Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre10.g446550 Chlamydomonas reinhardtii HOM05D003908 ORTHO05D004488 1.7e-61 239.2 122 100.0
Atru.chr2.813 Acer truncatum HOM05D003908 ORTHO05D004488 8.1e-40 167.2 115 67.0
Atru.chr4.2009 Acer truncatum HOM05D003908 ORTHO05D004488 1.1e-39 166.8 115 67.0
ECA240G0363 Erigeron canadensis HOM05D003908 ORTHO05D004488 4.0e-39 164.9 115 64.3
Lsat_1_v5_gn_6_91060 Lactuca sativa HOM05D003908 ORTHO05D004488 1.2e-38 163.3 115 65.2
Migut.D00367 Erythranthe guttata HOM05D003908 ORTHO05D004488 1.5e-38 162.9 114 64.9
Lj1g0011223 Lotus japonicus HOM05D003908 ORTHO05D004488 2.0e-38 162.5 115 64.3
SalBow3G3620 Salvia bowleyana HOM05D003908 ORTHO05D004488 2.0e-38 162.5 114 64.9
Pp3c25_8080 Physcomitrium patens HOM05D003908 ORTHO05D004488 2.6e-38 162.2 117 63.2
Sabra05G0166800 Salix brachista HOM05D003908 ORTHO05D004488 2.6e-38 162.2 115 64.3
Oeu018177.1 Olea europaea HOM05D003908 ORTHO05D004488 3.4e-38 161.8 114 64.9
Solyc02g068450.3 Solanum lycopersicum HOM05D003908 ORTHO05D004488 3.4e-38 161.8 115 66.1
Sopen02g017590 Solanum pennellii HOM05D003908 ORTHO05D004488 3.4e-38 161.8 115 66.1
PGSC0003DMG400009421 Solanum tuberosum HOM05D003908 ORTHO05D004488 3.4e-38 161.8 115 66.1
TPR.G34752 Trifolium pratense HOM05D003908 ORTHO05D004488 3.4e-38 161.8 115 65.2
CSS0040042 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 4.4e-38 161.4 115 63.5
SMO367G0680 Selaginella moellendorffii HOM05D003908 ORTHO05D004488 4.4e-38 161.4 117 65.0
Actinidia24932 Actinidia chinensis HOM05D005044 ORTHO05D006799 5.8e-38 161.0 114 64.9
Hma1.2p1_0172F.1_g076150 Hydrangea macrophylla HOM05D003908 ORTHO05D004488 5.8e-38 161.0 114 63.2
Os02g0824700 Oryza sativa ssp. japonica HOM05D003908 ORTHO05D004488 5.8e-38 161.0 113 64.6
Os04g0137500 Oryza sativa ssp. japonica HOM05D003908 ORTHO05D004488 5.8e-38 161.0 113 64.6
Pp3c6_17470 Physcomitrium patens HOM05D003908 ORTHO05D004488 5.8e-38 161.0 117 61.5
SGA_v2.0_scaffold138G35289 Striga asiatica HOM05D003696 ORTHO05D005158 5.8e-38 161.0 114 66.7
unitig_22.g5278 Utricularia gibba HOM05D003908 ORTHO05D004488 5.8e-38 161.0 114 65.8
Ah.02g111400 Amaranthus hybridus HOM05D003908 ORTHO05D004488 7.6e-38 160.6 114 63.2
Lj4g0023890 Lotus japonicus HOM05D003908 ORTHO05D004488 7.6e-38 160.6 114 63.2
Thecc.01G268300 Theobroma cacao HOM05D003908 ORTHO05D004488 7.6e-38 160.6 115 64.3
Aqoxy6G02470 Aquilegia oxysepala HOM05D003908 ORTHO05D004488 9.9e-38 160.2 115 64.3
CAN.G1299.5 Capsicum annuum HOM05D003908 ORTHO05D004488 9.9e-38 160.2 115 64.3
Potri.005G217600 Populus trichocarpa HOM05D003908 ORTHO05D004488 9.9e-38 160.2 115 63.5
THA.LOC104801254 Tarenaya hassleriana HOM05D003908 ORTHO05D004488 9.9e-38 160.2 115 63.5
Actinidia19977 Actinidia chinensis HOM05D003908 ORTHO05D004488 1.3e-37 159.8 114 64.0
Actinidia27523 Actinidia chinensis HOM05D003908 ORTHO05D004488 1.3e-37 159.8 114 64.0
CSS0036720 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.3e-37 159.8 115 62.6
CSS0040700 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.3e-37 159.8 115 62.6
FvH4_6g02960 Fragaria vesca HOM05D003908 ORTHO05D004488 1.3e-37 159.8 113 63.7
Hma1.2p1_0760F.1_g214230 Hydrangea macrophylla HOM05D003908 ORTHO05D004488 1.3e-37 159.8 114 62.3
Psat7g086640 Pisum sativum HOM05D003908 ORTHO05D004488 1.3e-37 159.8 114 63.2
Rhsim01G0270200 Rhododendron simsii HOM05D003908 ORTHO05D004488 1.3e-37 159.8 114 64.0
SGA_v2.0_scaffold580G53041 Striga asiatica HOM05D006471 ORTHO05D004488 1.3e-37 159.8 114 65.8
HPP92_001854 Vanilla planifolia HOM05D003908 ORTHO05D004488 1.3e-37 159.8 114 63.2
GSVIVG01031574001 Vitis vinifera HOM05D003908 ORTHO05D004488 1.3e-37 159.8 115 64.3
Dinv34562 Davidia involucrata HOM05D003908 ORTHO05D004488 1.7e-37 159.5 114 62.3
Nitab4.5_0000360g0160 Nicotiana tabacum HOM05D003908 ORTHO05D004488 1.7e-37 159.5 115 64.3
Nitab4.5_0002776g0060 Nicotiana tabacum HOM05D003908 ORTHO05D004488 1.7e-37 159.5 115 64.3
Peaxi162Scf00199g00925 Petunia axillaris HOM05D003908 ORTHO05D004488 1.7e-37 159.5 115 64.3
Zm00001eb111070 Zea mays HOM05D003908 ORTHO05D004488 1.7e-37 159.5 113 62.8
Zm00001eb330190 Zea mays HOM05D003908 ORTHO05D004488 1.7e-37 159.5 115 61.7
CiPaw.08G123800 Carya illinoinensis HOM05D003908 ORTHO05D004488 2.2e-37 159.1 115 62.6
Duzib138G1305 Durio zibethinus HOM05D003908 ORTHO05D004488 2.2e-37 159.1 115 63.5
FAN05G0658 Fragaria x ananassa HOM05D003908 ORTHO05D004488 2.2e-37 159.1 113 63.7
FAN09G2689 Fragaria x ananassa HOM05D003908 ORTHO05D004488 2.2e-37 159.1 113 63.7
Rhsim01G0201300 Rhododendron simsii HOM05D003908 ORTHO05D004488 2.2e-37 159.1 114 63.2
RcHm_v2.0_Chr3g0451151 Rosa chinensis HOM05D003908 ORTHO05D004488 2.2e-37 159.1 113 63.7
TAR633G1149 Trochodendron aralioides HOM05D003908 ORTHO05D004488 2.2e-37 159.1 115 62.6
Aqoxy5G00367 Aquilegia oxysepala HOM05D003908 ORTHO05D004488 2.9e-37 158.7 115 63.5
Nn3g19495 Nelumbo nucifera HOM05D003908 ORTHO05D004488 2.9e-37 158.7 115 62.6
Nitab4.5_0000443g0180 Nicotiana tabacum HOM05D003908 ORTHO05D004488 2.9e-37 158.7 115 62.6
THA.LOC104825983 Tarenaya hassleriana HOM05D003908 ORTHO05D004488 2.9e-37 158.7 115 62.6
arahy.Tifrunner.gnm1.ann1.95Q6AF Arachis hypogaea HOM05D003908 ORTHO05D004488 3.7e-37 158.3 115 62.6
CSS0027656 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 3.7e-37 158.3 115 61.7
Duzib106G0327 Durio zibethinus HOM05D003908 ORTHO05D004488 3.7e-37 158.3 115 62.6
Glyma.05G135300 Glycine max HOM05D003908 ORTHO05D004488 3.7e-37 158.3 114 61.4
Glyma.08G090500 Glycine max HOM05D003908 ORTHO05D004488 3.7e-37 158.3 114 61.4
TWI12G1100 Tripterygium wilfordii HOM05D003908 ORTHO05D004488 3.7e-37 158.3 115 65.2
BcaB01g02026 Brassica carinata HOM05D003908 ORTHO05D004488 4.9e-37 157.9 115 62.6
BcaB01g02477 Brassica carinata HOM05D003908 ORTHO05D004488 4.9e-37 157.9 115 62.6
BcaC04g24002 Brassica carinata HOM05D003908 ORTHO05D004488 4.9e-37 157.9 115 62.6
A03p30970 Brassica napus HOM05D003908 ORTHO05D004488 4.9e-37 157.9 115 62.6
A09p02050 Brassica napus HOM05D003908 ORTHO05D004488 4.9e-37 157.9 115 62.6
C09p02140 Brassica napus HOM05D003908 ORTHO05D004488 4.9e-37 157.9 115 62.6
BolC9t53144H Brassica oleracea HOM05D003908 ORTHO05D004488 4.9e-37 157.9 115 62.6
COL.COLO4_15346 Corchorus olitorius HOM05D003908 ORTHO05D004488 4.9e-37 157.9 115 63.5
FAN14G5491 Fragaria x ananassa HOM05D003908 ORTHO05D004488 4.9e-37 157.9 113 62.8
MBI07_g21062_MAGBIO Magnolia biondii HOM05D003908 ORTHO05D004488 4.9e-37 157.9 115 61.7
AL6G50430 Arabidopsis lyrata HOM05D003908 ORTHO05D004488 6.4e-37 157.5 115 61.7
AT4G02620 Arabidopsis thaliana HOM05D003908 ORTHO05D004488 6.4e-37 157.5 115 61.7
arahy.Tifrunner.gnm1.ann1.Y10HXA Arachis hypogaea HOM05D003908 ORTHO05D004488 6.4e-37 157.5 115 61.7
Carub.0006s3452 Capsella rubella HOM05D003908 ORTHO05D004488 6.4e-37 157.5 115 61.7
CARHR250910 Cardamine hirsuta HOM05D003908 ORTHO05D004488 6.4e-37 157.5 115 60.9
Manes.07G050600 Manihot esculenta HOM05D003908 ORTHO05D004488 6.4e-37 157.5 115 62.6
Mapoly0079s0004 Marchantia polymorpha HOM05D003908 ORTHO05D004488 6.4e-37 157.5 116 62.1
Phvul.002G186900 Phaseolus vulgaris HOM05D003908 ORTHO05D004488 6.4e-37 157.5 114 61.4
Aa31LG5G2250 Aethionema arabicum HOM05D003908 ORTHO05D004488 8.3e-37 157.1 115 61.7
arahy.Tifrunner.gnm1.ann1.LT9XWZ Arachis hypogaea HOM05D003908 ORTHO05D004488 8.3e-37 157.1 115 60.9
MSTRG.21514 Avicennia marina HOM05D003908 ORTHO05D004488 8.3e-37 157.1 114 62.3
EL10Ac5g10467 Beta vulgaris HOM05D003908 ORTHO05D004488 8.3e-37 157.1 115 61.7
Cpa.g.sc117.89 Carica papaya HOM05D003908 ORTHO05D004488 8.3e-37 157.1 115 61.7
PSO210G0243 Papaver somniferum HOM05D003908 ORTHO05D004488 8.3e-37 157.1 111 64.0
PSO832G4196 Papaver somniferum HOM05D003908 ORTHO05D004488 8.3e-37 157.1 111 64.0
Sed0024016 Sechium edule HOM05D003908 ORTHO05D004488 8.3e-37 157.1 115 61.7
VMungo0251G3698 Vigna mungo HOM05D003908 ORTHO05D004488 8.3e-37 157.1 114 60.5
BcaC01g06745 Brassica carinata HOM05D003908 ORTHO05D004488 1.1e-36 156.8 115 61.7
C03p37740 Brassica napus HOM05D003908 ORTHO05D004488 1.1e-36 156.8 115 61.7
BolC3t16064H Brassica oleracea HOM05D003908 ORTHO05D004488 1.1e-36 156.8 115 61.7
Ciclev10002833m.g Citrus clementina HOM05D003908 ORTHO05D004488 1.1e-36 156.8 115 62.6
Lalb_Chr12g0209211 Lupinus albus HOM05D003908 ORTHO05D004488 1.1e-36 156.8 115 61.7
Sp6g02530 Schrenkiella parvula HOM05D003908 ORTHO05D004488 1.1e-36 156.8 106 66.0
Cfa006421 Carpinus fangiana HOM05D003908 ORTHO05D004488 1.4e-36 156.4 115 60.9
MELO3C015218.2 Cucumis melo HOM05D003908 ORTHO05D004488 1.4e-36 156.4 115 61.7
CsaV3_1G042520 Cucumis sativus L. HOM05D003908 ORTHO05D004488 1.4e-36 156.4 115 61.7
Thhalv10029066m.g Eutrema salsugineum HOM05D003908 ORTHO05D004488 1.4e-36 156.4 106 66.0
MBI10_g16831_MAGBIO Magnolia biondii HOM05D003908 ORTHO05D004488 1.4e-36 156.4 115 62.6
Thecc.05G283700 Theobroma cacao HOM05D003908 ORTHO05D004488 1.4e-36 156.4 115 61.7
CANSAT21G0496 Cannabis sativa HOM05D003908 ORTHO05D004488 1.9e-36 156.0 115 62.6
Gorai.013G079800 Gossypium raimondii HOM05D003908 ORTHO05D004488 1.9e-36 156.0 115 62.6
Cc09_g07930 Coffea canephora HOM05D003908 ORTHO05D004488 2.4e-36 155.6 115 61.7
Gohir.D08G206400 Gossypium hirsutum HOM05D003908 ORTHO05D004488 2.4e-36 155.6 114 61.4
Gorai.004G218600 Gossypium raimondii HOM05D003908 ORTHO05D004488 2.4e-36 155.6 114 61.4
QL03p025800 Quercus lobata HOM05D003908 ORTHO05D004488 2.4e-36 155.6 115 61.7
Sc17g0001030 Simmondsia chinensis HOM05D003908 ORTHO05D004488 2.4e-36 155.6 114 60.5
CBR_g38932 Chara braunii HOM05D003908 ORTHO05D004488 3.2e-36 155.2 116 63.8
ClCG03G017370 Citrullus lanatus HOM05D003908 ORTHO05D004488 3.2e-36 155.2 114 61.4
Gohir.A13G052900 Gossypium hirsutum HOM05D003908 ORTHO05D004488 3.2e-36 155.2 115 61.7
Prupe.5G006500 Prunus persica HOM05D003908 ORTHO05D004488 4.1e-36 154.8 115 60.9
TWI18G0751 Tripterygium wilfordii HOM05D003908 ORTHO05D004488 4.1e-36 154.8 115 61.7
Eucgr.C04384 Eucalyptus grandis HOM05D003908 ORTHO05D004488 5.4e-36 154.5 106 65.1
Gohir.A08G188000 Gossypium hirsutum HOM05D003908 ORTHO05D004488 5.4e-36 154.5 114 61.4
Gohir.D13G069500 Gossypium hirsutum HOM05D003908 ORTHO05D004488 5.4e-36 154.5 115 61.7
HanXRQChr03g0088561 Helianthus annuus HOM05D003908 ORTHO05D004488 5.4e-36 154.5 103 67.0
Sed0027410 Sechium edule HOM05D003908 ORTHO05D004488 5.4e-36 154.5 115 60.9
CDE09G0316 Ceratophyllum demersum HOM05D003908 ORTHO05D004488 7.1e-36 154.1 115 61.7
Ca_18213_v3 Cicer arietinum L. HOM05D003908 ORTHO05D004488 7.1e-36 154.1 113 61.9
Eucgr.B02621 Eucalyptus grandis HOM05D003908 ORTHO05D004488 7.1e-36 154.1 113 61.1
Gohir.A08G215400 Gossypium hirsutum HOM05D003908 ORTHO05D004488 7.1e-36 154.1 115 60.0
Gorai.004G246600 Gossypium raimondii HOM05D003908 ORTHO05D004488 7.1e-36 154.1 115 60.0
HPP92_018775 Vanilla planifolia HOM05D003908 ORTHO05D004488 7.1e-36 154.1 114 59.6
MD04G1224300 Malus domestica HOM05D003908 ORTHO05D004488 9.2e-36 153.7 103 67.0
Prupe.6G005500 Prunus persica HOM05D003908 ORTHO05D004488 1.2e-35 153.3 115 60.0
MD12G1241000 Malus domestica HOM05D003908 ORTHO05D004488 1.6e-35 152.9 103 67.0
Hund02874 Selenicereus undatus HOM05D003908 ORTHO05D004488 1.6e-35 152.9 114 59.6
ATR0787G044 Amborella trichopoda HOM05D003908 ORTHO05D004488 2.1e-35 152.5 106 66.0
BraA09t35854Z Brassica rapa HOM05D003908 ORTHO05D004488 2.1e-35 152.5 118 61.0
PSO384G1262 Papaver somniferum HOM05D003908 ORTHO05D004488 2.1e-35 152.5 111 62.2
PSO135G0069 Papaver somniferum HOM05D003908 ORTHO05D004488 3.5e-35 151.8 112 60.7
PGR031G1854 Punica granatum HOM05D003908 ORTHO05D004488 3.5e-35 151.8 115 60.9
BraA03t12274Z Brassica rapa HOM05D003908 ORTHO05D004488 6.0e-35 151.0 122 59.0
Gohir.D08G232100 Gossypium hirsutum HOM05D003908 ORTHO05D004488 1.7e-34 149.4 115 59.1
Ciclev10022651m.g Citrus clementina HOM05D003908 ORTHO05D004488 2.3e-34 149.1 98 69.4
Dinv04731 Davidia involucrata HOM05D003908 ORTHO05D004488 2.3e-34 149.1 103 65.0
PRCOL_00000544 Prasinoderma coloniale HOM05D003908 ORTHO05D004488 6.6e-34 147.5 106 64.2
C02p39240 Brassica napus HOM05D003908 ORTHO05D004488 1.5e-33 146.4 128 55.5
Nitab4.5_0002305g0050 Nicotiana tabacum HOM05D003908 ORTHO05D004488 1.5e-33 146.4 99 67.7
CDE11G1041 Ceratophyllum demersum HOM05D005443 ORTHO05D004488 2.5e-33 145.6 100 65.0
Duzib133G0635 Durio zibethinus HOM05D003908 ORTHO05D004488 3.3e-33 145.2 103 65.0
BolC2t09935H Brassica oleracea HOM05D003908 ORTHO05D004488 4.3e-33 144.8 128 54.7
CSS0024256 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 4.3e-33 144.8 106 62.3
CSS0029390 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 4.3e-33 144.8 106 62.3
CSS0046821 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 4.3e-33 144.8 99 65.7
arahy.Tifrunner.gnm1.ann1.XQ21SD Arachis hypogaea HOM05D003908 ORTHO05D004488 5.6e-33 144.4 98 66.3
CSS0045088 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 7.3e-33 144.1 115 58.3
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 9.6e-33 143.7 104 66.3
CSS0044738 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.6e-32 142.9 113 59.3
MCO03G460 Micromonas commoda HOM05D003908 ORTHO05D004488 1.6e-32 142.9 111 59.5
Haze_21722 Corylus avellana HOM05D003908 ORTHO05D004488 1.2e-30 136.7 115 59.1
Peaxi162Scf00198g01017 Petunia axillaris HOM05D003908 ORTHO05D004488 1.2e-30 136.7 110 60.0
CSS0043230 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 3.4e-30 135.2 99 61.6
vmacro14877 Vaccinium macrocarpon HOM05D003908 ORTHO05D004488 3.4e-30 135.2 92 65.2
BcaC03g16154 Brassica carinata HOM05D003908 ORTHO05D004488 2.7e-27 125.6 91 61.5
CSS0038153 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 7.8e-27 124.0 99 58.6
Actinidia04661 Actinidia chinensis HOM05D003908 ORTHO05D004488 9.6e-25 117.1 103 54.4
Actinidia21151 Actinidia chinensis HOM05D003908 ORTHO05D004488 9.6e-25 117.1 103 54.4
Haze_26154 Corylus avellana HOM05D003908 ORTHO05D004488 9.0e-23 110.5 109 46.8
COL.COLO4_30210 Corchorus olitorius HOM05D003908 ORTHO05D004488 8.4e-21 104.0 115 45.2
AagrBONN_evm.TU.Sc2ySwM_368.148 Anthoceros agrestis HOM05D003908 ORTHO05D004488 5.4e-20 101.3 77 61.0
Hund09564 Selenicereus undatus HOM05D003908 ORTHO05D004488 7.1e-20 100.9 114 43.9
Lalb_Chr20g0122801 Lupinus albus HOM05D003908 ORTHO05D004488 1.2e-19 100.1 72 63.9
Ah.11g050040 Amaranthus hybridus HOM05D005044 ORTHO05D006799 4.6e-19 98.2 72 58.3
Haze_04363 Corylus avellana HOM05D003908 ORTHO05D004488 4.6e-19 98.2 77 55.8
TAR362G1230 Trochodendron aralioides HOM05D003908 ORTHO05D004488 6.0e-19 97.8 89 48.3
COL.COLO4_06708 Corchorus olitorius HOM05D003908 ORTHO05D004488 2.3e-18 95.9 72 59.7
CiPaw.04G181400 Carya illinoinensis HOM05D003908 ORTHO05D004488 9.6e-17 90.5 81 51.9
SEGI_40634 Sequoiadendron giganteum HOM05D003908 ORTHO05D004488 2.1e-16 89.4 68 57.4
SHI24544 Sapria himalayana HOM05D003908 ORTHO05D000023 1.1e-15 87.0 64 68.8
Actinidia30711 Actinidia chinensis HOM05D005044 ORTHO05D006799 2.4e-15 85.9 64 62.5
Nitab4.5_0000138g0160 Nicotiana tabacum HOM05D003908 ORTHO05D004488 5.8e-14 81.3 62 61.3
BcaB05g23651 Brassica carinata HOM05D003908 ORTHO05D004488 6.4e-13 77.8 106 40.6
Sopen12g012850 Solanum pennellii HOM05D003908 ORTHO05D004488 1.2e-11 73.6 74 58.1
AUR62011951 Chenopodium quinoa HOM05D003908 ORTHO05D004488 1.1e-09 67.0 43 69.8
Nitab4.5_0008708g0010 Nicotiana tabacum HOM05D003908 ORTHO05D004488 1.5e-09 66.6 50 52.0
Lalb_Chr20g0122811 Lupinus albus HOM05D003908 ORTHO05D004488 4.8e-08 61.6 44 59.1
DCAR_012514 Daucus carota HOM05D003908 ORTHO05D004488 1.8e-07 59.7 39 61.5
DCAR_018445 Daucus carota HOM05D003908 ORTHO05D004488 1.8e-07 59.7 39 61.5


User provided reference genes

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