Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre10.g447300 Chlamydomonas reinhardtii HOM05D004608 ORTHO05D006533 3.6e-221 771.5 473 100.0
Os02g0198600 Oryza sativa ssp. japonica HOM05D004608 ORTHO05D006533 8.7e-74 282.0 469 37.5
Cfa016939 Carpinus fangiana HOM05D004608 ORTHO05D006533 1.9e-73 280.8 469 36.9
Eucgr.F03661 Eucalyptus grandis HOM05D004608 ORTHO05D006533 3.3e-73 280.0 472 37.1
FvH4_3g42010 Fragaria vesca HOM05D004608 ORTHO05D006533 5.6e-73 279.3 469 37.7
HanXRQChr11g0334621 Helianthus annuus HOM05D004608 ORTHO05D006533 1.3e-72 278.1 469 37.5
HanXRQChr05g0160221 Helianthus annuus HOM05D004608 ORTHO05D006533 1.6e-72 277.7 471 36.5
HPP92_021912 Vanilla planifolia HOM05D004608 ORTHO05D006533 1.6e-72 277.7 469 37.5
Potri.001G469300 Populus trichocarpa HOM05D004608 ORTHO05D006533 3.7e-72 276.6 469 37.1
SGA_v2.0_scaffold168G38588 Striga asiatica HOM05D004608 ORTHO05D006533 3.7e-72 276.6 469 37.1
Ca_14850_v3 Cicer arietinum L. HOM05D004608 ORTHO05D006533 4.8e-72 276.2 470 37.4
QL08p001615 Quercus lobata HOM05D004608 ORTHO05D006533 4.8e-72 276.2 469 36.2
Zm00001eb205890 Zea mays HOM05D004608 ORTHO05D006533 4.8e-72 276.2 344 45.6
AagrBONN_evm.TU.Sc2ySwM_117.3155 Anthoceros agrestis HOM05D004608 ORTHO05D006533 6.2e-72 275.8 470 38.5
CANSAT11G0422 Cannabis sativa HOM05D004608 ORTHO05D006533 6.2e-72 275.8 469 37.1
Glyma.18G072500 Glycine max HOM05D004608 ORTHO05D006533 1.4e-71 274.6 469 37.3
Lsat_1_v5_gn_7_116460 Lactuca sativa HOM05D004608 ORTHO05D006533 1.8e-71 274.2 469 36.5
Potri.011G166100 Populus trichocarpa HOM05D004608 ORTHO05D006533 1.8e-71 274.2 469 36.9
Rhsim06G0233900 Rhododendron simsii HOM05D004608 ORTHO05D006533 1.8e-71 274.2 469 36.0
Thhalv10020839m.g Eutrema salsugineum HOM05D004608 ORTHO05D006533 2.4e-71 273.9 469 36.5
TWI38G2408 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 3.1e-71 273.5 473 37.0
EL10Ac4g07509 Beta vulgaris HOM05D004608 ORTHO05D006533 4.0e-71 273.1 471 36.7
CiPaw.12G141700 Carya illinoinensis HOM05D004608 ORTHO05D006533 4.0e-71 273.1 469 36.5
FAN16G3187 Fragaria x ananassa HOM05D004608 ORTHO05D006533 4.0e-71 273.1 480 36.7
PGR031G2516 Punica granatum HOM05D004608 ORTHO05D006533 5.3e-71 272.7 471 36.7
TWI38G1265 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 5.3e-71 272.7 473 36.6
Atru.chr2.3848 Acer truncatum HOM05D004608 ORTHO05D006533 9.0e-71 271.9 470 36.2
Ciclev10008478m.g Citrus clementina HOM05D004608 ORTHO05D006533 9.0e-71 271.9 470 35.5
FAN25G0703 Fragaria x ananassa HOM05D004608 ORTHO05D006533 9.0e-71 271.9 480 36.7
Sabra16G0318300 Salix brachista HOM05D004608 ORTHO05D006533 9.0e-71 271.9 477 36.7
Dinv40894 Davidia involucrata HOM05D004608 ORTHO05D006533 1.2e-70 271.6 360 42.5
Lj1C897G12 Lonicera japonica HOM05D004608 ORTHO05D006533 1.2e-70 271.6 473 36.4
TPR.G17932 Trifolium pratense HOM05D004608 ORTHO05D006533 1.2e-70 271.6 471 36.7
vmacro11628 Vaccinium macrocarpon HOM05D004608 ORTHO05D006533 1.2e-70 271.6 469 36.2
Aqoxy4G02317 Aquilegia oxysepala HOM05D004608 ORTHO05D006533 1.5e-70 271.2 474 35.7
Haze_09894 Corylus avellana HOM05D004608 ORTHO05D006533 1.5e-70 271.2 360 42.2
Sed0006020 Sechium edule HOM05D004608 ORTHO05D006533 1.5e-70 271.2 469 36.9
AL3G25090 Arabidopsis lyrata HOM05D004608 ORTHO05D006533 2.0e-70 270.8 469 35.6
ECA236G2785 Erigeron canadensis HOM05D004608 ORTHO05D006533 2.0e-70 270.8 469 35.8
MSTRG.7029 Avicennia marina HOM05D004608 ORTHO05D006533 2.6e-70 270.4 469 36.2
RcHm_v2.0_Chr5g0075221 Rosa chinensis HOM05D004608 ORTHO05D006533 2.6e-70 270.4 469 36.2
Glyma.08G337500 Glycine max HOM05D004608 ORTHO05D006533 3.4e-70 270.0 469 37.1
Sp3g11470 Schrenkiella parvula HOM05D004608 ORTHO05D006533 4.5e-70 269.6 470 36.6
MD03G1039600 Malus domestica HOM05D004608 ORTHO05D006533 5.8e-70 269.2 470 36.2
Actinidia30368 Actinidia chinensis HOM05D004608 ORTHO05D006533 7.6e-70 268.9 472 36.2
Pp3c4_20890 Physcomitrium patens HOM05D004608 ORTHO05D006533 7.6e-70 268.9 475 35.4
VMungo0540G0162 Vigna mungo HOM05D004608 ORTHO05D006533 7.6e-70 268.9 469 36.7
AT3G13235 Arabidopsis thaliana HOM05D004608 ORTHO05D006533 1.0e-69 268.5 469 35.4
Hund22995 Selenicereus undatus HOM05D004608 ORTHO05D006533 1.0e-69 268.5 469 36.9
THA.LOC104815684 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 1.0e-69 268.5 478 35.1
ClCG09G021670 Citrullus lanatus HOM05D004608 ORTHO05D006533 1.3e-69 268.1 469 36.9
Gohir.D13G133200 Gossypium hirsutum HOM05D004608 ORTHO05D006533 1.3e-69 268.1 471 35.5
Manes.05G206400 Manihot esculenta HOM05D004608 ORTHO05D006533 1.3e-69 268.1 361 41.8
CsaV3_7G021370 Cucumis sativus L. HOM05D004608 ORTHO05D006533 2.2e-69 267.3 469 36.9
MD11G1040100 Malus domestica HOM05D004608 ORTHO05D006533 2.2e-69 267.3 469 35.2
Prupe.6G031700 Prunus persica HOM05D004608 ORTHO05D006533 2.2e-69 267.3 469 35.8
Gohir.A13G130142 Gossypium hirsutum HOM05D004608 ORTHO05D006533 2.9e-69 266.9 474 35.2
CSS0047803 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 3.8e-69 266.5 471 36.3
Migut.M01599 Erythranthe guttata HOM05D004608 ORTHO05D006533 3.8e-69 266.5 469 36.2
MBI14_g00953_MAGBIO Magnolia biondii HOM05D004608 ORTHO05D006533 3.8e-69 266.5 471 36.9
GSVIVG01014786001 Vitis vinifera HOM05D004608 ORTHO05D006533 3.8e-69 266.5 469 36.0
CARHR087890 Cardamine hirsuta HOM05D004608 ORTHO05D006533 4.9e-69 266.2 476 35.9
COL.COLO4_07760 Corchorus olitorius HOM05D004608 ORTHO05D006533 4.9e-69 266.2 469 35.0
Phvul.006G060300 Phaseolus vulgaris HOM05D004608 ORTHO05D006533 4.9e-69 266.2 469 36.2
FAN21G2140 Fragaria x ananassa HOM05D004608 ORTHO05D006533 8.4e-69 265.4 500 35.6
THA.LOC104801910 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 1.4e-68 264.6 360 42.2
THA.LOC104810298 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 1.4e-68 264.6 360 42.2
Cpa.g.sc12.91 Carica papaya HOM05D004608 ORTHO05D006533 1.9e-68 264.2 473 34.9
Sed0022757 Sechium edule HOM05D004608 ORTHO05D006533 1.9e-68 264.2 469 36.2
Lj6g0013957 Lotus japonicus HOM05D004608 ORTHO05D006533 3.2e-68 263.5 469 37.1
AUR62017165 Chenopodium quinoa HOM05D004608 ORTHO05D006533 4.2e-68 263.1 465 36.3
Duzib213G0525 Durio zibethinus HOM05D004608 ORTHO05D006533 4.2e-68 263.1 469 35.2
FAN11G3108 Fragaria x ananassa HOM05D004608 ORTHO05D006533 4.2e-68 263.1 500 35.6
Nn1g07694 Nelumbo nucifera HOM05D004608 ORTHO05D006533 4.2e-68 263.1 361 41.8
Oeu026626.2 Olea europaea HOM05D004608 ORTHO05D006533 9.3e-68 261.9 469 35.2
CAN.G492.45 Capsicum annuum HOM05D004608 ORTHO05D006533 1.6e-67 261.2 475 35.4
AUR62035639 Chenopodium quinoa HOM05D004608 ORTHO05D006533 1.6e-67 261.2 459 36.4
Cc05_g15480 Coffea canephora HOM05D004608 ORTHO05D006533 1.6e-67 261.2 469 35.2
Mapoly0030s0110 Marchantia polymorpha HOM05D004608 ORTHO05D006533 1.6e-67 261.2 347 42.9
CSS0013715 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 2.1e-67 260.8 351 42.5
Gorai.013G149500 Gossypium raimondii HOM05D004608 ORTHO05D006533 2.1e-67 260.8 479 34.9
Psat5g164640 Pisum sativum HOM05D004608 ORTHO05D006533 2.1e-67 260.8 360 43.3
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 2.7e-67 260.4 471 35.2
Lalb_Chr15g0082461 Lupinus albus HOM05D004608 ORTHO05D006533 2.7e-67 260.4 469 36.7
PSO541G2325 Papaver somniferum HOM05D004608 ORTHO05D006533 2.7e-67 260.4 470 36.0
Thecc.07G005400 Theobroma cacao HOM05D004608 ORTHO05D006533 2.7e-67 260.4 469 35.2
Solyc10g005890.3 Solanum lycopersicum HOM05D004608 ORTHO05D006533 4.6e-67 259.6 473 35.9
DCAR_017596 Daucus carota HOM05D004608 ORTHO05D006533 6.0e-67 259.2 460 36.3
Sopen10g001840 Solanum pennellii HOM05D004608 ORTHO05D006533 6.0e-67 259.2 473 35.7
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 1.0e-66 258.5 471 35.7
Gorai.009G453300 Gossypium raimondii HOM05D004608 ORTHO05D006533 1.0e-66 258.5 470 35.7
arahy.Tifrunner.gnm1.ann1.R4UTE8 Arachis hypogaea HOM05D004608 ORTHO05D006533 1.3e-66 258.1 469 36.0
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 1.3e-66 258.1 471 35.7
C03p46240 Brassica napus HOM05D004608 ORTHO05D006533 1.3e-66 258.1 475 35.8
BolC3t16895H Brassica oleracea HOM05D004608 ORTHO05D006533 1.3e-66 258.1 477 35.8
Carub.0003s1265 Capsella rubella HOM05D004608 ORTHO05D006533 2.3e-66 257.3 469 35.4
Gohir.D05G386600 Gossypium hirsutum HOM05D004608 ORTHO05D006533 2.3e-66 257.3 470 35.5
TAR626G0684 Trochodendron aralioides HOM05D004608 ORTHO05D006533 3.9e-66 256.5 339 43.4
arahy.Tifrunner.gnm1.ann1.EI2AUC Arachis hypogaea HOM05D004608 ORTHO05D006533 5.1e-66 256.1 469 36.2
MELO3C013214.2 Cucumis melo HOM05D004608 ORTHO05D006533 6.7e-66 255.8 469 36.2
Gohir.A04G003100 Gossypium hirsutum HOM05D004608 ORTHO05D006533 1.9e-65 254.2 476 35.5
PGSC0003DMG400014406 Solanum tuberosum HOM05D004608 ORTHO05D006533 2.5e-65 253.8 464 35.6
Aa31LG8G500 Aethionema arabicum HOM05D004608 ORTHO05D006533 3.3e-65 253.4 474 34.8
ATR0587G001 Amborella trichopoda HOM05D004608 ORTHO05D006533 5.7e-65 252.7 444 36.0
MCO11G772 Micromonas commoda HOM05D004608 ORTHO05D006533 2.2e-64 250.8 470 36.6
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 2.4e-63 247.3 472 35.2
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 6.9e-63 245.7 471 35.5
Sabra11G0139800 Salix brachista HOM05D004608 ORTHO05D006533 2.6e-62 243.8 506 33.6
Nitab4.5_0007214g0010 Nicotiana tabacum HOM05D004608 ORTHO05D006533 3.2e-60 236.9 474 34.0
Peaxi162Scf00219g00158 Petunia axillaris HOM05D004608 ORTHO05D006533 1.6e-59 234.6 474 33.8
Hma1.2p1_0193F.1_g084100 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 3.9e-58 229.9 351 40.7
Hma1.2p1_2995F.1_g331425 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 3.9e-58 229.9 351 40.7
TAR624G0837 Trochodendron aralioides HOM05D004608 ORTHO05D006533 1.7e-56 224.6 475 33.3
CBR_g36902 Chara braunii HOM05D004608 ORTHO05D006533 2.8e-56 223.8 332 43.7
PRCOL_00000426 Prasinoderma coloniale HOM05D004608 ORTHO05D006533 2.8e-56 223.8 474 33.5
Duzib268G0270 Durio zibethinus HOM05D004608 ORTHO05D006533 3.8e-53 213.4 343 37.9
Nitab4.5_0001622g0040 Nicotiana tabacum HOM05D004608 ORTHO05D006533 2.1e-51 207.6 362 37.0
BolC1t05127H Brassica oleracea HOM05D004608 ORTHO05D006533 7.9e-51 205.7 327 38.2
Sc03g0011700 Simmondsia chinensis HOM05D004608 ORTHO05D006533 3.0e-50 203.8 287 41.8
Cfa022177 Carpinus fangiana HOM05D004608 ORTHO05D006533 2.6e-46 190.7 361 35.5
Oeu019694.2 Olea europaea HOM05D004608 ORTHO05D006533 2.9e-45 187.2 299 37.8
Oeu019695.1 Olea europaea HOM05D004608 ORTHO05D006533 3.3e-41 173.7 467 27.8
Ah.06g180960 Amaranthus hybridus HOM05D004608 ORTHO05D006533 9.7e-41 172.2 361 33.5
unitig_899.g15266 Utricularia gibba HOM05D004608 ORTHO05D006533 2.8e-40 170.6 348 35.1
Actinidia10581 Actinidia chinensis HOM05D004608 ORTHO05D006533 4.5e-38 163.3 360 31.7
CDE05G0237 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 1.3e-32 145.2 198 46.0
unitig_699.g19599 Utricularia gibba HOM05D004608 ORTHO05D006533 7.2e-28 129.4 151 43.7
CDE05G1663 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 4.7e-27 126.7 131 48.9
Pp3c17_4800 Physcomitrium patens HOM05D004608 ORTHO05D006533 2.8e-24 117.5 494 24.9
QL09p009005 Quercus lobata HOM05D000176 ORTHO05D000106 6.3e-24 116.3 125 49.6
Aa31LG10G470 Aethionema arabicum HOM05D004608 ORTHO05D006533 1.2e-22 112.1 234 32.9
CSS0026438 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 7.2e-20 102.8 112 48.2
CSS0036658 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 3.6e-19 100.5 94 52.1
Aa31LG10G450 Aethionema arabicum HOM05D004608 ORTHO05D006533 8.0e-19 99.4 325 26.5
AL5G25300 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 6.3e-16 89.7 103 43.7
MD12G1084200 Malus domestica HOM05D004608 ORTHO05D249232 6.6e-13 79.7 65 61.5
QL05p082689 Quercus lobata HOM05D004608 ORTHO05D006533 6.8e-10 69.7 89 42.7
Ah.06g180950 Amaranthus hybridus HOM05D004608 ORTHO05D006533 1.3e-08 65.5 142 31.0
AL3G34310 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 2.2e-08 64.7 132 31.8
CSS0047513 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 7.0e-07 59.7 100 37.0
A05p36340 Brassica napus HOM05D004608 ORTHO05D006533 6.0e-06 56.6 65 41.5
AUR62020809 Chenopodium quinoa HOM05D004608 ORTHO05D006533 6.0e-06 56.6 134 30.6


User provided reference genes

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