Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre11.g468400 Chlamydomonas reinhardtii HOM05D002472 ORTHO05D141381 2.3e-237 825.5 520 100.0
CBR_g11898 Chara braunii HOM05D002472 ORTHO05D002827 4.7e-12 77.0 205 29.3
HanXRQChr10g0295211 Helianthus annuus HOM05D002472 ORTHO05D002827 4.8e-09 67.0 212 29.7
MCO12G238 Micromonas commoda HOM05D002472 ORTHO05D002827 6.3e-09 66.6 205 27.3
ECA238G3450 Erigeron canadensis HOM05D002472 ORTHO05D002827 1.1e-08 65.9 75 45.3
SalBow3G1967 Salvia bowleyana HOM05D002472 ORTHO05D002827 1.1e-08 65.9 209 27.8
Manes.03G179100 Manihot esculenta HOM05D002472 ORTHO05D002827 1.4e-08 65.5 239 27.2
FAN09G2813 Fragaria x ananassa HOM05D002472 ORTHO05D002827 5.4e-08 63.5 71 45.1
COL.COLO4_15282 Corchorus olitorius HOM05D002472 ORTHO05D002827 9.1e-08 62.8 233 27.9
Hund22109 Selenicereus undatus HOM05D002472 ORTHO05D002827 9.1e-08 62.8 212 30.2
COL.COLO4_15279 Corchorus olitorius HOM05D002472 ORTHO05D002827 1.2e-07 62.4 241 26.6
Migut.N01927 Erythranthe guttata HOM05D002472 ORTHO05D002827 1.6e-07 62.0 211 28.9
PRCOL_00000363 Prasinoderma coloniale HOM05D002472 ORTHO05D002827 1.6e-07 62.0 233 25.8
SGA_v2.0_scaffold196G40956 Striga asiatica HOM05D002472 ORTHO05D002827 2.7e-07 61.2 212 28.3
HanXRQChr10g0295201 Helianthus annuus HOM05D002472 ORTHO05D002827 3.5e-07 60.8 228 27.6
unitig_899.g15577 Utricularia gibba HOM05D002472 ORTHO05D002827 3.5e-07 60.8 211 28.0
Ciclev10001390m.g Citrus clementina HOM05D002472 ORTHO05D002827 4.5e-07 60.5 234 26.1
Eucgr.H04386 Eucalyptus grandis HOM05D002472 ORTHO05D002827 4.5e-07 60.5 210 27.1
CANSAT54G0369 Cannabis sativa HOM05D002472 ORTHO05D002827 5.9e-07 60.1 234 26.9
CAN.G134.169 Capsicum annuum HOM05D002472 ORTHO05D002827 5.9e-07 60.1 236 28.0
Gohir.A02G032000 Gossypium hirsutum HOM05D002472 ORTHO05D002827 5.9e-07 60.1 249 24.5
Gohir.A11G255600 Gossypium hirsutum HOM05D002472 ORTHO05D002827 5.9e-07 60.1 210 27.6
Gorai.007G285400 Gossypium raimondii HOM05D002472 ORTHO05D002827 5.9e-07 60.1 210 27.6
Lalb_Chr18g0045101 Lupinus albus HOM05D002472 ORTHO05D002827 5.9e-07 60.1 212 27.8
FAN14G3559 Fragaria x ananassa HOM05D002472 ORTHO05D002827 7.7e-07 59.7 241 28.2
Nitab4.5_0002361g0140 Nicotiana tabacum HOM05D002472 ORTHO05D002827 7.7e-07 59.7 236 27.5
PSO210G6821 Papaver somniferum HOM05D002472 ORTHO05D002827 7.7e-07 59.7 211 26.5
PGSC0003DMG400022472 Solanum tuberosum HOM05D002472 ORTHO05D002827 7.7e-07 59.7 236 27.5
Duzib128G0462 Durio zibethinus HOM05D002472 ORTHO05D002827 1.0e-06 59.3 234 26.5
HanXRQChr10g0295231 Helianthus annuus HOM05D002472 ORTHO05D002827 1.0e-06 59.3 212 27.8
Sopen01g041460 Solanum pennellii HOM05D002472 ORTHO05D002827 1.0e-06 59.3 236 27.5
FAN05G2994 Fragaria x ananassa HOM05D002472 ORTHO05D002827 1.3e-06 58.9 222 27.0
FAN05G4815 Fragaria x ananassa HOM05D002472 ORTHO05D002827 1.3e-06 58.9 222 27.0
Sabra15G0050500 Salix brachista HOM05D002472 ORTHO05D002827 1.3e-06 58.9 75 37.3
Sabra15G0074400 Salix brachista HOM05D002472 ORTHO05D002827 1.3e-06 58.9 75 37.3
CsaV3_1G045680 Cucumis sativus L. HOM05D002472 ORTHO05D002827 1.7e-06 58.5 209 27.3
PSO832G0752 Papaver somniferum HOM05D002472 ORTHO05D002827 1.7e-06 58.5 211 26.5
Potri.005G049500 Populus trichocarpa HOM05D002472 ORTHO05D002827 1.7e-06 58.5 211 27.5
Thecc.05G289000 Theobroma cacao HOM05D002472 ORTHO05D002827 1.7e-06 58.5 209 26.8
COL.COLO4_15277 Corchorus olitorius HOM05D002472 ORTHO05D002827 2.2e-06 58.2 224 25.0
Gohir.D11G265400 Gossypium hirsutum HOM05D002472 ORTHO05D002827 2.2e-06 58.2 75 37.3
HanXRQChr14g0446141 Helianthus annuus HOM05D002472 ORTHO05D002827 2.2e-06 58.2 222 26.1
Nitab4.5_0002840g0020 Nicotiana tabacum HOM05D002472 ORTHO05D002827 2.2e-06 58.2 237 27.4
PSO210G6908 Papaver somniferum HOM05D002472 ORTHO05D002827 2.2e-06 58.2 221 24.0
Rhsim07G0175700 Rhododendron simsii HOM05D002472 ORTHO05D002827 2.2e-06 58.2 75 37.3
RcHm_v2.0_Chr3g0452041 Rosa chinensis HOM05D002472 ORTHO05D002827 2.2e-06 58.2 206 27.7
Cfa006468 Carpinus fangiana HOM05D002472 ORTHO05D002827 2.9e-06 57.8 235 27.2
AUR62000974 Chenopodium quinoa HOM05D002472 ORTHO05D002827 2.9e-06 57.8 235 26.4
COL.COLO4_15281 Corchorus olitorius HOM05D002472 ORTHO05D002827 2.9e-06 57.8 205 26.8
Hma1.2p1_0332F.1_g127690 Hydrangea macrophylla HOM05D002472 ORTHO05D002827 2.9e-06 57.8 209 27.3
Lsat_1_v5_gn_2_65020 Lactuca sativa HOM05D002472 ORTHO05D002827 2.9e-06 57.8 212 28.3
MD12G1236800 Malus domestica HOM05D002472 ORTHO05D002827 2.9e-06 57.8 212 28.3
Sed0025137 Sechium edule HOM05D002472 ORTHO05D002827 2.9e-06 57.8 209 27.8
AagrBONN_evm.TU.Sc2ySwM_368.470 Anthoceros agrestis HOM05D002472 ORTHO05D002827 3.8e-06 57.4 209 25.8
Aqoxy6G02478 Aquilegia oxysepala HOM05D002472 ORTHO05D002827 3.8e-06 57.4 205 26.8
CSS0020760 Camellia sinensis var. sinensis HOM05D002472 ORTHO05D002827 3.8e-06 57.4 210 26.7
ECA238G2290 Erigeron canadensis HOM05D002472 ORTHO05D001990 3.8e-06 57.4 209 27.3
FAN14G3949 Fragaria x ananassa HOM05D002472 ORTHO05D002827 3.8e-06 57.4 68 39.7
Glyma.03G245400 Glycine max HOM05D002472 ORTHO05D002827 3.8e-06 57.4 75 37.3
Gohir.D02G038700 Gossypium hirsutum HOM05D002472 ORTHO05D002827 3.8e-06 57.4 249 24.5
Medtr8g465010 Medicago truncatula HOM05D002472 ORTHO05D002827 3.8e-06 57.4 75 36.0
PGR004G0868 Punica granatum HOM05D002472 ORTHO05D002827 3.8e-06 57.4 234 26.5
vmacro05069 Vaccinium macrocarpon HOM05D002472 ORTHO05D002827 3.8e-06 57.4 210 26.7
Gorai.005G042600 Gossypium raimondii HOM05D002472 ORTHO05D002827 5.0e-06 57.0 248 24.2
MD04G1220400 Malus domestica HOM05D002472 ORTHO05D002827 5.0e-06 57.0 209 27.8
arahy.Tifrunner.gnm1.ann1.PGP8Y3 Arachis hypogaea HOM05D002472 ORTHO05D002827 6.5e-06 56.6 72 37.5
CiPaw.08G179100 Carya illinoinensis HOM05D002472 ORTHO05D002827 6.5e-06 56.6 235 27.2
Prupe.6G339400 Prunus persica HOM05D002472 ORTHO05D002827 6.5e-06 56.6 209 27.3
RcHm_v2.0_Chr3g0452121 Rosa chinensis HOM05D002472 ORTHO05D002827 6.5e-06 56.6 210 27.1
THA.LOC104821125 Tarenaya hassleriana HOM05D002472 ORTHO05D002827 6.5e-06 56.6 235 27.7
ATR0737G105 Amborella trichopoda HOM05D002472 ORTHO05D002827 8.5e-06 56.2 211 28.9
Lj1g0020326 Lotus japonicus HOM05D002472 ORTHO05D002827 8.5e-06 56.2 212 27.4


User provided reference genes

Program Settings