Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre10.g444800 Chlamydomonas reinhardtii HOM05D002872 ORTHO05D003204 2.6e-128 462.2 260 100.0
AagrBONN_evm.TU.Sc2ySwM_362.2790 Anthoceros agrestis HOM05D002872 ORTHO05D003204 2.9e-18 96.7 257 32.7
SEGI_35371 Sequoiadendron giganteum HOM05D002872 ORTHO05D003204 3.7e-18 96.3 195 34.4
Mapoly0004s0186 Marchantia polymorpha HOM05D002872 ORTHO05D003204 6.4e-18 95.5 207 32.4
Pp3c20_17010 Physcomitrium patens HOM05D002872 ORTHO05D003204 6.4e-18 95.5 229 32.8
Ciclev10016445m.g Citrus clementina HOM05D002872 ORTHO05D003204 6.0e-16 89.0 176 38.1
SMO230G0092 Selaginella moellendorffii HOM05D002872 ORTHO05D003204 2.3e-15 87.0 173 34.7
Atru.chr3.2058 Acer truncatum HOM05D002872 ORTHO05D003204 1.5e-14 84.3 176 36.4
Manes.03G086300 Manihot esculenta HOM05D002872 ORTHO05D003204 1.5e-14 84.3 175 37.7
Migut.N00530 Erythranthe guttata HOM05D002872 ORTHO05D003204 1.9e-14 84.0 176 38.1
Thecc.09G205700 Theobroma cacao HOM05D002872 ORTHO05D003204 4.3e-14 82.8 180 35.0
Aa31LG5G11760 Aethionema arabicum HOM05D002872 ORTHO05D003204 7.3e-14 82.0 176 35.2
CDE08G0031 Ceratophyllum demersum HOM05D002872 ORTHO05D003204 7.3e-14 82.0 173 37.6
PSO339G4532 Papaver somniferum HOM05D002872 ORTHO05D003204 7.3e-14 82.0 176 36.9
COL.COLO4_35069 Corchorus olitorius HOM05D002872 ORTHO05D003204 9.5e-14 81.6 180 33.9
ECA233G5319 Erigeron canadensis HOM05D000141 ORTHO05D004038 9.5e-14 81.6 164 37.2
Nn2g15900 Nelumbo nucifera HOM05D002872 ORTHO05D003204 9.5e-14 81.6 197 36.0
Medtr4g083250 Medicago truncatula HOM05D002872 ORTHO05D003204 1.2e-13 81.3 180 35.6
TPR.G34033 Trifolium pratense HOM05D002872 ORTHO05D003204 1.2e-13 81.3 237 32.1
THA.LOC104811711 Tarenaya hassleriana HOM05D002872 ORTHO05D003204 1.6e-13 80.9 176 36.9
Glyma.07G225100 Glycine max HOM05D002872 ORTHO05D003204 2.1e-13 80.5 175 36.0
PSO384G4623 Papaver somniferum HOM05D002872 ORTHO05D003204 2.8e-13 80.1 176 36.4
Pp3c23_11620 Physcomitrium patens HOM05D002872 ORTHO05D003204 3.6e-13 79.7 230 30.4
Psat7g134440 Pisum sativum HOM05D002872 ORTHO05D003204 3.6e-13 79.7 227 32.2
VMungo0251G2931 Vigna mungo HOM05D002872 ORTHO05D003204 3.6e-13 79.7 168 36.3
Aqoxy1G00089 Aquilegia oxysepala HOM05D002872 ORTHO05D003204 4.7e-13 79.3 169 36.1
Aqoxy386s003 Aquilegia oxysepala HOM05D002872 ORTHO05D003204 4.7e-13 79.3 169 36.1
Glyma.20G025000 Glycine max HOM05D002872 ORTHO05D003204 6.2e-13 79.0 229 32.8
Eucgr.J01745 Eucalyptus grandis HOM05D002872 ORTHO05D003204 8.0e-13 78.6 164 37.8
Hma1.2p1_0589F.1_g184710 Hydrangea macrophylla HOM05D002872 ORTHO05D003204 8.0e-13 78.6 164 36.6
MD11G1001100 Malus domestica HOM05D002872 ORTHO05D003204 8.0e-13 78.6 176 33.0
RcHm_v2.0_Chr5g0084061 Rosa chinensis HOM05D002872 ORTHO05D003204 8.0e-13 78.6 227 30.0
ClCG03G014660 Citrullus lanatus HOM05D002872 ORTHO05D003204 1.1e-12 78.2 201 31.3
Lj2A888G14 Lonicera japonica HOM05D002872 ORTHO05D003204 1.1e-12 78.2 176 36.9
Potri.001G001300 Populus trichocarpa HOM05D002872 ORTHO05D003204 1.1e-12 78.2 179 34.1
TWI34G0676 Tripterygium wilfordii HOM05D002872 ORTHO05D003204 1.1e-12 78.2 176 34.1
HPP92_014370 Vanilla planifolia HOM05D002872 ORTHO05D003204 1.1e-12 78.2 164 34.1
ATR0068G080 Amborella trichopoda HOM05D002872 ORTHO05D003204 1.4e-12 77.8 176 36.4
CsaV3_1G041510 Cucumis sativus L. HOM05D002872 ORTHO05D003204 1.8e-12 77.4 173 33.5
GSVIVG01025507001 Vitis vinifera HOM05D002872 ORTHO05D003204 2.3e-12 77.0 176 35.8
Lalb_Chr09g0328951 Lupinus albus HOM05D002872 ORTHO05D003204 3.1e-12 76.6 180 29.4
Gohir.A13G211000 Gossypium hirsutum HOM05D002872 ORTHO05D003204 4.0e-12 76.3 177 33.3
Lj4g0027888 Lotus japonicus HOM05D002872 ORTHO05D003204 4.0e-12 76.3 215 32.1
Actinidia00918 Actinidia chinensis HOM05D002872 ORTHO05D003204 5.2e-12 75.9 180 35.0
TAR623G1141 Trochodendron aralioides HOM05D002872 ORTHO05D003204 5.2e-12 75.9 197 35.0
Ca_18794_v3 Cicer arietinum L. HOM05D002872 ORTHO05D003204 1.2e-11 74.7 217 30.9
Phvul.002G101500 Phaseolus vulgaris HOM05D002872 ORTHO05D003204 1.2e-11 74.7 229 30.6
Sed0004485 Sechium edule HOM05D002872 ORTHO05D003204 1.2e-11 74.7 248 29.8
Potri.002G142900 Populus trichocarpa HOM05D002872 ORTHO05D003204 1.5e-11 74.3 168 31.0
Nitab4.5_0000890g0190 Nicotiana tabacum HOM05D002872 ORTHO05D003204 2.0e-11 73.9 157 36.3
Prupe.6G001300 Prunus persica HOM05D002872 ORTHO05D003204 2.0e-11 73.9 208 31.2
Gohir.A07G147400 Gossypium hirsutum HOM05D002872 ORTHO05D003204 2.6e-11 73.6 173 30.1
MD07G1087600 Malus domestica HOM05D002872 ORTHO05D003204 2.6e-11 73.6 258 27.5
Zm00001eb015470 Zea mays HOM05D002872 ORTHO05D003204 2.6e-11 73.6 173 31.8
Duzib168G2058 Durio zibethinus HOM05D002872 ORTHO05D003204 4.4e-11 72.8 188 33.0
Oeu018898.1 Olea europaea HOM05D002872 ORTHO05D003204 4.4e-11 72.8 180 34.4
Ciclev10021755m.g Citrus clementina HOM05D002872 ORTHO05D003204 5.8e-11 72.4 196 29.1
Gohir.D13G214900 Gossypium hirsutum HOM05D002872 ORTHO05D003204 5.8e-11 72.4 166 33.7
Gorai.013G245200 Gossypium raimondii HOM05D002872 ORTHO05D003204 5.8e-11 72.4 166 33.7
Lsat_1_v5_gn_6_56180 Lactuca sativa HOM05D002872 ORTHO05D003204 5.8e-11 72.4 173 32.4
Peaxi162Scf00186g01511 Petunia axillaris HOM05D002872 ORTHO05D003204 5.8e-11 72.4 169 33.1
Prupe.2G135800 Prunus persica HOM05D002872 ORTHO05D003204 7.5e-11 72.0 168 32.1
Sopen01g019280 Solanum pennellii HOM05D002872 ORTHO05D003204 7.5e-11 72.0 169 36.1
TWI59G0864 Tripterygium wilfordii HOM05D002872 ORTHO05D003204 7.5e-11 72.0 196 28.1
CANSAT11G1709 Cannabis sativa HOM05D002872 ORTHO05D003204 9.8e-11 71.6 146 39.0
GSVIVG01018179001 Vitis vinifera HOM05D002872 ORTHO05D003204 9.8e-11 71.6 234 28.2
Solyc01g049960.4 Solanum lycopersicum HOM05D002872 ORTHO05D003204 1.3e-10 71.2 169 36.1
Dinv01806 Davidia involucrata HOM05D002872 ORTHO05D003204 1.7e-10 70.9 176 33.0
arahy.Tifrunner.gnm1.ann1.BJ2ABN Arachis hypogaea HOM05D002872 ORTHO05D003204 2.2e-10 70.5 191 32.5
Gorai.001G175600 Gossypium raimondii HOM05D002872 ORTHO05D003204 2.2e-10 70.5 175 30.3
Carub.0007s1455 Capsella rubella HOM05D002872 ORTHO05D003204 2.9e-10 70.1 255 30.6
Gohir.D07G153500 Gossypium hirsutum HOM05D002872 ORTHO05D003204 2.9e-10 70.1 173 28.9
Eucgr.D02501 Eucalyptus grandis HOM05D002872 ORTHO05D003204 3.7e-10 69.7 165 30.9
RcHm_v2.0_Chr1g0348701 Rosa chinensis HOM05D002872 ORTHO05D003204 3.7e-10 69.7 196 28.1
Os03g0324800 Oryza sativa ssp. japonica HOM05D002872 ORTHO05D003204 4.9e-10 69.3 173 30.1
AT4G26410 Arabidopsis thaliana HOM05D002872 ORTHO05D003204 6.4e-10 68.9 255 30.6
Aa31LG1G26640 Aethionema arabicum HOM05D002872 ORTHO05D003204 8.3e-10 68.6 218 26.1
Duzib133G1334 Durio zibethinus HOM05D002872 ORTHO05D003204 8.3e-10 68.6 230 25.7
Atru.chr5.218 Acer truncatum HOM05D002872 ORTHO05D003204 1.1e-09 68.2 223 26.9
BcaC09g50695 Brassica carinata HOM05D002872 ORTHO05D003204 1.1e-09 68.2 256 29.7
Cfa009531 Carpinus fangiana HOM05D002872 ORTHO05D003204 1.1e-09 68.2 161 34.8
Thhalv10001582m.g Eutrema salsugineum HOM05D002872 ORTHO05D003204 1.1e-09 68.2 240 24.6
FAN06G1805 Fragaria x ananassa HOM05D002872 ORTHO05D003204 1.1e-09 68.2 196 28.1
SGA_v2.0_scaffold6G03331 Striga asiatica HOM05D002872 ORTHO05D003204 1.1e-09 68.2 209 32.1
CSS0005850 Camellia sinensis var. sinensis HOM05D002872 ORTHO05D003204 1.4e-09 67.8 190 29.5
Potri.014G058700 Populus trichocarpa HOM05D002872 ORTHO05D003204 1.4e-09 67.8 186 26.9
BcaNung02424 Brassica carinata HOM05D002872 ORTHO05D003204 1.9e-09 67.4 256 29.3
Cc02_g24600 Coffea canephora HOM05D002872 ORTHO05D003204 1.9e-09 67.4 265 25.7
MELO3C022232.2 Cucumis melo HOM05D002872 ORTHO05D003204 1.9e-09 67.4 173 28.3
AL7G26550 Arabidopsis lyrata HOM05D002872 ORTHO05D003204 2.4e-09 67.0 255 31.8
BolC1t02152H Brassica oleracea HOM05D002872 ORTHO05D003204 2.4e-09 67.0 256 29.3
BraA01t01715Z Brassica rapa HOM05D002872 ORTHO05D003204 2.4e-09 67.0 256 29.3
QL04p035844 Quercus lobata HOM05D002872 ORTHO05D003204 2.4e-09 67.0 196 27.0
arahy.Tifrunner.gnm1.ann1.WYYM4H Arachis hypogaea HOM05D002872 ORTHO05D003204 3.2e-09 66.6 154 33.8
C03p29810 Brassica napus HOM05D002872 ORTHO05D003204 3.2e-09 66.6 240 23.8
HanXRQChr02g0057611 Helianthus annuus HOM05D002872 ORTHO05D003204 3.2e-09 66.6 182 32.4
Rhsim01G0135700 Rhododendron simsii HOM05D002872 ORTHO05D003204 3.2e-09 66.6 168 30.4
Sp4g27120 Schrenkiella parvula HOM05D002872 ORTHO05D003204 3.2e-09 66.6 218 24.8
A01p17620 Brassica napus HOM05D002872 ORTHO05D003204 4.1e-09 66.2 256 28.9
CsaV3_6G009100 Cucumis sativus L. HOM05D002872 ORTHO05D003204 4.1e-09 66.2 173 27.7
FAN06G3468 Fragaria x ananassa HOM05D002872 ORTHO05D003204 4.1e-09 66.2 196 27.6
THA.LOC104802474 Tarenaya hassleriana HOM05D002872 ORTHO05D003204 5.4e-09 65.9 240 25.0
MSTRG.4917 Avicennia marina HOM05D002872 ORTHO05D003204 7.0e-09 65.5 228 26.3
BcaC02g07131 Brassica carinata HOM05D002872 ORTHO05D003204 7.0e-09 65.5 218 23.9
CARHR233960 Cardamine hirsuta HOM05D002872 ORTHO05D003204 7.0e-09 65.5 259 28.6
COL.COLO4_12468 Corchorus olitorius HOM05D002872 ORTHO05D003204 7.0e-09 65.5 226 25.2
MBI19_g09318_MAGBIO Magnolia biondii HOM05D002872 ORTHO05D003204 7.0e-09 65.5 201 32.3
C01p22220 Brassica napus HOM05D002872 ORTHO05D003204 9.2e-09 65.1 256 28.5
Sp7g24310 Schrenkiella parvula HOM05D002872 ORTHO05D003204 9.2e-09 65.1 259 29.3
BraA03t11701Z Brassica rapa HOM05D002872 ORTHO05D003204 1.2e-08 64.7 270 26.3
A04p33620 Brassica napus HOM05D002872 ORTHO05D003204 1.6e-08 64.3 218 23.4
C04p71380 Brassica napus HOM05D002872 ORTHO05D003204 1.6e-08 64.3 240 22.9
BraA04t18825Z Brassica rapa HOM05D002872 ORTHO05D003204 1.6e-08 64.3 218 23.4
BcaC02g07132 Brassica carinata HOM05D002872 ORTHO05D003204 2.1e-08 63.9 218 23.9
BolC4t28644H Brassica oleracea HOM05D002872 ORTHO05D003204 2.1e-08 63.9 218 23.9
CiPaw.13G179400 Carya illinoinensis HOM05D002872 ORTHO05D003204 2.1e-08 63.9 218 31.2
FAN03G2579 Fragaria x ananassa HOM05D002872 ORTHO05D003204 2.1e-08 63.9 196 27.6
PGR004G0587 Punica granatum HOM05D002872 ORTHO05D003204 2.1e-08 63.9 257 26.1
Carub.0004s2765 Capsella rubella HOM05D002872 ORTHO05D003204 2.7e-08 63.5 240 23.8
TAR375G1003 Trochodendron aralioides HOM05D002872 ORTHO05D003204 2.7e-08 63.5 232 25.4
BcaB01g03298 Brassica carinata HOM05D002872 ORTHO05D003204 3.5e-08 63.2 240 23.3
Ca_07812_v3 Cicer arietinum L. HOM05D002872 ORTHO05D003204 3.5e-08 63.2 180 25.6
Cc01_g00260 Coffea canephora HOM05D002872 ORTHO05D003204 3.5e-08 63.2 263 30.8
Dinv44110 Davidia involucrata HOM05D002872 ORTHO05D003204 3.5e-08 63.2 196 27.6
PSO170G1934 Papaver somniferum HOM05D002872 ORTHO05D003204 3.5e-08 63.2 195 28.7
AT2G45060 Arabidopsis thaliana HOM05D002872 ORTHO05D003204 4.6e-08 62.8 240 23.8
FvH4_7g10760 Fragaria vesca HOM05D002872 ORTHO05D003204 4.6e-08 62.8 150 30.7
Manes.01G270200 Manihot esculenta HOM05D002872 ORTHO05D003204 4.6e-08 62.8 195 27.2
BcaC01g05164 Brassica carinata HOM05D002872 ORTHO05D003204 6.0e-08 62.4 268 25.7
A03p56670 Brassica napus HOM05D002872 ORTHO05D003204 6.0e-08 62.4 253 30.8
C07p54870 Brassica napus HOM05D002872 ORTHO05D003204 6.0e-08 62.4 129 39.5
Migut.N01761 Erythranthe guttata HOM05D002872 ORTHO05D003204 6.0e-08 62.4 186 28.0
Lalb_Chr03g0039911 Lupinus albus HOM05D002872 ORTHO05D003204 6.0e-08 62.4 179 29.1
Thecc.01G385700 Theobroma cacao HOM05D002872 ORTHO05D003204 6.0e-08 62.4 223 25.6
CDE04G2393 Ceratophyllum demersum HOM05D002872 ORTHO05D003204 7.8e-08 62.0 122 35.2
HanXRQChr06g0168971 Helianthus annuus HOM05D002872 ORTHO05D003204 7.8e-08 62.0 168 29.2
Hma1.2p1_0341F.1_g130280 Hydrangea macrophylla HOM05D002872 ORTHO05D003204 7.8e-08 62.0 266 26.3
SalBow3G2375 Salvia bowleyana HOM05D002872 ORTHO05D003204 7.8e-08 62.0 133 35.3
FvH4_3g45950 Fragaria vesca HOM05D002872 ORTHO05D003204 1.0e-07 61.6 227 27.3
Hma1.2p1_0589F.1_g184720 Hydrangea macrophylla HOM05D002872 ORTHO05D003204 1.0e-07 61.6 122 36.1
Nitab4.5_0000706g0100 Nicotiana tabacum HOM05D002872 ORTHO05D003204 1.3e-07 61.2 187 26.7
Nitab4.5_0002304g0050 Nicotiana tabacum HOM05D002872 ORTHO05D003204 1.3e-07 61.2 168 27.4
PSO017G4318 Papaver somniferum HOM05D002872 ORTHO05D003204 1.3e-07 61.2 195 28.2
QL01p007916 Quercus lobata HOM05D002872 ORTHO05D003204 1.3e-07 61.2 132 33.3
AL4G44150 Arabidopsis lyrata HOM05D002872 ORTHO05D003204 1.7e-07 60.8 240 23.3
SalBow5G0529 Salvia bowleyana HOM05D002872 ORTHO05D003204 1.7e-07 60.8 168 29.2
Solyc01g090770.4 Solanum lycopersicum HOM05D002872 ORTHO05D003204 1.7e-07 60.8 196 25.0
arahy.Tifrunner.gnm1.ann1.PGQ24G Arachis hypogaea HOM05D002872 ORTHO05D003204 2.3e-07 60.5 179 28.5
A03p24980 Brassica napus HOM05D002872 ORTHO05D003204 2.3e-07 60.5 220 25.0
unitig_22.g6799 Utricularia gibba HOM05D002872 ORTHO05D003204 2.3e-07 60.5 267 25.1
Aqoxy7G00779 Aquilegia oxysepala HOM05D002872 ORTHO05D003204 3.0e-07 60.1 232 25.0
PGSC0003DMG400025977 Solanum tuberosum HOM05D002872 ORTHO05D003204 3.0e-07 60.1 196 25.5
Nn6g33937 Nelumbo nucifera HOM05D002872 ORTHO05D003204 3.9e-07 59.7 257 24.9
DCAR_001960 Daucus carota HOM05D002872 ORTHO05D003204 5.0e-07 59.3 131 33.6
MSTRG.12807 Avicennia marina HOM05D002872 ORTHO05D003204 8.6e-07 58.5 153 34.0
CARHR140310 Cardamine hirsuta HOM05D002872 ORTHO05D003204 8.6e-07 58.5 240 22.9
Sopen01g036500 Solanum pennellii HOM05D002872 ORTHO05D003204 8.6e-07 58.5 196 25.0
ClCG06G002980 Citrullus lanatus HOM05D002872 ORTHO05D003204 1.5e-06 57.8 266 24.8
Thhalv10026011m.g Eutrema salsugineum HOM05D002872 ORTHO05D003204 1.5e-06 57.8 176 30.7
MBI04_g09510_MAGBIO Magnolia biondii HOM05D002872 ORTHO05D003204 1.5e-06 57.8 175 28.0
Peaxi162Scf00377g00042 Petunia axillaris HOM05D002872 ORTHO05D003204 1.5e-06 57.8 223 25.6
MCO13G396 Micromonas commoda HOM05D002872 ORTHO05D269233 1.9e-06 57.4 272 24.3
TPR.G39127 Trifolium pratense HOM05D002872 ORTHO05D003204 1.9e-06 57.4 180 24.4
FAN16G3031 Fragaria x ananassa HOM05D002872 ORTHO05D003204 2.5e-06 57.0 206 28.6
Lj1g0022495 Lotus japonicus HOM05D002872 ORTHO05D003204 2.5e-06 57.0 179 24.6
BolC7t45975H Brassica oleracea HOM05D002872 ORTHO05D003204 3.3e-06 56.6 269 28.6
Cpa.g.c27558 Carica papaya HOM05D002872 ORTHO05D003204 4.3e-06 56.2 150 29.3
FAN10G3048 Fragaria x ananassa HOM05D002872 ORTHO05D003204 4.3e-06 56.2 264 25.8
SGA_v2.0_scaffold43G16519 Striga asiatica HOM05D002872 ORTHO05D003204 4.3e-06 56.2 172 26.7
CAN.G899.13 Capsicum annuum HOM05D002872 ORTHO05D003204 5.6e-06 55.8 168 27.4
FAN01G1014 Fragaria x ananassa HOM05D002872 ORTHO05D003204 5.6e-06 55.8 264 25.8


User provided reference genes

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