Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre11.g479600 Chlamydomonas reinhardtii HOM05D005743 ORTHO05D007031 0.0e+00 1562.4 797 100.0
PRCOL_00004461 Prasinoderma coloniale HOM05D005743 ORTHO05D007031 6.2e-64 250.0 802 30.8
CBR_g22437 Chara braunii HOM05D005743 ORTHO05D007031 6.7e-34 150.2 793 24.5
PSO407G0387 Papaver somniferum HOM05D005743 ORTHO05D007031 5.6e-33 147.1 798 22.2
AagrBONN_evm.TU.Sc2ySwM_344.5359 Anthoceros agrestis HOM05D005743 ORTHO05D007031 1.3e-32 146.0 806 22.1
Pp3c1_39250 Physcomitrium patens HOM05D005743 ORTHO05D007031 2.1e-32 145.2 806 23.3
PSO170G2277 Papaver somniferum HOM05D005743 ORTHO05D007031 8.2e-32 143.3 797 21.8
HanXRQChr13g0413001 Helianthus annuus HOM05D005743 ORTHO05D007031 4.5e-30 137.5 234 35.0
CANSAT25G1370 Cannabis sativa HOM05D005743 ORTHO05D007031 2.9e-29 134.8 799 22.7
CDE02G2026 Ceratophyllum demersum HOM05D005743 ORTHO05D007031 3.8e-29 134.4 237 33.8
Mapoly0134s0038 Marchantia polymorpha HOM05D005743 ORTHO05D007031 6.5e-29 133.7 236 33.5
SMO351G0556 Selaginella moellendorffii HOM05D005743 ORTHO05D007031 1.1e-28 132.9 204 37.7
Psat6g165240 Pisum sativum HOM05D005743 ORTHO05D007031 1.4e-28 132.5 255 32.5
Thecc.01G301000 Theobroma cacao HOM05D005743 ORTHO05D007031 1.9e-28 132.1 806 21.8
Lsat_1_v5_gn_5_191280 Lactuca sativa HOM05D005743 ORTHO05D007031 2.5e-28 131.7 245 35.5
Phvul.007G147000 Phaseolus vulgaris HOM05D005743 ORTHO05D007031 3.2e-28 131.3 799 21.0
Thhalv10001391m.g Eutrema salsugineum HOM05D005743 ORTHO05D007031 4.2e-28 131.0 803 21.3
Pp3c2_6060 Physcomitrium patens HOM05D005743 ORTHO05D007031 5.5e-28 130.6 805 21.6
HPP92_016082 Vanilla planifolia HOM05D005743 ORTHO05D007031 5.5e-28 130.6 231 30.3
Ca_10331_v3 Cicer arietinum L. HOM05D005743 ORTHO05D007031 7.1e-28 130.2 795 21.6
Migut.O00421 Erythranthe guttata HOM05D005743 ORTHO05D007031 7.1e-28 130.2 187 39.0
Hma1.2p1_0491F.1_g164590 Hydrangea macrophylla HOM05D005743 ORTHO05D007031 7.1e-28 130.2 796 21.5
Hund18172 Selenicereus undatus HOM05D005743 ORTHO05D007031 7.1e-28 130.2 223 34.5
TWI59G0198 Tripterygium wilfordii HOM05D005743 ORTHO05D007031 7.1e-28 130.2 799 21.8
Migut.N01507 Erythranthe guttata HOM05D005743 ORTHO05D007031 9.3e-28 129.8 187 39.0
Medtr1g088430 Medicago truncatula HOM05D005743 ORTHO05D007031 2.7e-27 128.3 234 31.2
Migut.D00150 Erythranthe guttata HOM05D005743 ORTHO05D007031 3.5e-27 127.9 253 32.4
SalBow3G4402 Salvia bowleyana HOM05D005743 ORTHO05D007031 3.5e-27 127.9 232 32.3
CSS0024650 Camellia sinensis var. sinensis HOM05D005743 ORTHO05D007031 6.0e-27 127.1 179 41.3
TPR.G33974 Trifolium pratense HOM05D005743 ORTHO05D007031 6.0e-27 127.1 239 32.6
Glyma.10G018000 Glycine max HOM05D005743 ORTHO05D007031 7.9e-27 126.7 794 22.9
Lj5g0015401 Lotus japonicus HOM05D005743 ORTHO05D007031 7.9e-27 126.7 236 32.2
Sed0000130 Sechium edule HOM05D005743 ORTHO05D007031 7.9e-27 126.7 225 32.4
THA.LOC104827666 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 7.9e-27 126.7 232 34.5
Dinv19686 Davidia involucrata HOM05D005743 ORTHO05D007031 1.0e-26 126.3 236 31.8
VMungo0720G3165 Vigna mungo HOM05D005743 ORTHO05D007031 1.3e-26 125.9 797 22.1
GSVIVG01028023001 Vitis vinifera HOM05D005743 ORTHO05D007031 1.3e-26 125.9 234 32.5
Cc01_g20880 Coffea canephora HOM05D005743 ORTHO05D007031 1.8e-26 125.6 235 32.3
Oeu046676.1 Olea europaea HOM05D005743 ORTHO05D007031 1.8e-26 125.6 234 32.9
MBI18_g06031_MAGBIO Magnolia biondii HOM05D005743 ORTHO05D007031 2.3e-26 125.2 179 40.8
Eucgr.K03487 Eucalyptus grandis HOM05D005743 ORTHO05D007031 3.0e-26 124.8 179 40.2
Actinidia24820 Actinidia chinensis HOM05D005743 ORTHO05D007031 3.9e-26 124.4 228 31.1
AL4G47180 Arabidopsis lyrata HOM05D005743 ORTHO05D007031 3.9e-26 124.4 238 31.1
SalBow2G1764 Salvia bowleyana HOM05D005743 ORTHO05D007031 3.9e-26 124.4 236 32.2
Aqoxy2G02938 Aquilegia oxysepala HOM05D005743 ORTHO05D007031 6.7e-26 123.6 179 39.7
Haze_04942 Corylus avellana HOM05D005743 ORTHO05D007031 8.7e-26 123.2 237 30.0
DCAR_005790 Daucus carota HOM05D005743 ORTHO05D007031 8.7e-26 123.2 249 29.7
PGR044G1461 Punica granatum HOM05D005743 ORTHO05D007031 8.7e-26 123.2 179 40.8
SGA_v2.0_scaffold198G41143 Striga asiatica HOM05D005743 ORTHO05D007031 8.7e-26 123.2 229 32.3
Carub.0004s3033 Capsella rubella HOM05D005743 ORTHO05D007031 1.1e-25 122.9 248 30.6
Nitab4.5_0005805g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 1.1e-25 122.9 234 32.1
Solyc06g009130.3 Solanum lycopersicum HOM05D005743 ORTHO05D007031 1.1e-25 122.9 234 31.6
Sopen06g003890 Solanum pennellii HOM05D005743 ORTHO05D007031 1.1e-25 122.9 234 31.6
Aa31LG1G28940 Aethionema arabicum HOM05D005743 ORTHO05D007031 1.5e-25 122.5 185 39.5
arahy.Tifrunner.gnm1.ann1.39WPG8 Arachis hypogaea HOM05D005743 ORTHO05D007031 1.5e-25 122.5 243 31.7
arahy.Tifrunner.gnm1.ann1.V1RZF6 Arachis hypogaea HOM05D005743 ORTHO05D007031 1.5e-25 122.5 243 31.3
CAN.G1989.8 Capsicum annuum HOM05D005743 ORTHO05D007031 1.5e-25 122.5 242 31.4
CARHR143000 Cardamine hirsuta HOM05D005743 ORTHO05D007031 1.5e-25 122.5 184 39.1
COL.COLO4_23341 Corchorus olitorius HOM05D005743 ORTHO05D007031 1.5e-25 122.5 806 20.8
Duzib138G1616 Durio zibethinus HOM05D005743 ORTHO05D007031 1.5e-25 122.5 792 22.3
Peaxi162Scf00399g00716 Petunia axillaris HOM05D005743 ORTHO05D007031 1.5e-25 122.5 188 38.3
Gohir.D11G119400 Gossypium hirsutum HOM05D005743 ORTHO05D007031 1.9e-25 122.1 233 31.3
AT2G47600 Arabidopsis thaliana HOM05D005743 ORTHO05D007031 2.5e-25 121.7 240 30.0
BcaB02g08759 Brassica carinata HOM05D005743 ORTHO05D007031 2.5e-25 121.7 249 30.1
A05p00330 Brassica napus HOM05D005743 ORTHO05D007031 2.5e-25 121.7 250 29.6
FAN15G2676 Fragaria x ananassa HOM05D005743 ORTHO05D007031 2.5e-25 121.7 235 32.3
ATR0706G014 Amborella trichopoda HOM05D005743 ORTHO05D007031 3.3e-25 121.3 179 39.1
BraA05t19031Z Brassica rapa HOM05D005743 ORTHO05D007031 3.3e-25 121.3 250 29.6
Cfa005908 Carpinus fangiana HOM05D005743 ORTHO05D007031 3.3e-25 121.3 237 30.0
Nitab4.5_0002470g0070 Nicotiana tabacum HOM05D005743 ORTHO05D007031 3.3e-25 121.3 234 32.1
TAR362G0334 Trochodendron aralioides HOM05D005743 ORTHO05D007031 3.3e-25 121.3 179 39.7
AUR62008667 Chenopodium quinoa HOM05D005743 ORTHO05D007031 4.3e-25 120.9 182 40.1
Os11g0660000 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 4.3e-25 120.9 237 32.9
C04p00250 Brassica napus HOM05D005743 ORTHO05D007031 5.7e-25 120.6 250 29.6
BolC4t21668H Brassica oleracea HOM05D005743 ORTHO05D007031 5.7e-25 120.6 250 29.6
Cpa.g.sc9.258 Carica papaya HOM05D005743 ORTHO05D007031 5.7e-25 120.6 236 30.5
MELO3C017953.2 Cucumis melo HOM05D005743 ORTHO05D007031 5.7e-25 120.6 232 30.6
CsaV3_4G000840 Cucumis sativus L. HOM05D005743 ORTHO05D007031 7.4e-25 120.2 232 30.6
Eucgr.K03488 Eucalyptus grandis HOM05D005743 ORTHO05D007031 7.4e-25 120.2 245 32.2
Rhsim01G0285500 Rhododendron simsii HOM05D005743 ORTHO05D007031 7.4e-25 120.2 226 30.5
RcHm_v2.0_Chr6g0294071 Rosa chinensis HOM05D005743 ORTHO05D007031 7.4e-25 120.2 179 38.0
THA.LOC104817489 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 7.4e-25 120.2 799 21.2
Atru.chr5.1142 Acer truncatum HOM05D005743 ORTHO05D007031 9.7e-25 119.8 240 30.4
AagrBONN_evm.TU.Sc2ySwM_368.1084 Anthoceros agrestis HOM05D005743 ORTHO05D007031 9.7e-25 119.8 181 42.0
CAN.G1280.3 Capsicum annuum HOM05D005743 ORTHO05D007031 9.7e-25 119.8 179 39.1
FvH4_2g25770 Fragaria vesca HOM05D005743 ORTHO05D007031 9.7e-25 119.8 237 32.1
Prupe.8G261900 Prunus persica HOM05D005743 ORTHO05D007031 9.7e-25 119.8 236 30.1
Sc05g0003780 Simmondsia chinensis HOM05D005743 ORTHO05D007031 9.7e-25 119.8 245 31.0
EL10Ac7g17510 Beta vulgaris HOM05D005743 ORTHO05D007031 1.3e-24 119.4 180 39.4
AUR62025577 Chenopodium quinoa HOM05D005743 ORTHO05D007031 1.3e-24 119.4 178 39.3
FAN20G0637 Fragaria x ananassa HOM05D005743 ORTHO05D007031 1.3e-24 119.4 234 31.6
Gorai.007G127900 Gossypium raimondii HOM05D005743 ORTHO05D007031 1.3e-24 119.4 233 31.8
Manes.01G219600 Manihot esculenta HOM05D005743 ORTHO05D007031 1.3e-24 119.4 179 38.0
RcHm_v2.0_Chr6g0294081 Rosa chinensis HOM05D005743 ORTHO05D007031 1.3e-24 119.4 178 38.2
QL12p028420 Quercus lobata HOM05D005743 ORTHO05D007031 1.6e-24 119.0 179 39.1
Sc05g0003820 Simmondsia chinensis HOM05D005743 ORTHO05D007031 1.6e-24 119.0 245 31.4
FAN27G1322 Fragaria x ananassa HOM05D005743 ORTHO05D007031 2.8e-24 118.2 231 31.6
Ciclev10019600m.g Citrus clementina HOM05D005743 ORTHO05D007031 4.8e-24 117.5 248 30.6
MD03G1288600 Malus domestica HOM05D005743 ORTHO05D007031 4.8e-24 117.5 228 29.4
Ah.08g213420 Amaranthus hybridus HOM05D005743 ORTHO05D007031 6.3e-24 117.1 184 38.0
ClCG10G010970 Citrullus lanatus HOM05D005743 ORTHO05D007031 6.3e-24 117.1 232 30.2
Lj2A1195G24 Lonicera japonica HOM05D005743 ORTHO05D007031 6.3e-24 117.1 236 30.9
ECA248G2514 Erigeron canadensis HOM05D005743 ORTHO05D007031 8.2e-24 116.7 174 38.5
Lalb_Chr06g0166491 Lupinus albus HOM05D005743 ORTHO05D007031 8.2e-24 116.7 178 37.1
Gohir.A11G114301 Gossypium hirsutum HOM05D005743 ORTHO05D007031 1.1e-23 116.3 179 37.4
Nn4g25787 Nelumbo nucifera HOM05D005743 ORTHO05D007031 1.1e-23 116.3 253 29.6
CiPaw.08G094900 Carya illinoinensis HOM05D005743 ORTHO05D007031 1.4e-23 115.9 147 41.5
FAN24G1083 Fragaria x ananassa HOM05D005743 ORTHO05D007031 1.8e-23 115.5 179 37.4
Potri.014G128600 Populus trichocarpa HOM05D005743 ORTHO05D007031 3.1e-23 114.8 179 36.3
Zm00001eb165450 Zea mays HOM05D005743 ORTHO05D007031 3.1e-23 114.8 189 36.5
Hund18173 Selenicereus undatus HOM05D005743 ORTHO05D007031 1.2e-22 112.8 188 37.2
vmacro15016 Vaccinium macrocarpon HOM05D005743 ORTHO05D007031 2.0e-22 112.1 231 32.0
Peaxi162Scf00001g04234 Petunia axillaris HOM05D005743 ORTHO05D007031 2.2e-21 108.6 179 36.9
Nitab4.5_0001879g0130 Nicotiana tabacum HOM05D005743 ORTHO05D007031 4.2e-20 104.4 200 34.0
SEGI_24798 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 7.2e-20 103.6 156 35.3
Sabra14G0095500 Salix brachista HOM05D005743 ORTHO05D007031 1.2e-19 102.8 204 29.9
SGA_v2.0_scaffold1G00362 Striga asiatica HOM05D005743 ORTHO05D007031 2.8e-16 91.7 181 33.1
THA.LOC104798829 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 8.2e-16 90.1 150 37.3
Zm00001eb407450 Zea mays HOM05D005743 ORTHO05D007031 2.6e-14 85.1 104 39.4
Actinidia21045 Actinidia chinensis HOM05D005743 ORTHO05D007031 2.2e-13 82.0 90 46.7
EL10Ac3g06395 Beta vulgaris HOM05D005743 ORTHO05D007031 6.1e-11 73.9 148 29.1
MCO02G055 Micromonas commoda HOM05D018879 ORTHO05D018932 5.1e-10 70.9 244 27.0
SEGI_13510 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 1.1e-09 69.7 105 36.2
PRCOL_00000753 Prasinoderma coloniale HOM05D018879 ORTHO05D018932 2.6e-09 68.6 114 36.8
MCO03G398 Micromonas commoda HOM05D018879 ORTHO05D018932 3.3e-09 68.2 119 31.9
Os02g0644900 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 3.3e-09 68.2 135 32.6
Actinidia26720 Actinidia chinensis HOM05D005743 ORTHO05D007031 1.7e-08 65.9 93 37.6
PRCOL_00000097 Prasinoderma coloniale HOM05D018879 ORTHO05D018932 4.8e-08 64.3 141 34.8


User provided reference genes

Program Settings