Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre11.g477625 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D034305 0.0e+00 3180.6 1824 100.0
MCO07G355 Micromonas commoda HOM05D005347 ORTHO05D034305 0.0e+00 1490.3 1630 53.7
CBR_g6691 Chara braunii HOM05D005347 ORTHO05D034305 4.6e-288 995.7 1620 40.6
Cre07.g325500 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D007838 5.2e-167 593.6 1483 30.5
AagrBONN_evm.TU.Sc2ySwM_368.2268 Anthoceros agrestis HOM05D005347 ORTHO05D007838 1.9e-164 585.1 1508 30.7
CBR_g40549 Chara braunii HOM05D005347 ORTHO05D007838 2.4e-164 584.7 1467 31.1
MCO07G263 Micromonas commoda HOM05D005347 ORTHO05D007838 1.6e-160 572.0 1526 29.6
Dinv12481 Davidia involucrata HOM05D005347 ORTHO05D007838 1.4e-159 568.9 1486 30.2
PSO339G0901 Papaver somniferum HOM05D005347 ORTHO05D007838 1.4e-159 568.9 1474 30.6
Eucgr.A02348 Eucalyptus grandis HOM05D005347 ORTHO05D007838 1.8e-159 568.5 1475 30.0
CSS0016317 Camellia sinensis var. sinensis HOM05D005347 ORTHO05D007838 3.1e-159 567.8 1470 29.9
SMO347G0130 Selaginella moellendorffii HOM05D005347 ORTHO05D007838 6.8e-159 566.6 1481 30.4
Migut.J01759 Erythranthe guttata HOM05D005347 ORTHO05D007838 8.9e-159 566.2 1471 30.6
QL07p000318 Quercus lobata HOM05D005347 ORTHO05D007838 8.9e-159 566.2 1533 30.1
PSO384G4351 Papaver somniferum HOM05D005347 ORTHO05D007838 1.2e-158 565.8 1474 30.5
MBI17_g13973_MAGBIO Magnolia biondii HOM05D005347 ORTHO05D007838 2.0e-158 565.1 1474 30.5
Sed0003738 Sechium edule HOM05D005347 ORTHO05D007838 4.4e-158 563.9 1487 29.6
CAN.G676.69 Capsicum annuum HOM05D005347 ORTHO05D007838 5.8e-158 563.5 1468 30.4
Sopen04g007830 Solanum pennellii HOM05D005347 ORTHO05D007838 5.8e-158 563.5 1476 30.4
Pp3c10_13960 Physcomitrium patens HOM05D005347 ORTHO05D007838 9.9e-158 562.8 1472 30.1
Pp3c10_13970 Physcomitrium patens HOM05D005347 ORTHO05D007838 9.9e-158 562.8 1472 30.1
AUR62024447 Chenopodium quinoa HOM05D005347 ORTHO05D007838 1.3e-157 562.4 1470 30.6
COL.COLO4_28282 Corchorus olitorius HOM05D005347 ORTHO05D007838 1.3e-157 562.4 1465 30.2
Nn2g15252 Nelumbo nucifera HOM05D005347 ORTHO05D007838 1.3e-157 562.4 1466 30.4
Solyc04g015750.3 Solanum lycopersicum HOM05D005347 ORTHO05D007838 1.3e-157 562.4 1473 30.4
AUR62026037 Chenopodium quinoa HOM05D005347 ORTHO05D007838 2.2e-157 561.6 1467 30.9
ClCG04G000090 Citrullus lanatus HOM05D005347 ORTHO05D007838 2.2e-157 561.6 1488 29.8
CsaV3_4G011730 Cucumis sativus L. HOM05D005347 ORTHO05D007838 2.2e-157 561.6 1488 29.8
Lsat_1_v5_gn_9_29020 Lactuca sativa HOM05D005347 ORTHO05D007838 2.9e-157 561.2 1475 30.6
MELO3C023131.2 Cucumis melo HOM05D005347 ORTHO05D007838 3.7e-157 560.8 1488 30.0
Duzib093G0142 Durio zibethinus HOM05D005347 ORTHO05D007838 4.9e-157 560.5 1471 30.3
EL10Ac3g07089 Beta vulgaris HOM05D005347 ORTHO05D007838 6.4e-157 560.1 1463 30.1
Actinidia17237 Actinidia chinensis HOM05D005347 ORTHO05D007838 8.3e-157 559.7 1485 30.0
Cc06_g17100 Coffea canephora HOM05D005347 ORTHO05D007838 8.3e-157 559.7 1485 29.9
Manes.08G050600 Manihot esculenta HOM05D005347 ORTHO05D007838 8.3e-157 559.7 1485 30.1
Mapoly0008s0194 Marchantia polymorpha HOM05D005347 ORTHO05D007838 8.3e-157 559.7 1465 30.2
Zm00001eb433610 Zea mays HOM05D005347 ORTHO05D007838 8.3e-157 559.7 1483 30.3
Phvul.007G252700 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 1.1e-156 559.3 1471 30.6
Phvul.001G132200 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 1.4e-156 558.9 1472 29.6
PGSC0003DMG400027276 Solanum tuberosum HOM05D005347 ORTHO05D007838 1.4e-156 558.9 1473 30.3
Potri.006G051100 Populus trichocarpa HOM05D005347 ORTHO05D007838 1.9e-156 558.5 1509 29.8
SalBow6G2907 Salvia bowleyana HOM05D005347 ORTHO05D007838 1.9e-156 558.5 1511 29.5
SEGI_14472 Sequoiadendron giganteum HOM05D005347 ORTHO05D007838 1.9e-156 558.5 1475 29.9
Cfa016819 Carpinus fangiana HOM05D005347 ORTHO05D007838 2.4e-156 558.1 1472 29.7
Atru.chr1.1096 Acer truncatum HOM05D005347 ORTHO05D007838 3.2e-156 557.8 1472 29.8
Ca_26018_v3 Cicer arietinum L. HOM05D005347 ORTHO05D007838 3.2e-156 557.8 1466 30.0
ECA247G2461 Erigeron canadensis HOM05D005347 ORTHO05D007838 3.2e-156 557.8 1469 30.1
Gorai.006G136500 Gossypium raimondii HOM05D005347 ORTHO05D007838 3.2e-156 557.8 1470 30.3
arahy.Tifrunner.gnm1.ann1.XR90DA Arachis hypogaea HOM05D005347 ORTHO05D007838 4.1e-156 557.4 1487 30.2
arahy.Tifrunner.gnm1.ann1.RSU8B2 Arachis hypogaea HOM05D005347 ORTHO05D007838 5.4e-156 557.0 1487 30.3
Glyma.10G097800 Glycine max HOM05D005347 ORTHO05D007838 5.4e-156 557.0 1488 30.3
Gohir.A09G122100 Gossypium hirsutum HOM05D005347 ORTHO05D007838 5.4e-156 557.0 1470 30.3
TWI53G0247 Tripterygium wilfordii HOM05D005347 ORTHO05D007838 5.4e-156 557.0 1503 29.5
Duzib128G0418 Durio zibethinus HOM05D005347 ORTHO05D007838 7.1e-156 556.6 1470 30.3
Lalb_Chr25g0287111 Lupinus albus HOM05D005347 ORTHO05D007838 7.1e-156 556.6 1447 30.8
SGA_v2.0_scaffold105G30411 Striga asiatica HOM05D005347 ORTHO05D007838 7.1e-156 556.6 1474 30.1
Actinidia38547 Actinidia chinensis HOM05D005347 ORTHO05D007838 9.2e-156 556.2 1485 29.6
Psat6g120040 Pisum sativum HOM05D005347 ORTHO05D007838 9.2e-156 556.2 1467 30.1
Ciclev10004154m.g Citrus clementina HOM05D005347 ORTHO05D007838 1.2e-155 555.8 1477 29.7
Glyma.19G139300 Glycine max HOM05D005347 ORTHO05D007838 1.2e-155 555.8 1489 29.9
DCAR_013602 Daucus carota HOM05D005347 ORTHO05D007838 1.6e-155 555.4 1521 30.1
PGR004G1765 Punica granatum HOM05D005347 ORTHO05D007838 1.6e-155 555.4 1469 30.1
Oeu008920.1 Olea europaea HOM05D005347 ORTHO05D007838 2.1e-155 555.1 1464 29.6
Nn7g36281 Nelumbo nucifera HOM05D005347 ORTHO05D007838 2.7e-155 554.7 1460 30.7
Aqoxy2G00152 Aquilegia oxysepala HOM05D005347 ORTHO05D007838 3.5e-155 554.3 1450 30.6
Hma1.2p1_2002F.1_g310740 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 3.5e-155 554.3 1462 30.2
Prupe.7G061100 Prunus persica HOM05D005347 ORTHO05D007838 3.5e-155 554.3 1468 30.0
Lalb_Chr20g0110491 Lupinus albus HOM05D005347 ORTHO05D007838 6.0e-155 553.5 1446 30.6
HPP92_012089 Vanilla planifolia HOM05D005347 ORTHO05D007838 7.8e-155 553.1 1488 30.0
Glyma.03G137000 Glycine max HOM05D005347 ORTHO05D007838 1.0e-154 552.7 1490 29.7
MD12G1073700 Malus domestica HOM05D005347 ORTHO05D007838 1.0e-154 552.7 1470 29.7
MD14G1072000 Malus domestica HOM05D005347 ORTHO05D007838 2.3e-154 551.6 1471 29.9
HanXRQChr10g0288781 Helianthus annuus HOM05D005347 ORTHO05D007838 3.0e-154 551.2 1444 30.5
HanXRQChr10g0296641 Helianthus annuus HOM05D005347 ORTHO05D007838 3.0e-154 551.2 1444 30.5
Sabra06G0035800 Salix brachista HOM05D005347 ORTHO05D007838 3.0e-154 551.2 1506 29.6
MSTRG.10814 Avicennia marina HOM05D005347 ORTHO05D007838 5.1e-154 550.4 1469 29.7
FAN09G2062 Fragaria x ananassa HOM05D005347 ORTHO05D007838 1.1e-153 549.3 1498 29.7
RcHm_v2.0_Chr3g0482331 Rosa chinensis HOM05D005347 ORTHO05D007838 1.5e-153 548.9 1456 30.7
TAR465G0003 Trochodendron aralioides HOM05D005347 ORTHO05D007838 1.5e-153 548.9 1487 29.7
VMungo1383G0107 Vigna mungo HOM05D005347 ORTHO05D007838 1.9e-153 548.5 1475 30.0
Ah.13g076460 Amaranthus hybridus HOM05D005347 ORTHO05D007838 2.5e-153 548.1 1472 29.8
Rhsim04G0102500 Rhododendron simsii HOM05D005347 ORTHO05D007838 2.5e-153 548.1 1441 30.8
Carub.0006s1179 Capsella rubella HOM05D005347 ORTHO05D007838 4.3e-153 547.4 1466 30.2
BcaB01g05345 Brassica carinata HOM05D005347 ORTHO05D007838 5.6e-153 547.0 1468 29.8
A03p06120 Brassica napus HOM05D005347 ORTHO05D007838 5.6e-153 547.0 1468 29.8
BraA03t09944Z Brassica rapa HOM05D005347 ORTHO05D007838 5.6e-153 547.0 1468 29.8
FAN02G3940 Fragaria x ananassa HOM05D005347 ORTHO05D007838 7.3e-153 546.6 1460 30.3
AL6G24240 Arabidopsis lyrata HOM05D005347 ORTHO05D007838 1.2e-152 545.8 1466 29.7
C03p07120 Brassica napus HOM05D005347 ORTHO05D007838 1.2e-152 545.8 1468 29.7
BolC3t13211H Brassica oleracea HOM05D005347 ORTHO05D007838 1.2e-152 545.8 1468 29.7
FAN05G5756 Fragaria x ananassa HOM05D005347 ORTHO05D007838 1.2e-152 545.8 1458 30.4
Lj1g0017211 Lotus japonicus HOM05D005347 ORTHO05D007838 1.2e-152 545.8 1470 29.9
Aa31sc144G60 Aethionema arabicum HOM05D005347 ORTHO05D007838 2.8e-152 544.7 1460 29.8
FvH4_6g23800 Fragaria vesca HOM05D005347 ORTHO05D007838 2.8e-152 544.7 1458 30.4
FAN14G0383 Fragaria x ananassa HOM05D005347 ORTHO05D007838 2.8e-152 544.7 1458 30.4
Sp6g30390 Schrenkiella parvula HOM05D005347 ORTHO05D007838 1.1e-151 542.7 1468 29.8
AT5G13630 Arabidopsis thaliana HOM05D005347 ORTHO05D007838 1.8e-151 542.0 1466 29.8
Thhalv10012443m.g Eutrema salsugineum HOM05D005347 ORTHO05D007838 3.1e-151 541.2 1468 29.4
Dinv39601 Davidia involucrata HOM05D005347 ORTHO05D007838 1.5e-150 538.9 1447 30.3
ATR0626G393 Amborella trichopoda HOM05D005347 ORTHO05D007838 4.4e-150 537.3 1450 29.4
Peaxi162Scf00130g00022 Petunia axillaris HOM05D005347 ORTHO05D007838 7.6e-150 536.6 1437 30.4
CARHR199810 Cardamine hirsuta HOM05D005347 ORTHO05D007838 9.9e-150 536.2 1464 29.4
Cpa.g.sc92.51 Carica papaya HOM05D005347 ORTHO05D007838 1.3e-149 535.8 1485 29.3
Lsat_1_v5_gn_9_29121 Lactuca sativa HOM05D005347 ORTHO05D007838 2.2e-149 535.0 1535 29.5
Gohir.D09G118200 Gossypium hirsutum HOM05D005347 ORTHO05D007838 1.7e-146 525.4 1470 29.7
Haze_19858 Corylus avellana HOM05D005347 ORTHO05D007838 1.6e-144 518.8 1487 28.5
vmacro09075 Vaccinium macrocarpon HOM05D005347 ORTHO05D007838 1.2e-142 512.7 1390 29.3
CDE05G2234 Ceratophyllum demersum HOM05D005347 ORTHO05D007838 6.0e-139 500.4 1465 29.1
unitig_578.g15983 Utricularia gibba HOM05D005347 ORTHO05D007838 3.6e-136 491.1 1490 28.5
Thecc.05G153600 Theobroma cacao HOM05D005347 ORTHO05D007838 3.9e-130 471.1 1313 29.9
Sc04g0002790 Simmondsia chinensis HOM05D005347 ORTHO05D007838 1.8e-127 462.2 1307 30.1
CiPaw.10G033300 Carya illinoinensis HOM05D005347 ORTHO05D007838 9.0e-127 459.9 1312 29.5
Hund05283 Selenicereus undatus HOM05D005347 ORTHO05D007838 1.8e-122 445.7 1064 31.0
Oeu017946.1 Olea europaea HOM05D005347 ORTHO05D007838 3.0e-122 444.9 1439 27.3
TPR.G10615 Trifolium pratense HOM05D005347 ORTHO05D007838 3.0e-122 444.9 1390 29.1
Hma1.2p1_2002F.1_g310730 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 4.5e-118 431.0 1065 30.4
Lju124A41T48 Lonicera japonica HOM05D005347 ORTHO05D007838 5.0e-117 427.6 1070 29.9
GSVIVG01033277001 Vitis vinifera HOM05D005347 ORTHO05D007838 5.1e-114 417.5 1459 27.1
Nitab4.5_0005195g0040 Nicotiana tabacum HOM05D005347 ORTHO05D007838 6.3e-112 410.6 1162 30.2
Nitab4.5_0010636g0020 Nicotiana tabacum HOM05D005347 ORTHO05D007838 7.7e-110 403.7 1144 30.2
TAR369G0825 Trochodendron aralioides HOM05D005347 ORTHO05D007838 2.9e-109 401.7 937 30.9
TAR623G1548 Trochodendron aralioides HOM05D005347 ORTHO05D007838 6.5e-109 400.6 932 31.1
Os07g0656500 Oryza sativa ssp. japonica HOM05D005347 ORTHO05D007838 9.4e-76 290.4 825 28.2
MD03G1176300 Malus domestica HOM05D005347 ORTHO05D021808 7.0e-71 274.2 686 30.6
Zm00001eb066400 Zea mays HOM05D005347 ORTHO05D007838 2.5e-60 239.2 424 35.6
MD09G1118200 Malus domestica HOM05D005347 ORTHO05D007838 8.0e-59 234.2 674 28.2
PRCOL_00001535 Prasinoderma coloniale HOM05D005347 ORTHO05D007838 1.2e-43 183.7 476 30.9
TPR.G25646 Trifolium pratense HOM05D005347 ORTHO05D007838 4.1e-39 168.7 449 30.5
CDE07G0141 Ceratophyllum demersum HOM05D005347 ORTHO05D021808 3.0e-37 162.5 419 31.5
TAR623G0733 Trochodendron aralioides HOM05D005347 ORTHO05D021808 1.6e-27 130.2 386 29.5
Lju124C41T11 Lonicera japonica HOM05D005347 ORTHO05D021808 8.1e-27 127.9 371 30.2
TAR369G0767 Trochodendron aralioides HOM05D005347 ORTHO05D021808 8.1e-27 127.9 389 29.8
BcaB01g05344 Brassica carinata HOM05D005347 ORTHO05D021808 6.9e-26 124.8 385 30.6
TPR.G7382 Trifolium pratense HOM05D005347 ORTHO05D030226 6.4e-24 118.2 122 42.6
TPR.G20810 Trifolium pratense HOM05D005347 ORTHO05D030226 1.9e-23 116.7 120 42.5
Nn2g10425 Nelumbo nucifera HOM05D005347 ORTHO05D277195 2.7e-06 59.7 142 28.9


User provided reference genes

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