Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre10.g452450 Chlamydomonas reinhardtii HOM05D003801 ORTHO05D004812 0.0e+00 1938.3 1047 100.0
CBR_g29785 Chara braunii HOM05D003801 ORTHO05D004812 2.5e-129 467.6 956 33.3
Pp3c17_6540 Physcomitrium patens HOM05D003801 ORTHO05D004812 4.8e-125 453.4 1013 32.4
PRCOL_00000154 Prasinoderma coloniale HOM05D003801 ORTHO05D004812 2.2e-122 444.5 1096 30.3
Mapoly0002s0142 Marchantia polymorpha HOM05D003801 ORTHO05D004812 5.5e-121 439.9 994 32.2
EL10Ac7g15867 Beta vulgaris HOM05D003801 ORTHO05D004812 1.5e-118 431.8 1022 30.9
AUR62009720 Chenopodium quinoa HOM05D003801 ORTHO05D004812 1.5e-118 431.8 944 31.8
Sed0013919 Sechium edule HOM05D003801 ORTHO05D004812 1.5e-118 431.8 970 31.6
SMO347G0592 Selaginella moellendorffii HOM05D003801 ORTHO05D004812 1.5e-118 431.8 993 31.2
Cpa.g.sc173.16 Carica papaya HOM05D003801 ORTHO05D004812 2.6e-118 431.0 964 31.1
AUR62036227 Chenopodium quinoa HOM05D003801 ORTHO05D004812 3.4e-118 430.6 1026 30.1
HanXRQChr08g0228441 Helianthus annuus HOM05D003801 ORTHO05D004812 2.8e-117 427.6 946 32.0
PGR004G1069 Punica granatum HOM05D003801 ORTHO05D004812 2.8e-117 427.6 991 30.8
SEGI_40714 Sequoiadendron giganteum HOM05D003801 ORTHO05D004812 2.8e-117 427.6 958 30.8
CsaV3_1G036690 Cucumis sativus L. HOM05D003801 ORTHO05D004812 3.7e-117 427.2 976 31.1
FvH4_3g40080 Fragaria vesca HOM05D003801 ORTHO05D004812 6.3e-117 426.4 1021 30.8
Atru.chr1.2566 Acer truncatum HOM05D003801 ORTHO05D004812 1.1e-116 425.6 960 31.1
VMungo0647G2088 Vigna mungo HOM05D003801 ORTHO05D004812 1.8e-116 424.9 913 31.9
CiPaw.13G066600 Carya illinoinensis HOM05D003801 ORTHO05D004812 2.4e-116 424.5 981 31.2
ECA247G0395 Erigeron canadensis HOM05D003801 ORTHO05D004812 2.4e-116 424.5 944 32.0
Psat2g052760 Pisum sativum HOM05D003801 ORTHO05D004812 2.4e-116 424.5 913 31.7
ATR0584G141 Amborella trichopoda HOM05D003801 ORTHO05D004812 5.4e-116 423.3 971 30.4
RcHm_v2.0_Chr5g0072271 Rosa chinensis HOM05D003801 ORTHO05D004812 7.0e-116 422.9 986 30.8
MSTRG.18544 Avicennia marina HOM05D003801 ORTHO05D004812 1.2e-115 422.2 958 30.4
FAN21G1607 Fragaria x ananassa HOM05D003801 ORTHO05D004812 3.5e-115 420.6 1028 30.5
LjContig00141g0011314 Lotus japonicus HOM05D003801 ORTHO05D004812 4.5e-115 420.2 966 30.5
Phvul.008G250000 Phaseolus vulgaris HOM05D003801 ORTHO05D004812 7.7e-115 419.5 976 31.4
Glyma.14G201500 Glycine max HOM05D003801 ORTHO05D004812 1.0e-114 419.1 976 31.4
GSVIVG01024601001 Vitis vinifera HOM05D003801 ORTHO05D004812 1.0e-114 419.1 967 31.1
Prupe.6G045000 Prunus persica HOM05D003801 ORTHO05D004812 1.7e-114 418.3 1024 30.1
MSTRG.17901 Avicennia marina HOM05D003801 ORTHO05D004812 2.3e-114 417.9 959 31.1
Ca_05689_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 2.3e-114 417.9 968 30.5
MD03G1058800 Malus domestica HOM05D003801 ORTHO05D004812 3.8e-114 417.2 1017 30.8
Aa31LG5G6380 Aethionema arabicum HOM05D003801 ORTHO05D004812 5.0e-114 416.8 961 30.6
Nn5g27878 Nelumbo nucifera HOM05D003801 ORTHO05D004812 6.6e-114 416.4 989 30.8
QL01p018072 Quercus lobata HOM05D003801 ORTHO05D004812 6.6e-114 416.4 915 31.7
Eucgr.B04013 Eucalyptus grandis HOM05D003801 ORTHO05D004812 8.6e-114 416.0 966 31.6
Nn1g08532 Nelumbo nucifera HOM05D003801 ORTHO05D004812 1.5e-113 415.2 987 31.0
AL1G16990 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 1.9e-113 414.8 921 31.5
AT1G06950 Arabidopsis thaliana HOM05D003801 ORTHO05D004812 1.9e-113 414.8 921 31.1
Carub.0001s0624 Capsella rubella HOM05D003801 ORTHO05D004812 1.9e-113 414.8 921 31.4
Cfa011800 Carpinus fangiana HOM05D003801 ORTHO05D004812 2.5e-113 414.5 1037 30.7
Thecc.09G360800 Theobroma cacao HOM05D003801 ORTHO05D004812 2.5e-113 414.5 969 30.5
A08p35840 Brassica napus HOM05D003801 ORTHO05D004812 3.3e-113 414.1 919 30.8
BraA08t35491Z Brassica rapa HOM05D003801 ORTHO05D004812 4.2e-113 413.7 919 30.8
FAN11G2663 Fragaria x ananassa HOM05D003801 ORTHO05D004812 4.2e-113 413.7 1051 30.1
CARHR006620 Cardamine hirsuta HOM05D003801 ORTHO05D004812 5.5e-113 413.3 938 30.8
TAR369G0201 Trochodendron aralioides HOM05D003801 ORTHO05D004812 7.2e-113 412.9 910 31.1
CAN.G1702.5 Capsicum annuum HOM05D003801 ORTHO05D004812 9.5e-113 412.5 955 30.5
Glyma.02G233700 Glycine max HOM05D003801 ORTHO05D004812 9.5e-113 412.5 949 30.6
Gohir.D03G144200 Gossypium hirsutum HOM05D003801 ORTHO05D004812 9.5e-113 412.5 1017 29.9
ClCG03G000210 Citrullus lanatus HOM05D003801 ORTHO05D004812 1.6e-112 411.8 1006 30.4
Gorai.003G151500 Gossypium raimondii HOM05D003801 ORTHO05D004812 1.6e-112 411.8 1017 29.9
Lalb_Chr10g0103681 Lupinus albus HOM05D003801 ORTHO05D004812 2.8e-112 411.0 977 30.7
Sabra19G0130000 Salix brachista HOM05D003801 ORTHO05D004812 2.8e-112 411.0 966 31.3
Hund05047 Selenicereus undatus HOM05D003801 ORTHO05D004812 2.8e-112 411.0 963 30.6
SGA_v2.0_scaffold20G09298 Striga asiatica HOM05D003801 ORTHO05D004812 6.1e-112 409.8 999 30.2
Oeu044915.1 Olea europaea HOM05D003801 ORTHO05D004812 8.0e-112 409.5 960 30.8
Manes.18G140750 Manihot esculenta HOM05D003801 ORTHO05D004812 1.4e-111 408.7 946 31.0
TPR.G24942 Trifolium pratense HOM05D003801 ORTHO05D004812 1.4e-111 408.7 962 31.2
Thhalv10006671m.g Eutrema salsugineum HOM05D003801 ORTHO05D004812 1.8e-111 408.3 970 30.2
MD11G1060900 Malus domestica HOM05D003801 ORTHO05D004812 3.0e-111 407.5 1010 30.4
Medtr5g074690 Medicago truncatula HOM05D003801 ORTHO05D004812 3.0e-111 407.5 1029 30.1
TAR623G1445 Trochodendron aralioides HOM05D003801 ORTHO05D004812 3.0e-111 407.5 961 30.5
DCAR_028861 Daucus carota HOM05D003801 ORTHO05D004812 5.2e-111 406.8 963 30.5
PSO384G0852 Papaver somniferum HOM05D003801 ORTHO05D004812 5.2e-111 406.8 959 32.2
Migut.D00836 Erythranthe guttata HOM05D003801 ORTHO05D004812 6.8e-111 406.4 959 30.7
Gohir.A03G024300 Gossypium hirsutum HOM05D003801 ORTHO05D004812 6.8e-111 406.4 1017 29.7
CDE04G3388 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 8.9e-111 406.0 921 30.3
Psat5g150840 Pisum sativum HOM05D003801 ORTHO05D004812 1.2e-110 405.6 971 30.9
Sc17g0002560 Simmondsia chinensis HOM05D003801 ORTHO05D004812 1.5e-110 405.2 906 32.5
C08p02740 Brassica napus HOM05D003801 ORTHO05D004812 2.0e-110 404.8 973 30.0
Sabra19G0125000 Salix brachista HOM05D003801 ORTHO05D004812 2.0e-110 404.8 974 31.1
BcaC05g24660 Brassica carinata HOM05D003801 ORTHO05D004812 2.6e-110 404.4 915 30.2
COL.COLO4_11183 Corchorus olitorius HOM05D003801 ORTHO05D004812 2.6e-110 404.4 935 30.9
Haze_24439 Corylus avellana HOM05D003801 ORTHO05D004812 2.6e-110 404.4 1037 29.4
BolC5t29277H Brassica oleracea HOM05D003801 ORTHO05D004812 3.4e-110 404.1 915 30.2
BraA10t42811Z Brassica rapa HOM05D003801 ORTHO05D004812 3.4e-110 404.1 928 30.3
PSO339G1799 Papaver somniferum HOM05D003801 ORTHO05D004812 3.4e-110 404.1 959 32.1
MCO16G620 Micromonas commoda HOM05D003801 ORTHO05D004812 5.7e-110 403.3 986 30.6
TPR.G17744 Trifolium pratense HOM05D003801 ORTHO05D004812 7.5e-110 402.9 871 30.9
Zm00001eb044910 Zea mays HOM05D003801 ORTHO05D004812 7.5e-110 402.9 927 31.3
Cc01_g15070 Coffea canephora HOM05D003801 ORTHO05D004812 9.8e-110 402.5 960 30.3
Potri.019G127000 Populus trichocarpa HOM05D003801 ORTHO05D004812 2.8e-109 401.0 944 30.0
Actinidia32598 Actinidia chinensis HOM05D003801 ORTHO05D004812 3.7e-109 400.6 957 30.7
Sp1g05660 Schrenkiella parvula HOM05D003801 ORTHO05D004812 3.7e-109 400.6 919 30.0
TWI79G0650 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 3.7e-109 400.6 989 30.2
CANSAT54G0450 Cannabis sativa HOM05D003801 ORTHO05D004812 4.9e-109 400.2 1000 30.4
Duzib168G2305 Durio zibethinus HOM05D003801 ORTHO05D004812 4.9e-109 400.2 952 30.1
TWI75G1891 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 4.9e-109 400.2 961 30.0
Aqoxy2G00749 Aquilegia oxysepala HOM05D003801 ORTHO05D004812 4.1e-108 397.1 942 31.4
Potri.013G154300 Populus trichocarpa HOM05D003801 ORTHO05D004812 4.1e-108 397.1 1017 30.3
Medtr3g466170 Medicago truncatula HOM05D003801 ORTHO05D004812 7.0e-108 396.4 968 30.1
Peaxi162Scf00095g00168 Petunia axillaris HOM05D003801 ORTHO05D004812 7.0e-108 396.4 945 31.7
CSS0002946 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 2.0e-107 394.8 958 30.0
Lsat_1_v5_gn_9_14381 Lactuca sativa HOM05D003801 ORTHO05D004812 2.0e-107 394.8 970 31.0
Hma1.2p1_1637F.1_g294880 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 7.8e-107 392.9 964 30.2
Sopen09g014770 Solanum pennellii HOM05D003801 ORTHO05D004812 2.3e-106 391.3 913 31.5
FAN25G2625 Fragaria x ananassa HOM05D003801 ORTHO05D004812 3.9e-106 390.6 975 30.5
Solyc09g031780.3 Solanum lycopersicum HOM05D003801 ORTHO05D004812 3.9e-106 390.6 912 30.9
FAN16G2780 Fragaria x ananassa HOM05D003801 ORTHO05D004812 8.0e-104 382.9 1080 29.0
arahy.Tifrunner.gnm1.ann1.Z7TKRX Arachis hypogaea HOM05D003801 ORTHO05D004812 1.0e-103 382.5 1025 28.9
Glyma.18G055700 Glycine max HOM05D003801 ORTHO05D004812 2.3e-103 381.3 967 30.0
A10p05480 Brassica napus HOM05D003801 ORTHO05D004812 3.1e-103 380.9 975 29.2
unitig_747.g21451 Utricularia gibba HOM05D003801 ORTHO05D004812 2.6e-102 377.9 964 29.0
Rhsim13G0062300 Rhododendron simsii HOM05D003801 ORTHO05D004812 3.4e-102 377.5 1020 28.6
Atru.chr1.2574 Acer truncatum HOM05D003801 ORTHO05D004812 7.5e-102 376.3 808 31.3
Ciclev10000209m.g Citrus clementina HOM05D003801 ORTHO05D004812 2.2e-101 374.8 875 31.2
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 1.9e-100 371.7 1013 28.4
Sabra13G0124100 Salix brachista HOM05D003801 ORTHO05D004812 4.1e-100 370.5 1070 27.9
Lj1A123G49 Lonicera japonica HOM05D003801 ORTHO05D004812 1.3e-98 365.5 966 29.5
Ca_13017_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 6.6e-98 363.2 972 29.0
vmacro02901 Vaccinium macrocarpon HOM05D003801 ORTHO05D004812 2.5e-97 361.3 967 29.2
MELO3C020500.2 Cucumis melo HOM05D003801 ORTHO05D004812 2.8e-96 357.8 800 31.1
Lj1A124T30 Lonicera japonica HOM05D003801 ORTHO05D004812 2.0e-94 351.7 769 30.9
Dinv28708 Davidia involucrata HOM05D003801 ORTHO05D004812 3.5e-91 340.9 802 29.6
Eucgr.I01027 Eucalyptus grandis HOM05D003801 ORTHO05D004812 6.6e-90 336.7 733 32.7
Cc01_g14930 Coffea canephora HOM05D003801 ORTHO05D004812 1.0e-82 312.8 661 31.2
Pp3c14_10270 Physcomitrium patens HOM05D003801 ORTHO05D004812 1.7e-77 295.4 725 30.3
Nitab4.5_0004906g0050 Nicotiana tabacum HOM05D003801 ORTHO05D004812 8.4e-77 293.1 689 31.1
Os10g0492000 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 8.1e-72 276.6 631 31.5
BcaB03g13435 Brassica carinata HOM05D003801 ORTHO05D004812 9.9e-70 269.6 527 31.9
Nitab4.5_0000486g0130 Nicotiana tabacum HOM05D003801 ORTHO05D004812 1.6e-67 262.3 533 33.2
Nitab4.5_0004637g0060 Nicotiana tabacum HOM05D003801 ORTHO05D004812 2.1e-64 251.9 531 33.0
Dinv12255 Davidia involucrata HOM05D003801 ORTHO05D004812 2.3e-58 231.9 521 31.1
Hma1.2p1_1421F.1_g282490 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 4.8e-56 224.2 471 31.8
HPP92_014541 Vanilla planifolia HOM05D003801 ORTHO05D004812 4.2e-44 184.5 607 25.0
BcaB02g06769 Brassica carinata HOM05D003801 ORTHO05D004812 7.4e-41 173.7 467 30.0
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 1.5e-38 166.0 337 32.6
Sabra19G0124700 Salix brachista HOM05D003801 ORTHO05D004812 3.4e-38 164.9 327 31.5
Sabra19G0125200 Salix brachista HOM05D003801 ORTHO05D004812 9.4e-36 156.8 557 29.1
SHI19243 Sapria himalayana HOM05D003801 ORTHO05D004812 3.6e-35 154.8 624 24.0
HPP92_014542 Vanilla planifolia HOM05D003801 ORTHO05D004812 1.4e-34 152.9 276 36.2
Os10g0492300 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 4.1e-31 141.4 404 29.7
MBI15_g33038_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 3.8e-29 134.8 239 36.4
MBI07_g35968_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 2.5e-28 132.1 242 36.4
Dinv12256 Davidia involucrata HOM05D003801 ORTHO05D004812 7.4e-25 120.6 295 28.5
Sabra19G0125300 Salix brachista HOM05D003801 ORTHO05D004812 1.3e-24 119.8 263 29.3
Oeu050040.1 Olea europaea HOM05D003801 ORTHO05D004812 1.7e-24 119.4 316 29.4
Lj6A615T90 Lonicera japonica HOM05D003801 ORTHO05D004812 2.8e-24 118.6 247 32.0
Sabra19G0125100 Salix brachista HOM05D003801 ORTHO05D004812 7.7e-22 110.5 249 28.1
Actinidia23184 Actinidia chinensis HOM05D003801 ORTHO05D004812 5.0e-21 107.8 253 30.0
CANSAT80G1859 Cannabis sativa HOM05D003801 ORTHO05D004812 3.2e-20 105.1 134 41.0
AL1G17110 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 3.9e-18 98.2 225 27.1
Oeu050039.1 Olea europaea HOM05D003801 ORTHO05D004812 8.8e-18 97.1 489 25.4
QL05p055919 Quercus lobata HOM05D003801 ORTHO05D004812 2.6e-17 95.5 411 26.5
QL05p056751 Quercus lobata HOM05D003801 ORTHO05D004812 4.8e-16 91.3 309 25.6
PSO339G3141 Papaver somniferum HOM05D003801 ORTHO05D004812 1.6e-14 86.3 232 28.0
Sabra19G0124600 Salix brachista HOM05D003801 ORTHO05D004812 2.9e-13 82.0 185 32.4
arahy.Tifrunner.gnm1.ann1.WCY7KD Arachis hypogaea HOM05D003801 ORTHO05D004812 6.5e-13 80.9 164 30.5
AL1G16970 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 2.1e-11 75.9 77 45.5
AL1G17100 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 2.1e-11 75.9 77 45.5
CDE07G0033 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 2.1e-11 75.9 63 55.6
SHI19239 Sapria himalayana HOM05D003801 ORTHO05D004812 1.2e-09 70.1 247 27.5
TAR624G1267 Trochodendron aralioides HOM05D004621 ORTHO05D005817 4.4e-09 68.2 105 34.3
CSS0035288 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 9.8e-09 67.0 123 28.5
Hma1.2p1_0613F.1_g189200 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 2.7e-06 58.9 285 20.4


User provided reference genes

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