Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre10.g442800 Chlamydomonas reinhardtii HOM05D011917 ORTHO05D008140 0.0e+00 1300.0 660 100.0
Cre10.g433200 Chlamydomonas reinhardtii HOM05D011917 ORTHO05D008140 4.0e-303 1044.3 627 86.4
Cre10.g433250 Chlamydomonas reinhardtii HOM05D011917 ORTHO05D008140 4.0e-303 1044.3 627 86.4
Cre10.g442600 Chlamydomonas reinhardtii HOM05D011917 ORTHO05D008140 1.9e-289 998.8 608 84.5
AagrBONN_evm.TU.Sc2ySwM_368.911 Anthoceros agrestis HOM05D011917 ORTHO05D008140 4.6e-121 439.5 631 41.4
Pp3c12_11660 Physcomitrium patens HOM05D011917 ORTHO05D008140 1.0e-120 438.3 605 42.5
Pp3c3_22020 Physcomitrium patens HOM05D011917 ORTHO05D008140 1.9e-114 417.5 566 42.2
MCO14G576 Micromonas commoda HOM05D011917 ORTHO05D008140 1.6e-113 414.5 582 40.9
Mapoly0014s0107 Marchantia polymorpha HOM05D011917 ORTHO05D008140 1.7e-112 411.0 610 40.3
MCO14G577 Micromonas commoda HOM05D011917 ORTHO05D008140 1.9e-111 407.5 564 41.5
SEGI_03574 Sequoiadendron giganteum HOM05D011917 ORTHO05D008140 1.6e-110 404.4 648 38.4
PRCOL_00006898 Prasinoderma coloniale HOM05D011917 ORTHO05D008140 1.8e-109 401.0 593 40.6
Cfa022348 Carpinus fangiana HOM05D011917 ORTHO05D008140 1.3e-91 341.7 557 37.9
CBR_g17667 Chara braunii HOM05D011917 ORTHO05D008140 4.2e-90 336.7 591 37.1
Ca_29155_v3 Cicer arietinum L. HOM05D011917 ORTHO05D008140 2.8e-17 94.7 344 28.5
Duzib187G1499 Durio zibethinus HOM05D000323 ORTHO05D000201 9.5e-10 69.7 557 21.5
TPR.G15585 Trifolium pratense HOM05D000323 ORTHO05D000201 2.1e-09 68.6 479 22.3
AT4G38050 Arabidopsis thaliana HOM05D000323 ORTHO05D000201 4.7e-09 67.4 489 21.9
AL7G12590 Arabidopsis lyrata HOM05D000323 ORTHO05D000201 6.1e-09 67.0 489 22.1
Thhalv10024538m.g Eutrema salsugineum HOM05D000323 ORTHO05D000201 8.0e-09 66.6 485 22.1
CAN.G644.28 Capsicum annuum HOM05D000323 ORTHO05D000201 1.4e-08 65.9 481 21.4
Solyc11g066900.2 Solanum lycopersicum HOM05D000323 ORTHO05D000201 1.4e-08 65.9 477 20.5
Ciclev10024972m.g Citrus clementina HOM05D000323 ORTHO05D000201 2.3e-08 65.1 555 22.3
Carub.0007s0217 Capsella rubella HOM05D000323 ORTHO05D000201 3.1e-08 64.7 550 21.6
Sp7g35690 Schrenkiella parvula HOM05D000323 ORTHO05D000201 3.1e-08 64.7 554 22.0
BolC1t00114H Brassica oleracea HOM05D000323 ORTHO05D000201 4.0e-08 64.3 475 22.7
Actinidia24181 Actinidia chinensis HOM05D000323 ORTHO05D000201 5.2e-08 63.9 479 20.7
BcaNung00946 Brassica carinata HOM05D000323 ORTHO05D000201 5.2e-08 63.9 475 22.7
C01p01160 Brassica napus HOM05D000323 ORTHO05D000201 5.2e-08 63.9 475 22.5
Atru.chr3.1236 Acer truncatum HOM05D000323 ORTHO05D000201 6.8e-08 63.5 549 21.9
Cc01_g09770 Coffea canephora HOM05D000323 ORTHO05D000201 6.8e-08 63.5 548 22.6
Lsat_1_v5_gn_6_41321 Lactuca sativa HOM05D000323 ORTHO05D000201 6.8e-08 63.5 536 22.6
Sopen11g026610 Solanum pennellii HOM05D000323 ORTHO05D000201 8.9e-08 63.2 537 20.3
PGSC0003DMG400026537 Solanum tuberosum HOM05D000323 ORTHO05D000201 8.9e-08 63.2 477 20.3
Aa31LG6G14990 Aethionema arabicum HOM05D000323 ORTHO05D000201 1.5e-07 62.4 489 21.7
ATR0820G281 Amborella trichopoda HOM05D000323 ORTHO05D000201 1.5e-07 62.4 552 21.0
Aqoxy5G01376 Aquilegia oxysepala HOM05D000323 ORTHO05D000201 1.5e-07 62.4 544 22.6
Actinidia10207 Actinidia chinensis HOM05D000323 ORTHO05D000201 2.0e-07 62.0 208 27.9
Lalb_Chr02g0144941 Lupinus albus HOM05D000323 ORTHO05D000201 2.0e-07 62.0 153 33.3
Peaxi162Scf00002g05210 Petunia axillaris HOM05D000323 ORTHO05D000201 2.0e-07 62.0 484 21.5
Pp3c13_10930 Physcomitrium patens HOM05D000323 ORTHO05D000201 2.0e-07 62.0 475 21.1
Solyc10g049280.2 Solanum lycopersicum HOM05D000323 ORTHO05D000201 2.0e-07 62.0 545 21.3
Sopen10g020450 Solanum pennellii HOM05D000323 ORTHO05D000201 2.0e-07 62.0 544 21.5
Manes.13G100700 Manihot esculenta HOM05D000323 ORTHO05D000201 2.6e-07 61.6 479 21.5
Psat7g191080 Pisum sativum HOM05D000323 ORTHO05D000201 2.6e-07 61.6 479 21.9
Sabra09G0117100 Salix brachista HOM05D000323 ORTHO05D000201 2.6e-07 61.6 483 22.6
Ca_01676_v3 Cicer arietinum L. HOM05D000323 ORTHO05D000201 3.4e-07 61.2 482 21.6
DCAR_014181 Daucus carota HOM05D000323 ORTHO05D000201 3.4e-07 61.2 480 22.3
Medtr4g055290 Medicago truncatula HOM05D000323 ORTHO05D000201 3.4e-07 61.2 479 22.5
A01p01040 Brassica napus HOM05D000323 ORTHO05D000201 4.4e-07 60.8 470 22.1
BraA01t00102Z Brassica rapa HOM05D000323 ORTHO05D000201 4.4e-07 60.8 470 22.1
Psat2g085080 Pisum sativum HOM05D000323 ORTHO05D000201 4.4e-07 60.8 538 20.6
SalBow6G0634 Salvia bowleyana HOM05D000323 ORTHO05D000201 4.4e-07 60.8 482 21.6
CSS0043416 Camellia sinensis var. sinensis HOM05D000323 ORTHO05D000201 5.8e-07 60.5 533 23.1
A02p42570 Brassica napus HOM05D000323 ORTHO05D000201 7.5e-07 60.1 544 23.7
ECA238G4318 Erigeron canadensis HOM05D000323 ORTHO05D000201 7.5e-07 60.1 485 21.9
Sp2g26030 Schrenkiella parvula HOM05D000323 ORTHO05D000201 7.5e-07 60.1 545 23.7
CSS0006212 Camellia sinensis var. sinensis HOM05D000323 ORTHO05D000201 9.8e-07 59.7 554 22.0
CSS0011021 Camellia sinensis var. sinensis HOM05D000323 ORTHO05D000201 9.8e-07 59.7 554 22.0
Gohir.D11G053700 Gossypium hirsutum HOM05D000323 ORTHO05D000201 9.8e-07 59.7 497 21.9
Lj3g0008838 Lotus japonicus HOM05D000323 ORTHO05D000201 9.8e-07 59.7 479 21.3
Dinv12519 Davidia involucrata HOM05D000323 ORTHO05D000201 1.3e-06 59.3 488 21.7
Nitab4.5_0004296g0040 Nicotiana tabacum HOM05D000323 ORTHO05D000201 1.3e-06 59.3 484 21.5
Pp3s46_310 Physcomitrium patens HOM05D000323 ORTHO05D034614 1.3e-06 59.3 255 26.7
Actinidia07208 Actinidia chinensis HOM05D000323 ORTHO05D000201 1.7e-06 58.9 481 21.0
AL8G39900 Arabidopsis lyrata HOM05D000323 ORTHO05D000201 1.7e-06 58.9 545 23.1
CARHR246460 Cardamine hirsuta HOM05D000323 ORTHO05D000201 1.7e-06 58.9 576 21.5
Thhalv10003977m.g Eutrema salsugineum HOM05D000323 ORTHO05D000201 1.7e-06 58.9 545 23.3
Lj2g0003522 Lotus japonicus HOM05D000323 ORTHO05D000201 1.7e-06 58.9 550 21.6
SMO201G0183 Selaginella moellendorffii HOM05D000323 ORTHO05D000201 1.7e-06 58.9 477 22.4
PGSC0003DMG400025837 Solanum tuberosum HOM05D000323 ORTHO05D000201 1.7e-06 58.9 534 22.7
AT5G62890 Arabidopsis thaliana HOM05D000323 ORTHO05D000201 2.2e-06 58.5 545 23.1
Ca_19374_v3 Cicer arietinum L. HOM05D000323 ORTHO05D000201 2.2e-06 58.5 479 20.9
MELO3C004794.2 Cucumis melo HOM05D000323 ORTHO05D000201 2.2e-06 58.5 544 21.9
HanXRQChr14g0452011 Helianthus annuus HOM05D000323 ORTHO05D000201 2.2e-06 58.5 547 20.5
VMungo1080G1197 Vigna mungo HOM05D000323 ORTHO05D000201 2.2e-06 58.5 160 27.5
BraA02t09185Z Brassica rapa HOM05D000323 ORTHO05D000201 2.9e-06 58.2 544 23.2
Ciclev10027911m.g Citrus clementina HOM05D000323 ORTHO05D000201 2.9e-06 58.2 490 21.2
MBI16_g27572_MAGBIO Magnolia biondii HOM05D000323 ORTHO05D000201 2.9e-06 58.2 160 29.4
Sabra04G0126800 Salix brachista HOM05D000323 ORTHO05D000201 2.9e-06 58.2 481 22.0
PGSC0003DMG400003235 Solanum tuberosum HOM05D000323 ORTHO05D000201 2.9e-06 58.2 544 21.9
HanXRQChr07g0188781 Helianthus annuus HOM05D000323 ORTHO05D000201 3.7e-06 57.8 486 22.0
HanXRQChr07g0197771 Helianthus annuus HOM05D000323 ORTHO05D000201 3.7e-06 57.8 481 21.2
Os09g0381100 Oryza sativa ssp. japonica HOM05D000323 ORTHO05D000201 3.7e-06 57.8 533 25.3
Sabra07G0008900 Salix brachista HOM05D000323 ORTHO05D000201 3.7e-06 57.8 479 20.9
Sc12g0004190 Simmondsia chinensis HOM05D000323 ORTHO05D000201 3.7e-06 57.8 483 21.7
MSTRG.15684 Avicennia marina HOM05D000323 ORTHO05D000201 4.9e-06 57.4 572 21.0
BcaC03g18181 Brassica carinata HOM05D000323 ORTHO05D000201 4.9e-06 57.4 544 23.3
A09p07910 Brassica napus HOM05D000323 ORTHO05D000201 4.9e-06 57.4 545 23.3
C09p08910 Brassica napus HOM05D000323 ORTHO05D000201 4.9e-06 57.4 545 23.3
BolC2t12306H Brassica oleracea HOM05D000323 ORTHO05D000201 4.9e-06 57.4 544 23.3
BolC9t53804H Brassica oleracea HOM05D000323 ORTHO05D000201 4.9e-06 57.4 545 23.3
BraA09t36442Z Brassica rapa HOM05D000323 ORTHO05D000201 4.9e-06 57.4 545 23.3
Glyma.12G181900 Glycine max HOM05D000323 ORTHO05D000201 4.9e-06 57.4 168 26.8
Manes.04G008200 Manihot esculenta HOM05D000323 ORTHO05D000201 4.9e-06 57.4 169 27.8
QL06p035856 Quercus lobata HOM05D000323 ORTHO05D000201 4.9e-06 57.4 479 22.8
Rhsim10G0173300 Rhododendron simsii HOM05D000323 ORTHO05D000201 4.9e-06 57.4 563 21.0
VMungo0251G1413 Vigna mungo HOM05D000323 ORTHO05D000201 4.9e-06 57.4 558 21.0
Carub.0008s2360 Capsella rubella HOM05D000323 ORTHO05D000201 6.4e-06 57.0 545 22.9
CARHR258720 Cardamine hirsuta HOM05D000323 ORTHO05D000201 6.4e-06 57.0 526 22.6
Duzib068G0889 Durio zibethinus HOM05D000323 ORTHO05D000201 6.4e-06 57.0 552 21.9
Eucgr.B02555 Eucalyptus grandis HOM05D000323 ORTHO05D000201 6.4e-06 57.0 543 21.4
Glyma.13G318900 Glycine max HOM05D000323 ORTHO05D000201 6.4e-06 57.0 482 20.7
Lalb_Chr03g0027921 Lupinus albus HOM05D000323 ORTHO05D000201 6.4e-06 57.0 162 26.5
Phvul.005G127000 Phaseolus vulgaris HOM05D000323 ORTHO05D000201 6.4e-06 57.0 160 26.2
Sed0008457 Sechium edule HOM05D000323 ORTHO05D000201 6.4e-06 57.0 479 22.3
SEGI_34270 Sequoiadendron giganteum HOM05D000323 ORTHO05D000201 6.4e-06 57.0 167 29.3
vmacro13010 Vaccinium macrocarpon HOM05D000323 ORTHO05D000201 6.4e-06 57.0 490 22.7
Zm00001eb367000 Zea mays HOM05D000323 ORTHO05D000201 6.4e-06 57.0 552 20.5
BcaB04g19961 Brassica carinata HOM05D000323 ORTHO05D000201 8.3e-06 56.6 545 23.5
BcaC01g02533 Brassica carinata HOM05D000323 ORTHO05D000201 8.3e-06 56.6 545 23.3
C03p63840 Brassica napus HOM05D000323 ORTHO05D000201 8.3e-06 56.6 545 23.3
BolC3t18639H Brassica oleracea HOM05D000323 ORTHO05D000201 8.3e-06 56.6 545 23.3
CSS0030676 Camellia sinensis var. sinensis HOM05D000323 ORTHO05D000201 8.3e-06 56.6 540 23.0
Carub.0008s0989 Capsella rubella HOM05D000323 ORTHO05D000201 8.3e-06 56.6 541 21.4
CsaV3_1G014520 Cucumis sativus L. HOM05D000323 ORTHO05D000201 8.3e-06 56.6 544 21.5
Eucgr.K02873 Eucalyptus grandis HOM05D000323 ORTHO05D000201 8.3e-06 56.6 545 21.8
HanXRQChr10g0290781 Helianthus annuus HOM05D000323 ORTHO05D000201 8.3e-06 56.6 162 27.2
Hma1.2p1_0002F.1_g002670 Hydrangea macrophylla HOM05D000323 ORTHO05D000201 8.3e-06 56.6 542 22.5
Lj3g0011449 Lotus japonicus HOM05D000323 ORTHO05D000201 8.3e-06 56.6 484 20.2
Medtr8g068550 Medicago truncatula HOM05D000323 ORTHO05D000201 8.3e-06 56.6 572 21.7
Nitab4.5_0001458g0080 Nicotiana tabacum HOM05D000323 ORTHO05D000201 8.3e-06 56.6 179 29.6
Phvul.002G146700 Phaseolus vulgaris HOM05D000323 ORTHO05D000201 8.3e-06 56.6 554 20.0


User provided reference genes

Program Settings