Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre11.g481500 Chlamydomonas reinhardtii HOM05D004902 ORTHO05D006603 4.1e-252 874.4 484 100.0
Mapoly0071s0086 Marchantia polymorpha HOM05D004902 ORTHO05D006603 2.5e-140 503.1 579 50.3
AagrBONN_evm.TU.Sc2ySwM_117.3547 Anthoceros agrestis HOM05D004902 ORTHO05D006603 6.1e-139 498.4 593 50.6
MCO02G311 Micromonas commoda HOM05D004902 ORTHO05D006603 1.8e-138 496.9 581 50.4
CBR_g4356 Chara braunii HOM05D004902 ORTHO05D006603 5.1e-138 495.4 591 50.4
Pp3c1_20280 Physcomitrium patens HOM05D004902 ORTHO05D006603 1.1e-135 487.6 580 50.0
Os03g0256400 Oryza sativa ssp. japonica HOM05D004902 ORTHO05D006603 4.1e-135 485.7 587 49.4
Aqoxy5G00324 Aquilegia oxysepala HOM05D004902 ORTHO05D006603 1.2e-134 484.2 557 50.3
Lj4g0024994 Lotus japonicus HOM05D004902 ORTHO05D006603 1.2e-134 484.2 556 50.2
Psat5g177120 Pisum sativum HOM05D004902 ORTHO05D006603 1.5e-134 483.8 571 50.3
TPR.G33794 Trifolium pratense HOM05D004902 ORTHO05D006603 4.5e-134 482.3 571 50.1
Ca_14752_v3 Cicer arietinum L. HOM05D004902 ORTHO05D006603 7.7e-134 481.5 571 49.6
Glyma.18G108300 Glycine max HOM05D004902 ORTHO05D006603 7.7e-134 481.5 566 50.0
Phvul.006G046400 Phaseolus vulgaris HOM05D004902 ORTHO05D006603 1.3e-133 480.7 556 50.5
C04p45770 Brassica napus HOM05D004902 ORTHO05D006603 2.2e-133 479.9 556 48.6
Carub.0007s1395 Capsella rubella HOM05D004902 ORTHO05D006603 2.2e-133 479.9 561 48.7
Medtr3g052850 Medicago truncatula HOM05D004902 ORTHO05D006603 2.2e-133 479.9 573 49.6
Sopen07g033000 Solanum pennellii HOM05D004902 ORTHO05D006603 2.9e-133 479.6 565 49.2
Solyc07g064810.3 Solanum lycopersicum HOM05D004902 ORTHO05D006603 3.8e-133 479.2 565 49.2
Glyma.18G093200 Glycine max HOM05D004902 ORTHO05D006603 5.0e-133 478.8 566 50.2
A04p12110 Brassica napus HOM05D004902 ORTHO05D006603 6.5e-133 478.4 560 48.2
Lalb_Chr10g0107081 Lupinus albus HOM05D004902 ORTHO05D006603 6.5e-133 478.4 557 50.1
C01p23080 Brassica napus HOM05D004902 ORTHO05D006603 1.4e-132 477.2 561 48.1
THA.LOC104811618 Tarenaya hassleriana HOM05D004902 ORTHO05D006603 1.4e-132 477.2 561 49.0
PGR083G1168 Punica granatum HOM05D004902 ORTHO05D006603 1.9e-132 476.9 566 48.2
CSS0000094 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 2.5e-132 476.5 566 48.9
PGSC0003DMG400022211 Solanum tuberosum HOM05D004902 ORTHO05D006603 3.2e-132 476.1 565 49.0
unitig_85.g27329 Utricularia gibba HOM05D004902 ORTHO05D006603 3.2e-132 476.1 499 53.9
HPP92_013494 Vanilla planifolia HOM05D004902 ORTHO05D006603 3.2e-132 476.1 565 48.7
Thhalv10024744m.g Eutrema salsugineum HOM05D004902 ORTHO05D006603 4.2e-132 475.7 561 48.0
BcaB06g27301 Brassica carinata HOM05D004902 ORTHO05D006603 5.5e-132 475.3 556 48.4
arahy.Tifrunner.gnm1.ann1.67NMHM Arachis hypogaea HOM05D004902 ORTHO05D006603 1.2e-131 474.2 571 48.7
BolC4t26162H Brassica oleracea HOM05D004902 ORTHO05D006603 1.2e-131 474.2 558 48.4
AT4G26900 Arabidopsis thaliana HOM05D004902 ORTHO05D006603 1.6e-131 473.8 600 46.5
HPP92_026047 Vanilla planifolia HOM05D004902 ORTHO05D006603 1.6e-131 473.8 558 48.7
Aa31LG3G11010 Aethionema arabicum HOM05D004902 ORTHO05D006603 2.1e-131 473.4 563 48.0
CSS0007833 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 2.1e-131 473.4 566 48.6
CARHR234510 Cardamine hirsuta HOM05D004902 ORTHO05D006603 2.7e-131 473.0 601 47.1
BcaNung03568 Brassica carinata HOM05D004902 ORTHO05D006603 3.6e-131 472.6 561 48.0
PRCOL_00006765 Prasinoderma coloniale HOM05D004902 ORTHO05D006603 3.6e-131 472.6 383 65.8
Sp7g24850 Schrenkiella parvula HOM05D004902 ORTHO05D006603 3.6e-131 472.6 564 47.7
TWI39G0824 Tripterygium wilfordii HOM05D004902 ORTHO05D006603 3.6e-131 472.6 559 49.0
TAR362G0117 Trochodendron aralioides HOM05D004902 ORTHO05D006603 3.6e-131 472.6 557 49.0
AL7G25950 Arabidopsis lyrata HOM05D004902 ORTHO05D006603 6.1e-131 471.9 600 46.7
Gohir.A11G067600 Gossypium hirsutum HOM05D004902 ORTHO05D006603 6.1e-131 471.9 570 48.4
Gohir.D11G071500 Gossypium hirsutum HOM05D004902 ORTHO05D006603 7.9e-131 471.5 570 48.2
Thecc.09G123200 Theobroma cacao HOM05D004902 ORTHO05D006603 7.9e-131 471.5 565 48.1
CANSAT11G1621 Cannabis sativa HOM05D004902 ORTHO05D006603 1.0e-130 471.1 556 48.7
Eucgr.F00742 Eucalyptus grandis HOM05D004902 ORTHO05D006603 1.0e-130 471.1 601 46.6
Gorai.007G076800 Gossypium raimondii HOM05D004902 ORTHO05D006603 1.0e-130 471.1 570 48.6
Duzib264G0382 Durio zibethinus HOM05D004902 ORTHO05D006603 1.4e-130 470.7 564 48.0
CAN.G337.72 Capsicum annuum HOM05D004902 ORTHO05D006603 2.3e-130 469.9 555 49.0
MELO3C013152.2 Cucumis melo HOM05D004902 ORTHO05D006603 2.3e-130 469.9 556 48.7
ECA246G3742 Erigeron canadensis HOM05D004902 ORTHO05D006603 2.3e-130 469.9 567 47.6
BolC1t02242H Brassica oleracea HOM05D004902 ORTHO05D006603 3.0e-130 469.5 563 47.8
RcHm_v2.0_Chr5g0040671 Rosa chinensis HOM05D004902 ORTHO05D006603 3.0e-130 469.5 566 48.1
SGA_v2.0_scaffold172G39008 Striga asiatica HOM05D004902 ORTHO05D006603 3.9e-130 469.2 559 48.8
Manes.03G132000 Manihot esculenta HOM05D004902 ORTHO05D006603 5.1e-130 468.8 555 49.0
Potri.009G061700 Populus trichocarpa HOM05D004902 ORTHO05D006603 5.1e-130 468.8 555 48.5
Sed0009199 Sechium edule HOM05D004902 ORTHO05D006603 5.1e-130 468.8 556 49.1
EL10Ac1g01638 Beta vulgaris HOM05D004902 ORTHO05D006603 6.7e-130 468.4 559 48.3
ClCG09G010930 Citrullus lanatus HOM05D004902 ORTHO05D006603 1.1e-129 467.6 570 48.1
CDE02G3624 Ceratophyllum demersum HOM05D004902 ORTHO05D006603 1.5e-129 467.2 562 49.1
SMO119G0352 Selaginella moellendorffii HOM05D004902 ORTHO05D006603 1.5e-129 467.2 549 50.1
Potri.001G267400 Populus trichocarpa HOM05D004902 ORTHO05D006603 2.0e-129 466.8 555 48.3
GSVIVG01037683001 Vitis vinifera HOM05D004902 ORTHO05D006603 2.0e-129 466.8 565 48.5
DCAR_022578 Daucus carota HOM05D004902 ORTHO05D006603 3.3e-129 466.1 484 54.5
AUR62026758 Chenopodium quinoa HOM05D004902 ORTHO05D006603 4.4e-129 465.7 553 47.9
Hma1.2p1_0036F.1_g023440 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 4.4e-129 465.7 557 48.1
Sc02g0003710 Simmondsia chinensis HOM05D004902 ORTHO05D006603 5.7e-129 465.3 587 48.0
Hund26666 Selenicereus undatus HOM05D004902 ORTHO05D006603 7.4e-129 464.9 588 46.8
Actinidia10742 Actinidia chinensis HOM05D004902 ORTHO05D006603 9.7e-129 464.5 589 47.4
Dinv40776 Davidia involucrata HOM05D004902 ORTHO05D006603 9.7e-129 464.5 569 48.0
QL08p009339 Quercus lobata HOM05D004902 ORTHO05D006603 9.7e-129 464.5 556 48.2
Rhsim06G0219700 Rhododendron simsii HOM05D004902 ORTHO05D006603 9.7e-129 464.5 571 48.0
MSTRG.12985 Avicennia marina HOM05D004902 ORTHO05D006603 1.3e-128 464.2 564 47.2
Ciclev10007818m.g Citrus clementina HOM05D004902 ORTHO05D006603 1.3e-128 464.2 555 48.5
Migut.M01740 Erythranthe guttata HOM05D004902 ORTHO05D006603 1.3e-128 464.2 602 47.0
CiPaw.11G191900 Carya illinoinensis HOM05D004902 ORTHO05D006603 2.2e-128 463.4 557 47.9
COL.COLO4_19537 Corchorus olitorius HOM05D004902 ORTHO05D006603 2.2e-128 463.4 534 50.0
MD03G1198000 Malus domestica HOM05D004902 ORTHO05D006603 2.2e-128 463.4 564 47.7
MSTRG.14441 Avicennia marina HOM05D004902 ORTHO05D006603 4.8e-128 462.2 554 48.2
arahy.Tifrunner.gnm1.ann1.E3581I Arachis hypogaea HOM05D004902 ORTHO05D006603 8.2e-128 461.5 592 47.3
Prupe.4G217200 Prunus persica HOM05D004902 ORTHO05D006603 1.1e-127 461.1 592 46.8
HanXRQChr05g0159411 Helianthus annuus HOM05D004902 ORTHO05D006603 1.2e-126 457.6 561 47.6
HanXRQChr08g0233501 Helianthus annuus HOM05D004902 ORTHO05D006603 1.5e-126 457.2 561 47.4
FAN08G0007 Fragaria x ananassa HOM05D004902 ORTHO05D006603 2.0e-126 456.8 527 50.7
BraA04t16876Z Brassica rapa HOM05D004902 ORTHO05D006603 2.6e-126 456.4 587 46.0
Cfa020314 Carpinus fangiana HOM05D004902 ORTHO05D006603 2.6e-126 456.4 600 46.2
FAN18G4155 Fragaria x ananassa HOM05D004902 ORTHO05D006603 3.4e-126 456.1 598 46.7
FAN04G1963 Fragaria x ananassa HOM05D004902 ORTHO05D006603 1.3e-125 454.1 603 46.6
Nn8g38868 Nelumbo nucifera HOM05D004902 ORTHO05D006603 1.3e-125 454.1 540 48.5
ATR0736G184 Amborella trichopoda HOM05D004902 ORTHO05D006603 1.7e-125 453.8 573 47.1
Lj1A876G36 Lonicera japonica HOM05D004902 ORTHO05D006603 1.7e-125 453.8 580 46.6
Atru.chr2.3483 Acer truncatum HOM05D004902 ORTHO05D006603 6.5e-125 451.8 591 45.7
Haze_09705 Corylus avellana HOM05D004902 ORTHO05D006603 6.5e-125 451.8 552 48.9
Lsat_1_v5_gn_5_3021 Lactuca sativa HOM05D004902 ORTHO05D006603 6.5e-125 451.8 560 47.7
Oeu062577.2 Olea europaea HOM05D004902 ORTHO05D006603 8.5e-125 451.4 586 46.9
FAN13G3021 Fragaria x ananassa HOM05D004902 ORTHO05D006603 4.2e-124 449.1 612 45.9
Cfa025092 Carpinus fangiana HOM05D004902 ORTHO05D006603 6.7e-122 441.8 558 45.3
AUR62013514 Chenopodium quinoa HOM05D004902 ORTHO05D006603 6.7e-122 441.8 524 48.7
A01p18110 Brassica napus HOM05D004902 ORTHO05D006603 1.5e-121 440.7 464 52.8
vmacro02220 Vaccinium macrocarpon HOM05D004902 ORTHO05D006603 8.2e-120 434.9 602 45.5
Peaxi162Scf00235g00424 Petunia axillaris HOM05D004902 ORTHO05D006603 4.1e-119 432.6 394 59.6
Gohir.A10G179900 Gossypium hirsutum HOM05D004902 ORTHO05D006603 5.3e-119 432.2 579 46.5
FvH4_5g29730 Fragaria vesca HOM05D004902 ORTHO05D006603 7.7e-118 428.3 373 61.7
Zm00001eb011150 Zea mays HOM05D004902 ORTHO05D006603 2.9e-117 426.4 373 61.9
Ah.13g076200 Amaranthus hybridus HOM05D004902 ORTHO05D006603 5.0e-117 425.6 554 46.9
Oeu013136.2 Olea europaea HOM05D004902 ORTHO05D006603 5.0e-117 425.6 605 44.1
Gorai.011G209600 Gossypium raimondii HOM05D004902 ORTHO05D006603 1.9e-116 423.7 548 46.0
Nitab4.5_0013139g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 2.5e-116 423.3 381 59.8
Gohir.D10G186800 Gossypium hirsutum HOM05D004902 ORTHO05D006603 2.7e-115 419.9 548 45.8
MD11G1214000 Malus domestica HOM05D004902 ORTHO05D006603 5.9e-110 402.1 315 65.7
Sabra16G0163900 Salix brachista HOM05D004902 ORTHO05D006603 7.7e-110 401.7 594 42.8
PSO832G3378 Papaver somniferum HOM05D004902 ORTHO05D006603 5.5e-108 395.6 570 43.7
PSO210G2842 Papaver somniferum HOM05D004902 ORTHO05D006603 9.4e-108 394.8 570 43.7
Nitab4.5_0022774g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 1.3e-104 384.4 332 61.1
CsaV3_7G021940 Cucumis sativus L. HOM05D004902 ORTHO05D006603 2.0e-102 377.1 480 45.8
HanXRQChr08g0233821 Helianthus annuus HOM05D004902 ORTHO05D006603 2.0e-94 350.5 376 54.3
Hma1.2p1_0036F.1_g023430 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 1.1e-87 328.2 447 43.4
Cpa.g.sc12.277 Carica papaya HOM05D004902 ORTHO05D006603 2.4e-87 327.0 258 65.1
CAN.G677.16 Capsicum annuum HOM05D004902 ORTHO05D006603 3.9e-77 293.1 364 48.6
Lsat_1_v5_gn_3_2301 Lactuca sativa HOM05D004902 ORTHO05D006603 2.3e-37 161.0 274 38.3
SEGI_16435 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 1.3e-32 145.2 111 68.5
RcHm_v2.0_Chr4g0412471 Rosa chinensis HOM05D004902 ORTHO05D006603 1.6e-27 128.3 150 48.7
Aqoxy84s005 Aquilegia oxysepala HOM05D004902 ORTHO05D038539 2.8e-27 127.5 315 29.8
Lsat_1_v5_gn_0_44000 Lactuca sativa HOM05D004902 ORTHO05D038539 6.1e-22 109.8 313 31.3
Glyma.08G319400 Glycine max HOM05D004902 ORTHO05D029739 1.7e-16 91.7 85 58.8
VMungo0540G1125 Vigna mungo HOM05D004902 ORTHO05D006603 4.2e-15 87.0 76 57.9
Cpa.g.c34168 Carica papaya HOM05D004902 ORTHO05D006603 4.7e-14 83.6 83 48.2
MD11G1213900 Malus domestica HOM05D004902 ORTHO05D006603 6.7e-13 79.7 68 51.5
FvH4_6g25500 Fragaria vesca HOM05D000003 ORTHO05D000007 2.0e-12 78.2 73 54.8
BcaNung03560 Brassica carinata HOM05D004902 ORTHO05D006603 3.3e-12 77.4 59 62.7
BraA01t01766Z Brassica rapa HOM05D004902 ORTHO05D006603 3.3e-12 77.4 68 51.5
SEGI_35364 Sequoiadendron giganteum HOM05D004902 ORTHO05D025756 6.5e-08 63.2 43 60.5
Ah.01g018890 Amaranthus hybridus HOM05D004902 ORTHO05D006603 1.9e-07 61.6 103 38.8
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 1.6e-06 58.5 48 52.1


User provided reference genes

Program Settings