Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre11.g476150 Chlamydomonas reinhardtii HOM05D004727 ORTHO05D005788 1.8e-187 659.1 318 100.0
Os06g0103700 Oryza sativa ssp. japonica HOM05D004727 ORTHO05D005788 1.5e-61 240.7 261 42.5
Pp3c10_5500 Physcomitrium patens HOM05D004727 ORTHO05D005788 2.2e-60 236.9 243 45.7
Duzib205G1763 Durio zibethinus HOM05D004727 ORTHO05D005788 6.3e-60 235.3 262 43.9
Manes.06G152500 Manihot esculenta HOM05D004727 ORTHO05D005788 1.1e-59 234.6 264 42.4
HPP92_025470 Vanilla planifolia HOM05D004727 ORTHO05D005788 1.4e-59 234.2 275 42.9
RcHm_v2.0_Chr1g0378381 Rosa chinensis HOM05D004727 ORTHO05D005788 7.0e-59 231.9 253 44.7
CBR_g727 Chara braunii HOM05D004727 ORTHO05D005788 1.5e-58 230.7 267 42.3
HanXRQChr12g0381081 Helianthus annuus HOM05D004727 ORTHO05D005788 4.5e-58 229.2 260 42.7
PGR042G1629 Punica granatum HOM05D004727 ORTHO05D005788 4.5e-58 229.2 245 44.9
FAN03G1377 Fragaria x ananassa HOM05D004727 ORTHO05D005788 5.9e-58 228.8 269 42.0
Gohir.D11G011600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 5.9e-58 228.8 267 41.9
Gorai.007G013000 Gossypium raimondii HOM05D004727 ORTHO05D005788 5.9e-58 228.8 267 41.9
Mapoly0062s0028 Marchantia polymorpha HOM05D004727 ORTHO05D005788 5.9e-58 228.8 248 42.3
FvH4_7g30250 Fragaria vesca HOM05D004727 ORTHO05D005788 7.7e-58 228.4 269 41.6
ECA232G4896 Erigeron canadensis HOM05D004727 ORTHO05D005788 1.0e-57 228.0 261 41.8
EL10Ac3g05418 Beta vulgaris HOM05D004727 ORTHO05D005788 1.3e-57 227.6 293 40.6
FAN10G1092 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.3e-57 227.6 269 42.0
FAN10G3700 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.3e-57 227.6 269 42.0
CSS0032352 Camellia sinensis var. sinensis HOM05D004727 ORTHO05D005788 1.7e-57 227.3 284 40.5
Hund04788 Selenicereus undatus HOM05D004727 ORTHO05D005788 1.7e-57 227.3 242 43.8
Potri.017G146200 Populus trichocarpa HOM05D004727 ORTHO05D005788 2.9e-57 226.5 266 41.4
Cc02_g02360 Coffea canephora HOM05D004727 ORTHO05D005788 3.8e-57 226.1 267 41.2
Gohir.A08G085600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 5.0e-57 225.7 249 42.6
Eucgr.A02736 Eucalyptus grandis HOM05D004727 ORTHO05D005788 6.5e-57 225.3 270 41.1
Thecc.03G184500 Theobroma cacao HOM05D004727 ORTHO05D005788 6.5e-57 225.3 257 41.6
CAN.G126.29 Capsicum annuum HOM05D004727 ORTHO05D005788 8.5e-57 224.9 282 39.7
Nitab4.5_0000084g0460 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.1e-56 224.6 268 41.4
Solyc03g007900.3 Solanum lycopersicum HOM05D004727 ORTHO05D005788 1.1e-56 224.6 269 40.9
Sopen03g003850 Solanum pennellii HOM05D004727 ORTHO05D005788 1.9e-56 223.8 273 40.3
Atru.chr1.354 Acer truncatum HOM05D004727 ORTHO05D005788 2.5e-56 223.4 255 43.5
BraA01t01653Z Brassica rapa HOM05D004727 ORTHO05D005788 2.5e-56 223.4 261 41.8
Sc25g0000700 Simmondsia chinensis HOM05D004727 ORTHO05D005788 2.5e-56 223.4 263 43.0
A01p16970 Brassica napus HOM05D004727 ORTHO05D005788 4.2e-56 222.6 261 41.4
C01p21250 Brassica napus HOM05D004727 ORTHO05D005788 4.2e-56 222.6 261 41.8
MD01G1208600 Malus domestica HOM05D004727 ORTHO05D005788 4.2e-56 222.6 271 43.2
Gohir.A11G012400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 5.5e-56 222.2 273 40.7
Gohir.D08G109400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 5.5e-56 222.2 249 42.2
Potri.004G073700 Populus trichocarpa HOM05D004727 ORTHO05D005788 5.5e-56 222.2 268 40.7
Prupe.2G301200 Prunus persica HOM05D004727 ORTHO05D005788 7.2e-56 221.9 270 42.2
BolC1t02052H Brassica oleracea HOM05D004727 ORTHO05D005788 1.6e-55 220.7 255 42.4
Gorai.004G117100 Gossypium raimondii HOM05D004727 ORTHO05D005788 1.6e-55 220.7 249 41.8
Nitab4.5_0008522g0030 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.6e-55 220.7 265 40.8
Sed0015096 Sechium edule HOM05D004727 ORTHO05D005788 1.6e-55 220.7 303 36.3
Carub.0007s1524 Capsella rubella HOM05D004727 ORTHO05D005788 2.1e-55 220.3 239 42.7
ATR0661G169 Amborella trichopoda HOM05D004727 ORTHO05D005788 3.6e-55 219.5 245 43.7
Sp7g23750 Schrenkiella parvula HOM05D004727 ORTHO05D005788 3.6e-55 219.5 264 39.8
unitig_0.g2469 Utricularia gibba HOM05D004727 ORTHO05D005788 3.6e-55 219.5 260 40.4
CDE11G0547 Ceratophyllum demersum HOM05D004727 ORTHO05D005788 4.7e-55 219.2 263 41.1
Lsat_1_v5_gn_9_56621 Lactuca sativa HOM05D004727 ORTHO05D005788 4.7e-55 219.2 239 43.1
VMungo0464G1912 Vigna mungo HOM05D004727 ORTHO05D005788 4.7e-55 219.2 267 41.9
FAN06G0456 Fragaria x ananassa HOM05D004727 ORTHO05D005788 6.1e-55 218.8 283 39.6
FAN06G4134 Fragaria x ananassa HOM05D004727 ORTHO05D005788 6.1e-55 218.8 283 39.6
PSO782G5178 Papaver somniferum HOM05D004727 ORTHO05D005788 6.1e-55 218.8 241 42.7
SEGI_23205 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 6.1e-55 218.8 258 41.1
MSTRG.8711 Avicennia marina HOM05D004727 ORTHO05D005788 8.0e-55 218.4 282 39.7
Glyma.09G131600 Glycine max HOM05D004727 ORTHO05D005788 8.0e-55 218.4 295 39.7
COL.COLO4_30213 Corchorus olitorius HOM05D004727 ORTHO05D005788 1.0e-54 218.0 262 39.7
AL7G27320 Arabidopsis lyrata HOM05D004727 ORTHO05D005788 1.8e-54 217.2 235 43.0
CARHR233170 Cardamine hirsuta HOM05D004727 ORTHO05D005788 3.0e-54 216.5 244 41.4
Oeu061663.1 Olea europaea HOM05D004727 ORTHO05D005788 3.0e-54 216.5 262 40.5
Actinidia03138 Actinidia chinensis HOM05D004727 ORTHO05D005788 3.9e-54 216.1 234 43.6
SMO351G0007 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 5.2e-54 215.7 289 39.8
Nitab4.5_0008522g0010 Nicotiana tabacum HOM05D004727 ORTHO05D005788 6.7e-54 215.3 269 39.8
CsaV3_3G017470 Cucumis sativus L. HOM05D004727 ORTHO05D005788 8.8e-54 214.9 279 39.4
Nn1g01641 Nelumbo nucifera HOM05D004727 ORTHO05D005788 8.8e-54 214.9 265 41.1
PSO478G4818 Papaver somniferum HOM05D004727 ORTHO05D005788 8.8e-54 214.9 291 38.8
Aa31sc163G30 Aethionema arabicum HOM05D004727 ORTHO05D005788 1.1e-53 214.5 239 42.3
Thhalv10025771m.g Eutrema salsugineum HOM05D004727 ORTHO05D005788 1.1e-53 214.5 239 42.3
Migut.F00289 Erythranthe guttata HOM05D004727 ORTHO05D005788 1.5e-53 214.2 287 39.7
vmacro09814 Vaccinium macrocarpon HOM05D004727 ORTHO05D005788 1.5e-53 214.2 278 37.8
HPP92_025401 Vanilla planifolia HOM05D004727 ORTHO05D005788 2.0e-53 213.8 229 45.0
unitig_52.g17730 Utricularia gibba HOM05D004727 ORTHO05D005788 4.4e-53 212.6 260 40.4
CBR_g3311 Chara braunii HOM05D004727 ORTHO05D005788 5.7e-53 212.2 242 43.4
CBR_g3313 Chara braunii HOM05D004727 ORTHO05D005788 5.7e-53 212.2 242 43.4
Solyc03g007920.4 Solanum lycopersicum HOM05D004727 ORTHO05D005788 7.4e-53 211.8 263 39.9
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 9.7e-53 211.5 290 37.9
CAN.G126.24 Capsicum annuum HOM05D004727 ORTHO05D005788 1.3e-52 211.1 263 39.9
Sabra04G0048400 Salix brachista HOM05D004727 ORTHO05D005788 1.7e-52 210.7 274 40.5
Sopen03g003870 Solanum pennellii HOM05D004727 ORTHO05D005788 1.7e-52 210.7 263 39.9
PGSC0003DMG400009500 Solanum tuberosum HOM05D004727 ORTHO05D005788 1.7e-52 210.7 259 39.4
Aqoxy7G00234 Aquilegia oxysepala HOM05D004727 ORTHO05D005788 2.2e-52 210.3 288 38.5
Duzib068G1006 Durio zibethinus HOM05D004727 ORTHO05D005788 2.8e-52 209.9 225 44.9
Phvul.004G107900 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 3.7e-52 209.5 271 40.2
Ah.06g181400 Amaranthus hybridus HOM05D004727 ORTHO05D005788 4.8e-52 209.1 251 39.4
Lalb_Chr03g0034881 Lupinus albus HOM05D004727 ORTHO05D005788 1.1e-51 208.0 247 43.3
Glyma.16G178900 Glycine max HOM05D004727 ORTHO05D005788 1.4e-51 207.6 295 38.3
Rhsim09G0200700 Rhododendron simsii HOM05D004727 ORTHO05D005788 1.8e-51 207.2 299 37.5
Peaxi162Scf00444g00244 Petunia axillaris HOM05D004727 ORTHO05D005788 2.4e-51 206.8 294 36.7
Manes.06G152600 Manihot esculenta HOM05D004727 ORTHO05D005788 5.3e-51 205.7 235 43.0
GSVIVG01028857001 Vitis vinifera HOM05D004727 ORTHO05D005788 5.3e-51 205.7 246 39.4
Lalb_Chr19g0130641 Lupinus albus HOM05D004727 ORTHO05D005788 1.2e-50 204.5 256 41.4
Nitab4.5_0000084g0450 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.2e-50 204.5 318 35.2
Hund11719 Selenicereus undatus HOM05D004727 ORTHO05D005788 1.6e-50 204.1 300 39.0
HanXRQChr05g0130171 Helianthus annuus HOM05D004727 ORTHO05D005788 4.5e-50 202.6 260 36.9
Psat0ss29864g0280 Pisum sativum HOM05D004727 ORTHO05D005788 7.7e-50 201.8 296 38.5
TPR.G33517 Trifolium pratense HOM05D004727 ORTHO05D005788 7.7e-50 201.8 284 38.7
VMungo0464G2071 Vigna mungo HOM05D004727 ORTHO05D005788 7.7e-50 201.8 262 37.8
Medtr0057s0130 Medicago truncatula HOM05D004727 ORTHO05D005788 1.3e-49 201.1 263 39.9
Glyma.09G131900 Glycine max HOM05D004727 ORTHO05D005788 1.7e-49 200.7 270 38.1
MCO01G501 Micromonas commoda HOM05D004727 ORTHO05D005788 2.9e-49 199.9 271 39.5
CiPaw.05G262100 Carya illinoinensis HOM05D004727 ORTHO05D005788 3.8e-49 199.5 214 43.9
ClCG05G008410 Citrullus lanatus HOM05D004727 ORTHO05D005788 3.8e-49 199.5 309 34.6
SGA_v2.0_scaffold60G21112 Striga asiatica HOM05D004727 ORTHO05D005788 3.8e-49 199.5 272 39.0
Medtr0057s0080 Medicago truncatula HOM05D004727 ORTHO05D005788 5.0e-49 199.1 306 36.3
PRCOL_00002776 Prasinoderma coloniale HOM05D004727 ORTHO05D005788 5.0e-49 199.1 305 34.8
Phvul.004G108600 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 1.1e-48 198.0 244 39.3
Ca_23692_v3 Cicer arietinum L. HOM05D004727 ORTHO05D005788 1.5e-48 197.6 301 36.9
AUR62031423 Chenopodium quinoa HOM05D004727 ORTHO05D005788 3.2e-48 196.4 288 36.8
CANSAT21G0167 Cannabis sativa HOM05D004727 ORTHO05D005788 4.2e-48 196.1 270 37.4
CANSAT21G2173 Cannabis sativa HOM05D004727 ORTHO05D005788 4.2e-48 196.1 270 37.4
SalBow4G1885 Salvia bowleyana HOM05D004727 ORTHO05D005788 9.4e-48 194.9 324 34.9
AT4G25720 Arabidopsis thaliana HOM05D004727 ORTHO05D005788 1.6e-47 194.1 223 41.3
AUR62021119 Chenopodium quinoa HOM05D004727 ORTHO05D005788 3.6e-47 193.0 283 36.4
Lj2g0018940 Lotus japonicus HOM05D004727 ORTHO05D005788 1.4e-46 191.0 250 39.2
Haze_00047 Corylus avellana HOM05D004727 ORTHO05D005788 2.3e-46 190.3 322 33.5
Cpa.g.sc107.111 Carica papaya HOM05D004727 ORTHO05D005788 3.0e-46 189.9 270 39.3
MELO3C006936.2 Cucumis melo HOM05D004727 ORTHO05D005788 4.0e-46 189.5 285 34.4
Dinv35254 Davidia involucrata HOM05D004727 ORTHO05D005788 4.0e-46 189.5 205 43.4
Glyma.09G131800 Glycine max HOM05D004727 ORTHO05D005788 9.7e-45 184.9 250 37.2
Lalb_Chr19g0130651 Lupinus albus HOM05D004727 ORTHO05D005788 2.8e-44 183.3 283 35.0
EL10Ac4g07582 Beta vulgaris HOM05D004727 ORTHO05D005788 3.5e-42 176.4 337 31.5
arahy.Tifrunner.gnm1.ann1.G1I5XM Arachis hypogaea HOM05D004727 ORTHO05D005788 3.6e-39 166.4 248 37.1
SMO231G0015 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 8.8e-38 161.8 202 41.1
MSTRG.27085 Avicennia marina HOM05D004727 ORTHO05D005788 1.5e-37 161.0 206 38.8
FAN03G2629 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.5e-37 161.0 226 37.2
Ciclev10005858m.g Citrus clementina HOM05D004727 ORTHO05D005788 1.7e-36 157.5 176 42.0
AUR62017096 Chenopodium quinoa HOM05D004727 ORTHO05D005788 4.8e-36 156.0 188 39.4
AUR62036451 Chenopodium quinoa HOM05D004727 ORTHO05D005788 2.4e-35 153.7 212 35.8
Zm00001eb268480 Zea mays HOM05D004727 ORTHO05D005788 1.0e-33 148.3 173 39.3
arahy.Tifrunner.gnm1.ann1.NE53A1 Arachis hypogaea HOM05D004727 ORTHO05D005788 1.2e-31 141.4 217 35.0
QL09p012782 Quercus lobata HOM05D004727 ORTHO05D005788 2.2e-28 130.6 137 41.6
Actinidia31840 Actinidia chinensis HOM05D004727 ORTHO05D005788 4.9e-28 129.4 150 41.3
MBI12_g08716_MAGBIO Magnolia biondii HOM05D004727 ORTHO05D005788 1.8e-27 127.5 205 33.2
Ah.13g069160 Amaranthus hybridus HOM05D004727 ORTHO05D005788 7.0e-27 125.6 164 39.0
AUR62036407 Chenopodium quinoa HOM05D004727 ORTHO05D005788 2.0e-26 124.0 194 34.0
AagrBONN_evm.TU.Sc2ySwM_344.2696 Anthoceros agrestis HOM05D004727 ORTHO05D005788 3.9e-25 119.8 180 38.9
Peaxi162Scf00444g00021 Petunia axillaris HOM05D004727 ORTHO05D005788 6.6e-25 119.0 205 30.2
DCAR_024607 Daucus carota HOM05D004727 ORTHO05D005788 8.6e-25 118.6 171 37.4
DCAR_008880 Daucus carota HOM05D001628 ORTHO05D001568 8.0e-23 112.1 119 44.5
arahy.Tifrunner.gnm1.ann1.FZN7A9 Arachis hypogaea HOM05D004727 ORTHO05D005788 7.5e-21 105.5 188 34.0
SEGI_30519 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 9.8e-21 105.1 94 48.9
Mapoly1114s0001 Marchantia polymorpha HOM05D004727 ORTHO05D005788 2.0e-13 80.9 73 47.9
Actinidia31841 Actinidia chinensis HOM05D004727 ORTHO05D005788 4.4e-13 79.7 147 35.4
SEGI_06548 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 2.4e-11 73.9 63 50.8
EL10Ac4g07580 Beta vulgaris HOM05D004727 ORTHO05D005788 7.0e-11 72.4 95 36.8
FAN01G2810 Fragaria x ananassa HOM05D000427 ORTHO05D000386 4.6e-10 69.7 80 43.8
TWI39G0716 Tripterygium wilfordii HOM05D001943 ORTHO05D001969 1.5e-08 64.7 75 45.3
Ciclev10006767m.g Citrus clementina HOM05D004727 ORTHO05D005788 1.9e-08 64.3 55 52.7


User provided reference genes

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