Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre11.g477250 Chlamydomonas reinhardtii HOM05D006141 ORTHO05D007670 4.9e-145 518.1 319 100.0
MCO02G477 Micromonas commoda HOM05D006141 ORTHO05D007670 1.4e-19 101.3 150 39.3
unitig_578.g16642 Utricularia gibba HOM05D006141 ORTHO05D007670 2.5e-08 63.9 101 39.6
Os01g0321800 Oryza sativa ssp. japonica HOM05D006141 ORTHO05D007670 3.3e-08 63.5 111 38.7
MSTRG.21729 Avicennia marina HOM05D006141 ORTHO05D007670 4.3e-08 63.2 96 40.6
Nitab4.5_0000222g0340 Nicotiana tabacum HOM05D006141 ORTHO05D007670 4.3e-08 63.2 107 37.4
PGR042G1406 Punica granatum HOM05D006141 ORTHO05D007670 5.6e-08 62.8 108 37.0
DCAR_012301 Daucus carota HOM05D006141 ORTHO05D007670 9.6e-08 62.0 96 39.6
Duzib138G1179 Durio zibethinus HOM05D006141 ORTHO05D007670 9.6e-08 62.0 101 37.6
ClCG01G007160 Citrullus lanatus HOM05D006141 ORTHO05D007670 1.2e-07 61.6 102 36.3
Migut.D00015 Erythranthe guttata HOM05D006141 ORTHO05D007670 1.2e-07 61.6 99 39.4
Dinv33165 Davidia involucrata HOM05D006141 ORTHO05D007670 1.6e-07 61.2 96 39.6
Hma1.2p1_0408F.1_g146310 Hydrangea macrophylla HOM05D006141 ORTHO05D007670 2.1e-07 60.8 96 39.6
Hma1.2p1_0408F.1_g146320 Hydrangea macrophylla HOM05D006141 ORTHO05D007670 2.1e-07 60.8 96 39.6
Rhsim01G0000200 Rhododendron simsii HOM05D006141 ORTHO05D007670 3.6e-07 60.1 96 37.5
AUR62001013 Chenopodium quinoa HOM05D006141 ORTHO05D007670 4.7e-07 59.7 99 36.4
CsaV3_5G018600 Cucumis sativus L. HOM05D006141 ORTHO05D007670 4.7e-07 59.7 127 33.9
Atru.chr5.866 Acer truncatum HOM05D006141 ORTHO05D007670 6.2e-07 59.3 101 35.6
MELO3C005194.2 Cucumis melo HOM05D006141 ORTHO05D007670 6.2e-07 59.3 127 33.1
Sed0006054 Sechium edule HOM05D006141 ORTHO05D007670 6.2e-07 59.3 102 35.3
THA.LOC104817433 Tarenaya hassleriana HOM05D006141 ORTHO05D007670 6.2e-07 59.3 96 38.5
GSVIVG01028253001 Vitis vinifera HOM05D006141 ORTHO05D007670 6.2e-07 59.3 96 39.6
Nn4g25355 Nelumbo nucifera HOM05D006141 ORTHO05D007670 8.1e-07 58.9 101 36.6
SalBow6G5482 Salvia bowleyana HOM05D006141 ORTHO05D007670 8.1e-07 58.9 99 38.4
AUR62004945 Chenopodium quinoa HOM05D006141 ORTHO05D007670 1.1e-06 58.5 99 36.4
COL.COLO4_23134 Corchorus olitorius HOM05D006141 ORTHO05D007670 1.1e-06 58.5 101 36.6
Gohir.A08G036900 Gossypium hirsutum HOM05D006141 ORTHO05D007670 1.1e-06 58.5 107 34.6
Gorai.004G046700 Gossypium raimondii HOM05D006141 ORTHO05D007670 1.1e-06 58.5 96 37.5
Prupe.3G003000 Prunus persica HOM05D006141 ORTHO05D007670 1.1e-06 58.5 101 36.6
Zm00001eb340460 Zea mays HOM05D006141 ORTHO05D007670 1.1e-06 58.5 101 37.6
arahy.Tifrunner.gnm1.ann1.XETR8R Arachis hypogaea HOM05D006141 ORTHO05D007670 1.4e-06 58.2 96 38.5
Cc01_g21800 Coffea canephora HOM05D006141 ORTHO05D007670 1.4e-06 58.2 96 38.5
Gohir.D08G047500 Gossypium hirsutum HOM05D006141 ORTHO05D007670 1.4e-06 58.2 96 37.5
Solyc01g068150.3 Solanum lycopersicum HOM05D006141 ORTHO05D007670 1.4e-06 58.2 101 36.6
Sopen01g030090 Solanum pennellii HOM05D006141 ORTHO05D007670 1.4e-06 58.2 101 36.6
TAR362G0148 Trochodendron aralioides HOM05D006141 ORTHO05D007670 1.4e-06 58.2 101 37.6
Cpa.g.sc57.10 Carica papaya HOM05D006141 ORTHO05D007670 2.4e-06 57.4 107 34.6
CDE09G0801 Ceratophyllum demersum HOM05D006141 ORTHO05D007670 2.4e-06 57.4 101 35.6
Ciclev10022224m.g Citrus clementina HOM05D006141 ORTHO05D007670 2.4e-06 57.4 96 38.5
Thecc.01G324800 Theobroma cacao HOM05D006141 ORTHO05D007670 2.4e-06 57.4 96 37.5
TPR.G2465 Trifolium pratense HOM05D006141 ORTHO05D007670 2.4e-06 57.4 110 34.5
Actinidia20966 Actinidia chinensis HOM05D006141 ORTHO05D007670 3.1e-06 57.0 96 38.5
FAN28G2755 Fragaria x ananassa HOM05D006141 ORTHO05D007670 3.1e-06 57.0 101 36.6
Manes.01G234600 Manihot esculenta HOM05D006141 ORTHO05D007670 3.1e-06 57.0 96 36.5
RcHm_v2.0_Chr3g0485921 Rosa chinensis HOM05D006141 ORTHO05D007670 3.1e-06 57.0 101 36.6
VMungo1383G2247 Vigna mungo HOM05D006141 ORTHO05D007670 3.1e-06 57.0 102 34.3
Aqoxy2G02498 Aquilegia oxysepala HOM05D006141 ORTHO05D007670 4.0e-06 56.6 101 35.6
arahy.Tifrunner.gnm1.ann1.3ZI6V8 Arachis hypogaea HOM05D006141 ORTHO05D007670 4.0e-06 56.6 96 38.5
arahy.Tifrunner.gnm1.ann1.YFT3VK Arachis hypogaea HOM05D006141 ORTHO05D007670 4.0e-06 56.6 96 38.5
Cfa004908 Carpinus fangiana HOM05D006141 ORTHO05D007670 4.0e-06 56.6 96 36.5
ATR0796G189 Amborella trichopoda HOM05D006141 ORTHO05D007670 5.2e-06 56.2 96 37.5
CSS0000718 Camellia sinensis var. sinensis HOM05D006141 ORTHO05D007670 5.2e-06 56.2 101 35.6
Psat3g016880 Pisum sativum HOM05D006141 ORTHO05D007670 5.2e-06 56.2 110 34.5
TWI59G0338 Tripterygium wilfordii HOM05D006141 ORTHO05D007670 5.2e-06 56.2 115 30.4
CAN.G100.55 Capsicum annuum HOM05D006141 ORTHO05D007670 6.8e-06 55.8 103 35.0
FvH4_1g26260 Fragaria vesca HOM05D006141 ORTHO05D007670 6.8e-06 55.8 101 36.6
FAN19G0972 Fragaria x ananassa HOM05D006141 ORTHO05D007670 6.8e-06 55.8 101 36.6
FAN23G3136 Fragaria x ananassa HOM05D006141 ORTHO05D007670 6.8e-06 55.8 101 36.6
Medtr7g110620 Medicago truncatula HOM05D006141 ORTHO05D007670 6.8e-06 55.8 96 36.5
Potri.014G112900 Populus trichocarpa HOM05D006141 ORTHO05D007670 6.8e-06 55.8 107 33.6
Glyma.03G224200 Glycine max HOM05D006141 ORTHO05D007670 8.9e-06 55.5 101 34.7
Glyma.19G221200 Glycine max HOM05D006141 ORTHO05D007670 8.9e-06 55.5 101 34.7


User provided reference genes

Program Settings