Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre12.g486551 Chlamydomonas reinhardtii HOM05D005922 ORTHO05D006934 1.2e-270 936.4 650 100.0
AL2G26830 Arabidopsis lyrata HOM05D005922 ORTHO05D006934 1.9e-42 178.3 193 47.2
Lj3A860T49 Lonicera japonica HOM05D005922 ORTHO05D006934 1.9e-42 178.3 192 45.8
BcaB03g15398 Brassica carinata HOM05D005922 ORTHO05D006934 5.4e-42 176.8 191 46.1
C06p37940 Brassica napus HOM05D005922 ORTHO05D006934 5.4e-42 176.8 205 45.4
Thhalv10018688m.g Eutrema salsugineum HOM05D005922 ORTHO05D006934 5.4e-42 176.8 191 46.1
BcaC08g45999 Brassica carinata HOM05D005922 ORTHO05D006934 7.1e-42 176.4 205 45.4
BolC6t38893H Brassica oleracea HOM05D005922 ORTHO05D006934 7.1e-42 176.4 205 45.4
HanXRQChr17g0566161 Helianthus annuus HOM05D005922 ORTHO05D006934 2.1e-41 174.9 196 44.4
Pp3c27_7680 Physcomitrium patens HOM05D005922 ORTHO05D006934 2.7e-41 174.5 230 43.5
EL10Ac6g14554 Beta vulgaris HOM05D005922 ORTHO05D006934 6.0e-41 173.3 209 43.5
Potri.008G139000 Populus trichocarpa HOM05D005922 ORTHO05D006934 1.0e-40 172.6 200 46.0
ATR0598G299 Amborella trichopoda HOM05D005922 ORTHO05D006934 1.3e-40 172.2 185 45.9
Migut.L00620 Erythranthe guttata HOM05D005922 ORTHO05D006934 1.3e-40 172.2 189 45.5
Sp5g23080 Schrenkiella parvula HOM05D005922 ORTHO05D006934 1.3e-40 172.2 194 44.3
Lsat_1_v5_gn_4_23861 Lactuca sativa HOM05D005922 ORTHO05D006934 1.7e-40 171.8 196 43.9
Carub.0002s1456 Capsella rubella HOM05D005922 ORTHO05D006934 2.3e-40 171.4 220 43.2
Ciclev10015473m.g Citrus clementina HOM05D005922 ORTHO05D006934 2.3e-40 171.4 188 46.8
ECA234G0994 Erigeron canadensis HOM05D005922 ORTHO05D006934 3.0e-40 171.0 190 45.8
Sabra08G0105600 Salix brachista HOM05D005922 ORTHO05D006934 3.0e-40 171.0 193 45.6
Aqoxy3G04113 Aquilegia oxysepala HOM05D005922 ORTHO05D006934 3.9e-40 170.6 184 46.7
MSTRG.418 Avicennia marina HOM05D005922 ORTHO05D006934 5.1e-40 170.2 191 45.5
A07p32170 Brassica napus HOM05D005922 ORTHO05D006934 6.6e-40 169.9 205 44.4
DCAR_026820 Daucus carota HOM05D005922 ORTHO05D006934 6.6e-40 169.9 192 44.3
PGSC0003DMG400022790 Solanum tuberosum HOM05D005922 ORTHO05D006934 6.6e-40 169.9 193 44.6
unitig_748.g7591 Utricularia gibba HOM05D005922 ORTHO05D006934 8.7e-40 169.5 188 46.8
CiPaw.06G059000 Carya illinoinensis HOM05D005922 ORTHO05D006934 1.9e-39 168.3 203 46.8
Lj4g0028223 Lotus japonicus HOM05D005922 ORTHO05D006934 1.9e-39 168.3 208 43.3
SGA_v2.0_scaffold57G20105 Striga asiatica HOM05D005922 ORTHO05D006934 1.9e-39 168.3 193 46.1
Nn4g24501 Nelumbo nucifera HOM05D005922 ORTHO05D006934 4.3e-39 167.2 197 44.2
PSO017G1338 Papaver somniferum HOM05D005922 ORTHO05D006934 4.3e-39 167.2 187 46.0
Solyc01g005100.4 Solanum lycopersicum HOM05D005922 ORTHO05D006934 5.6e-39 166.8 192 42.7
Sopen01g001120 Solanum pennellii HOM05D005922 ORTHO05D006934 5.6e-39 166.8 192 42.7
AUR62002964 Chenopodium quinoa HOM05D005922 ORTHO05D006934 7.3e-39 166.4 205 43.4
MELO3C020028.2 Cucumis melo HOM05D005922 ORTHO05D006934 7.3e-39 166.4 189 46.0
GSVIVG01011600001 Vitis vinifera HOM05D005922 ORTHO05D006934 7.3e-39 166.4 184 45.1
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 9.6e-39 166.0 199 42.7
Dinv14365 Davidia involucrata HOM05D001297 ORTHO05D001135 9.6e-39 166.0 193 45.6
Gohir.D04G188200 Gossypium hirsutum HOM05D005922 ORTHO05D006934 9.6e-39 166.0 185 45.4
CsaV3_5G013220 Cucumis sativus L. HOM05D005922 ORTHO05D006934 1.3e-38 165.6 202 45.0
Sc10g0003730 Simmondsia chinensis HOM05D005922 ORTHO05D006934 1.3e-38 165.6 188 45.2
BraA07t30847Z Brassica rapa HOM05D005922 ORTHO05D006934 1.6e-38 165.2 205 43.9
TAR622G0311 Trochodendron aralioides HOM05D005922 ORTHO05D006934 2.1e-38 164.9 244 39.8
THA.LOC104809799 Tarenaya hassleriana HOM05D005922 ORTHO05D006934 3.6e-38 164.1 203 45.3
AUR62007770 Chenopodium quinoa HOM05D005922 ORTHO05D006934 4.8e-38 163.7 224 42.0
PSO478G3575 Papaver somniferum HOM05D005922 ORTHO05D006934 4.8e-38 163.7 186 46.8
Rhsim09G0086000 Rhododendron simsii HOM05D005922 ORTHO05D006934 4.8e-38 163.7 222 41.0
Manes.17G088400 Manihot esculenta HOM05D005922 ORTHO05D006934 6.2e-38 163.3 197 44.2
Actinidia20108 Actinidia chinensis HOM05D005922 ORTHO05D006934 8.1e-38 162.9 229 42.4
CAN.G282.103 Capsicum annuum HOM05D005922 ORTHO05D006934 1.1e-37 162.5 192 42.7
Os03g0238700 Oryza sativa ssp. japonica HOM05D005922 ORTHO05D006934 1.1e-37 162.5 188 45.7
Phvul.002G181600 Phaseolus vulgaris HOM05D005922 ORTHO05D006934 1.1e-37 162.5 188 43.6
FAN17G1819 Fragaria x ananassa HOM05D005922 ORTHO05D006934 1.4e-37 162.2 192 43.8
Gorai.012G183700 Gossypium raimondii HOM05D005922 ORTHO05D006934 1.4e-37 162.2 185 44.9
TWI74G0639 Tripterygium wilfordii HOM05D005922 ORTHO05D006934 1.8e-37 161.8 188 45.2
Eucgr.B02658 Eucalyptus grandis HOM05D005922 ORTHO05D006934 3.1e-37 161.0 219 42.0
FvH4_4g33040 Fragaria vesca HOM05D005922 ORTHO05D006934 5.3e-37 160.2 192 43.8
PGR102G1589 Punica granatum HOM05D005922 ORTHO05D006934 6.9e-37 159.8 200 43.5
FAN12G4156 Fragaria x ananassa HOM05D005922 ORTHO05D006934 9.0e-37 159.5 192 43.2
FAN07G1633 Fragaria x ananassa HOM05D005922 ORTHO05D006934 1.5e-36 158.7 192 43.2
Psat7g084400 Pisum sativum HOM05D005922 ORTHO05D006934 1.5e-36 158.7 187 43.3
Cc11_g05840 Coffea canephora HOM05D005922 ORTHO05D006934 2.0e-36 158.3 220 43.2
arahy.Tifrunner.gnm1.ann1.DV72QU Arachis hypogaea HOM05D005922 ORTHO05D006934 3.4e-36 157.5 215 40.9
FAN22G1644 Fragaria x ananassa HOM05D005922 ORTHO05D006934 4.4e-36 157.1 199 42.7
Lalb_Chr13g0293631 Lupinus albus HOM05D005922 ORTHO05D006934 5.8e-36 156.8 188 42.6
QL03p038994 Quercus lobata HOM05D005922 ORTHO05D006934 9.9e-36 156.0 217 40.6
Sed0026869 Sechium edule HOM05D005922 ORTHO05D006934 1.3e-35 155.6 202 42.1
TPR.G5128 Trifolium pratense HOM05D005922 ORTHO05D006934 2.2e-35 154.8 191 41.4
AagrBONN_evm.TU.Sc2ySwM_117.2043 Anthoceros agrestis HOM05D005922 ORTHO05D006934 2.9e-35 154.5 223 39.9
CSS0049283 Camellia sinensis var. sinensis HOM05D005922 ORTHO05D006934 2.9e-35 154.5 225 42.7
Ca_11580_v3 Cicer arietinum L. HOM05D005922 ORTHO05D006934 3.8e-35 154.1 188 42.6
RcHm_v2.0_Chr4g0442081 Rosa chinensis HOM05D005922 ORTHO05D006934 4.9e-35 153.7 217 40.6
Gohir.A04G143900 Gossypium hirsutum HOM05D005922 ORTHO05D006934 8.4e-35 152.9 207 40.6
Hund05787 Selenicereus undatus HOM05D005922 ORTHO05D006934 8.4e-35 152.9 230 38.3
Glyma.08G093700 Glycine max HOM05D005922 ORTHO05D006934 1.4e-34 152.1 165 46.7
MD16G1013700 Malus domestica HOM05D005922 ORTHO05D006934 1.9e-34 151.8 214 41.1
MBI19_g25220_MAGBIO Magnolia biondii HOM05D005922 ORTHO05D006934 2.7e-33 147.9 193 41.5
Cfa015069 Carpinus fangiana HOM05D005922 ORTHO05D006934 6.0e-33 146.7 195 44.1
CBR_g16882 Chara braunii HOM05D005922 ORTHO05D006934 1.3e-30 139.0 123 55.3
Mapoly0075s0019 Marchantia polymorpha HOM05D005922 ORTHO05D006934 2.1e-30 138.3 132 50.8
Atru.chr11.736 Acer truncatum HOM05D005922 ORTHO05D006934 2.8e-30 137.9 164 43.9
Duzib248G0719 Durio zibethinus HOM05D005922 ORTHO05D006934 2.8e-30 137.9 191 40.8
ClCG11G001170 Citrullus lanatus HOM05D005922 ORTHO05D006934 8.1e-30 136.3 202 40.6
BcaC08g45997 Brassica carinata HOM05D005922 ORTHO05D006934 1.1e-29 136.0 126 49.2
SHI04278 Sapria himalayana HOM05D005922 ORTHO05D006934 1.1e-29 136.0 223 38.1
Nitab4.5_0000521g0110 Nicotiana tabacum HOM05D005922 ORTHO05D006934 1.2e-28 132.5 292 31.5
Haze_10819 Corylus avellana HOM05D005922 ORTHO05D006934 2.0e-28 131.7 188 41.5
Prupe.1G337400 Prunus persica HOM05D005922 ORTHO05D006934 2.1e-25 121.7 214 36.9
arahy.Tifrunner.gnm1.ann1.05ZMZX Arachis hypogaea HOM05D005922 ORTHO05D006934 2.7e-25 121.3 143 44.1
COL.COLO4_27589 Corchorus olitorius HOM05D005922 ORTHO05D006934 6.0e-25 120.2 141 46.1
CSS0037760 Camellia sinensis var. sinensis HOM05D005922 ORTHO05D006934 3.0e-24 117.9 224 36.2
Nitab4.5_0001294g0040 Nicotiana tabacum HOM05D005922 ORTHO05D006934 7.4e-23 113.2 165 33.9
Nitab4.5_0001935g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 2.1e-22 111.7 200 34.0
PRCOL_00005504 Prasinoderma coloniale HOM05D005922 ORTHO05D006934 2.8e-22 111.3 211 39.8
SalBow7G4797 Salvia bowleyana HOM05D005922 ORTHO05D006934 2.8e-22 111.3 212 35.4
CDE05G0039 Ceratophyllum demersum HOM05D005922 ORTHO05D006934 3.7e-22 110.9 185 35.1
VMungo0251G3333 Vigna mungo HOM05D005922 ORTHO05D006934 4.8e-22 110.5 95 53.7
Ah.03g138110 Amaranthus hybridus HOM05D005922 ORTHO05D006934 1.8e-21 108.6 192 34.9
AT1G68080 Arabidopsis thaliana HOM05D005922 ORTHO05D006934 1.8e-21 108.6 126 43.7
Glyma.05G138500 Glycine max HOM05D005922 ORTHO05D006934 1.8e-21 108.6 175 36.0
BcaB05g23450 Brassica carinata HOM05D005922 ORTHO05D006934 5.3e-21 107.1 107 47.7
Cpa.g.sc2.132 Carica papaya HOM05D005922 ORTHO05D006934 6.9e-21 106.7 126 42.9
SEGI_26303 Sequoiadendron giganteum HOM05D005922 ORTHO05D006934 9.0e-21 106.3 127 40.9
CANSAT78G1412 Cannabis sativa HOM05D005922 ORTHO05D006934 9.3e-18 96.3 197 33.5
Nitab4.5_0001294g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 5.7e-15 87.0 150 34.0
Oeu034664.1 Olea europaea HOM05D005922 ORTHO05D006934 3.7e-14 84.3 106 40.6
HPP92_016714 Vanilla planifolia HOM05D005922 ORTHO05D006934 3.1e-13 81.3 82 51.2
arahy.Tifrunner.gnm1.ann1.F0VD4J Arachis hypogaea HOM05D005922 ORTHO05D006934 4.1e-13 80.9 75 49.3
CARHR060740 Cardamine hirsuta HOM05D005922 ORTHO05D006934 6.9e-13 80.1 84 47.6
arahy.Tifrunner.gnm1.ann1.P482X0 Arachis hypogaea HOM05D005922 ORTHO05D006934 6.5e-11 73.6 102 37.3
BcaB02g11286 Brassica carinata HOM05D005922 ORTHO05D006934 1.1e-10 72.8 106 36.8
Thecc.02G304700 Theobroma cacao HOM05D005922 ORTHO05D006934 1.4e-10 72.4 69 53.6
Manes.18G025338 Manihot esculenta HOM05D005922 ORTHO05D006934 6.7e-08 63.5 95 40.0
arahy.Tifrunner.gnm1.ann1.39MP9Z Arachis hypogaea HOM05D002181 ORTHO05D003287 7.4e-07 60.1 60 46.7
arahy.Tifrunner.gnm1.ann1.XTWJ7M Arachis hypogaea HOM05D002181 ORTHO05D006934 1.3e-06 59.3 58 48.3


User provided reference genes

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