e-06 59.7 241 28.2
FvH4_5g18390 Fragaria vesca HOM05D001982 ORTHO05D008035 1.4e-06 59.7 232 26.7
Hma1.2p1_0493F.1_g164870 Hydrangea macrophylla HOM05D001982 ORTHO05D008035 1.4e-06 59.7 263 27.4
MELO3C025039.2 Cucumis melo HOM05D001982 ORTHO05D008035 1.8e-06 59.3 241 27.8
Nitab4.5_0003040g0110 Nicotiana tabacum HOM05D001982 ORTHO05D008035 1.8e-06 59.3 249 27.3
Hund02599 Selenicereus undatus HOM05D001982 ORTHO05D008035 1.8e-06 59.3 252 24.6
CSS0020955 Camellia sinensis var. sinensis HOM05D001982 ORTHO05D008035 2.3e-06 58.9 232 28.4
CsaV3_6G002460 Cucumis sativus L. HOM05D001982 ORTHO05D008035 2.3e-06 58.9 241 27.4
Gohir.D11G319900 Gossypium hirsutum HOM05D001982 ORTHO05D008035 2.3e-06 58.9 255 25.1
AT3G19180 Arabidopsis thaliana HOM05D001982 ORTHO05D008035 3.9e-06 58.2 240 27.5
Ca_11834_v3 Cicer arietinum L. HOM05D001982 ORTHO05D008035 3.9e-06 58.2 312 26.0
Sc04g0004520 Simmondsia chinensis HOM05D001982 ORTHO05D008035 3.9e-06 58.2 268 26.1
Sc04g0004660 Simmondsia chinensis HOM05D001982 ORTHO05D008035 3.9e-06 58.2 257 24.1
arahy.Tifrunner.gnm1.ann1.60FNUJ Arachis hypogaea HOM05D001982 ORTHO05D008035 5.1e-06 57.8 237 27.0
Gohir.A11G304500 Gossypium hirsutum HOM05D001982 ORTHO05D008035 5.1e-06 57.8 255 25.1
Zm00001eb066330 Zea mays HOM05D001982 ORTHO05D008035 5.1e-06 57.8 243 28.4
PSO782G2505 Papaver somniferum HOM05D001982 ORTHO05D008035 6.7e-06 57.4 291 26.8
Thecc.05G197300 Theobroma cacao HOM05D001982 ORTHO05D008035 6.7e-06 57.4 239 27.2
BcaB06g25974 Brassica carinata HOM05D001982 ORTHO05D008035 8.8e-06 57.0 241 28.2
FAN08G1981 Fragaria x ananassa HOM05D001982 ORTHO05D008035 8.8e-06 57.0 232 26.3
Manes.02G218300 Manihot esculenta HOM05D001982 ORTHO05D008035 8.8e-06 57.0 237 28.7
PSO063G1521 Papaver somniferum HOM05D001982 ORTHO05D008035 8.8e-06 57.0 237 27.8
Potri.012G035900 Populus trichocarpa HOM05D001982 ORTHO05D008035 8.8e-06 57.0 237 28.3
Prupe.5G243600 Prunus persica HOM05D001982 ORTHO05D008035 8.8e-06 57.0 232 25.4
RcHm_v2.0_Chr7g0177091 Rosa chinensis HOM05D001982 ORTHO05D008035 8.8e-06 57.0 232 25.9


User provided reference genes

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