Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre10.g441100 Chlamydomonas reinhardtii HOM05D005051 ORTHO05D005945 0.0e+00 1460.7 767 100.0
Mapoly0173s0012 Marchantia polymorpha HOM05D005051 ORTHO05D005945 1.1e-57 229.2 732 31.7
THA.LOC104818965 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 7.0e-57 226.5 698 30.4
Haze_24821 Corylus avellana HOM05D005051 ORTHO05D005945 2.0e-56 224.9 674 31.3
Cfa002585 Carpinus fangiana HOM05D005051 ORTHO05D005945 7.8e-56 223.0 678 31.0
PSO384G3368 Papaver somniferum HOM05D005051 ORTHO05D005945 5.0e-55 220.3 694 30.8
TAR365G1079 Trochodendron aralioides HOM05D005051 ORTHO05D005945 4.3e-54 217.2 695 31.9
PGR083G2429 Punica granatum HOM05D005051 ORTHO05D005945 7.3e-54 216.5 708 29.8
CsaV3_7G026000 Cucumis sativus L. HOM05D005051 ORTHO05D005945 9.5e-54 216.1 677 31.2
Sc17g0002210 Simmondsia chinensis HOM05D005051 ORTHO05D005945 1.2e-53 215.7 682 30.6
THA.LOC104802665 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 1.2e-53 215.7 697 29.3
Aa31LG5G17700 Aethionema arabicum HOM05D005051 ORTHO05D005945 1.6e-53 215.3 692 28.5
Sed0004391 Sechium edule HOM05D005051 ORTHO05D005945 2.8e-53 214.5 693 31.2
AUR62001109 Chenopodium quinoa HOM05D005051 ORTHO05D005945 3.6e-53 214.2 681 30.8
Thecc.01G222800 Theobroma cacao HOM05D005051 ORTHO05D005945 3.6e-53 214.2 680 30.4
AUR62008933 Chenopodium quinoa HOM05D005051 ORTHO05D005945 1.1e-52 212.6 680 30.1
MELO3C021052.2 Cucumis melo HOM05D005051 ORTHO05D005945 1.1e-52 212.6 692 30.8
ECA236G0910 Erigeron canadensis HOM05D005051 ORTHO05D005945 1.1e-52 212.6 690 29.1
ClCG09G008890 Citrullus lanatus HOM05D005051 ORTHO05D005945 2.3e-52 211.5 701 30.7
Sed0023522 Sechium edule HOM05D005051 ORTHO05D005945 4.0e-52 210.7 694 30.4
vmacro02772 Vaccinium macrocarpon HOM05D005051 ORTHO05D005945 5.2e-52 210.3 685 30.1
QL09p053053 Quercus lobata HOM05D005051 ORTHO05D005945 1.2e-51 209.1 709 29.9
Manes.13G046400 Manihot esculenta HOM05D005051 ORTHO05D005945 1.5e-51 208.8 683 29.3
ATR0564G162 Amborella trichopoda HOM05D005051 ORTHO05D005945 2.0e-51 208.4 624 31.7
Actinidia30063 Actinidia chinensis HOM05D005051 ORTHO05D005945 2.6e-51 208.0 676 30.3
Aqoxy4G00040 Aquilegia oxysepala HOM05D005051 ORTHO05D005945 3.4e-51 207.6 685 28.5
Glyma.03G064400 Glycine max HOM05D005051 ORTHO05D005945 3.4e-51 207.6 688 29.4
QL09p052190 Quercus lobata HOM05D005051 ORTHO05D005945 3.4e-51 207.6 709 29.9
TWI36G0473 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 3.4e-51 207.6 680 29.3
Nn2g14125 Nelumbo nucifera HOM05D005051 ORTHO05D005945 5.8e-51 206.8 677 29.4
CSS0047345 Camellia sinensis var. sinensis HOM05D005051 ORTHO05D005945 7.5e-51 206.5 680 30.3
FAN27G0551 Fragaria x ananassa HOM05D005051 ORTHO05D005945 7.5e-51 206.5 714 29.6
EL10Ac7g17867 Beta vulgaris HOM05D005051 ORTHO05D005945 9.9e-51 206.1 717 29.7
HanXRQChr04g0108251 Helianthus annuus HOM05D005051 ORTHO05D005945 9.9e-51 206.1 694 28.7
PSO339G3208 Papaver somniferum HOM05D005051 ORTHO05D005945 9.9e-51 206.1 697 30.6
RcHm_v2.0_Chr6g0284351 Rosa chinensis HOM05D005051 ORTHO05D005945 9.9e-51 206.1 684 29.5
AT3G07140 Arabidopsis thaliana HOM05D005051 ORTHO05D005945 1.3e-50 205.7 704 28.1
MCO05G006 Micromonas commoda HOM05D005051 ORTHO05D005945 1.3e-50 205.7 723 31.3
Cpa.g.sc8.135 Carica papaya HOM05D005051 ORTHO05D005945 1.7e-50 205.3 673 30.5
Glyma.16G101100 Glycine max HOM05D005051 ORTHO05D005945 1.7e-50 205.3 678 29.9
Duzib138G1384 Durio zibethinus HOM05D005051 ORTHO05D005945 2.2e-50 204.9 713 28.5
Gorai.001G188000 Gossypium raimondii HOM05D005051 ORTHO05D005945 2.9e-50 204.5 702 29.1
DCAR_012658 Daucus carota HOM05D005051 ORTHO05D005945 3.7e-50 204.1 684 30.4
Medtr8g013045 Medicago truncatula HOM05D005051 ORTHO05D005945 3.7e-50 204.1 709 29.5
Gohir.D07G164100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 4.9e-50 203.8 702 29.1
Phvul.010G020500 Phaseolus vulgaris HOM05D005051 ORTHO05D005945 6.4e-50 203.4 704 29.8
VMungo1309G1922 Vigna mungo HOM05D005051 ORTHO05D005945 6.4e-50 203.4 701 29.7
Dinv19188 Davidia involucrata HOM05D005051 ORTHO05D005945 1.1e-49 202.6 676 30.0
Migut.D02493 Erythranthe guttata HOM05D005051 ORTHO05D005945 1.1e-49 202.6 689 28.7
SMO259G0038 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.1e-49 202.6 684 30.0
CARHR081740 Cardamine hirsuta HOM05D005051 ORTHO05D005945 1.9e-49 201.8 695 27.8
CDE05G0682 Ceratophyllum demersum HOM05D005051 ORTHO05D005945 1.9e-49 201.8 718 28.7
Peaxi162Scf00398g00089 Petunia axillaris HOM05D005051 ORTHO05D005945 1.9e-49 201.8 696 28.3
Cc01_g16860 Coffea canephora HOM05D005051 ORTHO05D005945 2.4e-49 201.4 718 29.7
TPR.G17135 Trifolium pratense HOM05D005051 ORTHO05D005945 2.4e-49 201.4 726 28.9
FAN24G2416 Fragaria x ananassa HOM05D005051 ORTHO05D005945 3.2e-49 201.1 709 29.1
SEGI_10192 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 3.2e-49 201.1 650 29.7
Sopen09g023140 Solanum pennellii HOM05D005051 ORTHO05D005945 3.2e-49 201.1 678 29.1
BcaC05g29752 Brassica carinata HOM05D005051 ORTHO05D005945 4.1e-49 200.7 692 28.6
Gohir.A11G139100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 4.1e-49 200.7 696 28.6
Atru.chr6.1506 Acer truncatum HOM05D005051 ORTHO05D005945 5.4e-49 200.3 687 29.8
Eucgr.E03305 Eucalyptus grandis HOM05D005051 ORTHO05D005945 5.4e-49 200.3 712 27.9
FvH4_2g18730 Fragaria vesca HOM05D005051 ORTHO05D005945 5.4e-49 200.3 709 29.2
Carub.0003s0666 Capsella rubella HOM05D005051 ORTHO05D005945 7.1e-49 199.9 678 28.3
CiPaw.03G147700 Carya illinoinensis HOM05D005051 ORTHO05D005945 7.1e-49 199.9 712 28.8
GSVIVG01011065001 Vitis vinifera HOM05D005051 ORTHO05D005945 7.1e-49 199.9 689 28.7
Ah.02g115620 Amaranthus hybridus HOM05D005051 ORTHO05D005945 9.2e-49 199.5 694 31.0
AL3G18390 Arabidopsis lyrata HOM05D005051 ORTHO05D005945 1.2e-48 199.1 678 28.2
Thhalv10020265m.g Eutrema salsugineum HOM05D005051 ORTHO05D005945 1.2e-48 199.1 680 28.2
COL.COLO4_15648 Corchorus olitorius HOM05D005051 ORTHO05D005945 1.6e-48 198.7 684 27.9
MD13G1217900 Malus domestica HOM05D005051 ORTHO05D005945 1.6e-48 198.7 703 30.9
Lsat_1_v5_gn_8_89520 Lactuca sativa HOM05D005051 ORTHO05D005945 2.1e-48 198.4 697 28.7
Solyc09g059960.3 Solanum lycopersicum HOM05D005051 ORTHO05D005945 3.5e-48 197.6 678 28.6
A05p41070 Brassica napus HOM05D005051 ORTHO05D005945 4.6e-48 197.2 693 27.6
SalBow6G3716 Salvia bowleyana HOM05D005051 ORTHO05D005945 1.3e-47 195.7 703 28.7
C05p60240 Brassica napus HOM05D005051 ORTHO05D005945 1.7e-47 195.3 693 27.1
Gohir.A07G158000 Gossypium hirsutum HOM05D005051 ORTHO05D005945 2.3e-47 194.9 690 28.6
Lalb_Chr13g0291091 Lupinus albus HOM05D005051 ORTHO05D005945 2.3e-47 194.9 668 29.8
Zm00001eb269850 Zea mays HOM05D005051 ORTHO05D005945 2.3e-47 194.9 710 29.7
BolC5t34674H Brassica oleracea HOM05D005051 ORTHO05D005945 3.0e-47 194.5 693 27.0
BraA05t22834Z Brassica rapa HOM05D005051 ORTHO05D005945 3.0e-47 194.5 692 27.3
PGSC0003DMG400023098 Solanum tuberosum HOM05D005051 ORTHO05D005945 3.0e-47 194.5 679 28.1
MSTRG.18843 Avicennia marina HOM05D005051 ORTHO05D005945 5.1e-47 193.7 705 27.7
BcaC05g29842 Brassica carinata HOM05D005051 ORTHO05D005945 5.1e-47 193.7 687 26.9
Psat4g199920 Pisum sativum HOM05D005051 ORTHO05D005945 5.1e-47 193.7 705 28.8
arahy.Tifrunner.gnm1.ann1.SK15G6 Arachis hypogaea HOM05D005051 ORTHO05D005945 6.6e-47 193.4 708 30.2
SGA_v2.0_scaffold171G38944 Striga asiatica HOM05D005051 ORTHO05D005945 8.6e-47 193.0 683 28.4
Sabra14G0142400 Salix brachista HOM05D005051 ORTHO05D005945 1.5e-46 192.2 681 28.3
Duzib211G0096 Durio zibethinus HOM05D005051 ORTHO05D005945 1.9e-46 191.8 681 28.3
arahy.Tifrunner.gnm1.ann1.8DP3DE Arachis hypogaea HOM05D005051 ORTHO05D005945 2.5e-46 191.4 691 29.7
CAN.G3.1 Capsicum annuum HOM05D005051 ORTHO05D005945 2.5e-46 191.4 689 27.9
CBR_g44939 Chara braunii HOM05D005051 ORTHO05D005945 3.3e-46 191.0 816 27.7
Ca_23236_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 7.3e-46 189.9 712 28.5
Potri.014G190600 Populus trichocarpa HOM05D005051 ORTHO05D005945 1.2e-45 189.1 713 28.2
Nitab4.5_0000045g0340 Nicotiana tabacum HOM05D005051 ORTHO05D005945 3.6e-45 187.6 682 28.0
Lj3g0013392 Lotus japonicus HOM05D005051 ORTHO05D005945 4.7e-45 187.2 700 28.0
Pp3c21_19350 Physcomitrium patens HOM05D005051 ORTHO05D005945 4.7e-45 187.2 643 30.6
MD16G1223000 Malus domestica HOM05D005051 ORTHO05D005945 1.8e-44 185.3 646 30.2
Ciclev10019161m.g Citrus clementina HOM05D005051 ORTHO05D005945 3.1e-44 184.5 715 28.5
Oeu018495.2 Olea europaea HOM05D005051 ORTHO05D005945 3.1e-44 184.5 668 27.4
Gohir.D11G145300 Gossypium hirsutum HOM05D005051 ORTHO05D005945 5.2e-44 183.7 693 27.8
Lj2A1128T45 Lonicera japonica HOM05D005051 ORTHO05D005945 1.2e-43 182.6 670 28.4
FAN15G1450 Fragaria x ananassa HOM05D005051 ORTHO05D005945 1.5e-43 182.2 648 29.3
Prupe.8G200800 Prunus persica HOM05D005051 ORTHO05D005945 2.4e-41 174.9 648 28.9
Oeu035785.1 Olea europaea HOM05D005051 ORTHO05D005945 4.1e-41 174.1 718 26.5
SHI23570 Sapria himalayana HOM05D005051 ORTHO05D005945 1.9e-38 165.2 726 26.3
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 1.2e-37 162.5 710 28.2
AagrBONN_evm.TU.Sc2ySwM_368.938 Anthoceros agrestis HOM05D005051 ORTHO05D005945 2.4e-36 158.3 531 29.0
Sp3g06080 Schrenkiella parvula HOM05D005051 ORTHO05D005945 2.0e-35 155.2 508 28.0
Gorai.007G155800 Gossypium raimondii HOM05D005051 ORTHO05D005945 2.9e-34 151.4 687 26.1
Os11g0479232 Oryza sativa ssp. japonica HOM05D005051 ORTHO05D005945 7.1e-33 146.7 208 41.8
Medtr8g013050 Medicago truncatula HOM05D005051 ORTHO05D005945 3.0e-31 141.4 667 26.7
TWI18G1080 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 3.9e-31 141.0 186 40.9
Glyma.13G182400 Glycine max HOM05D005051 ORTHO05D005945 1.5e-27 129.0 180 39.4
Hund18405 Selenicereus undatus HOM05D005051 ORTHO05D005945 3.4e-27 127.9 581 28.2
SEGI_29510 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 1.2e-24 119.4 549 26.4
Sp2g19120 Schrenkiella parvula HOM05D005051 ORTHO05D005945 2.1e-24 118.6 230 33.5
Actinidia31469 Actinidia chinensis HOM05D005051 ORTHO05D005945 1.6e-21 109.0 256 34.4
Cfa025345 Carpinus fangiana HOM05D005051 ORTHO05D005945 3.7e-21 107.8 727 24.8
COL.COLO4_36899 Corchorus olitorius HOM05D005051 ORTHO05D005945 1.2e-19 102.8 228 33.8
unitig_899.g15019 Utricularia gibba HOM05D005051 ORTHO05D005945 1.2e-19 102.8 527 26.6
Nitab4.5_0000345g0090 Nicotiana tabacum HOM05D005051 ORTHO05D000055 1.9e-14 85.5 126 42.1
Glyma.13G059866 Glycine max HOM05D005051 ORTHO05D005945 2.5e-14 85.1 123 40.7
HPP92_008216 Vanilla planifolia HOM05D005051 ORTHO05D005945 4.3e-14 84.3 144 42.4
Glyma.13G196100 Glycine max HOM05D005051 ORTHO05D005945 9.6e-14 83.2 162 30.9
SMO259G0028 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 8.2e-13 80.1 182 30.2
SMO174G0204 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.0e-10 73.2 167 34.7
SMO259G0021 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.3e-10 72.8 191 34.0
SMO259G0024 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.3e-10 72.8 191 34.0
Ca_23237_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 1.2e-08 66.2 72 50.0
QL09p048654 Quercus lobata HOM05D005051 ORTHO05D005945 5.1e-07 60.8 138 31.9
Medtr6g061260 Medicago truncatula HOM05D005051 ORTHO05D005945 8.7e-07 60.1 73 46.6
unitig_899.g15018 Utricularia gibba HOM05D003904 ORTHO05D004378 1.5e-06 59.3 64 48.4
TPR.G17133 Trifolium pratense HOM05D005051 ORTHO05D005945 2.5e-06 58.5 137 30.7


User provided reference genes

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