Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre10.g436150 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 8.8e-117 423.7 224 100.0
SEGI_05441 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 4.4e-44 182.2 223 46.2
Pp3c2_13260 Physcomitrium patens HOM05D003866 ORTHO05D004508 9.9e-44 181.0 228 44.3
Mapoly0028s0053 Marchantia polymorpha HOM05D003866 ORTHO05D004508 1.9e-42 176.8 220 46.8
Aa31LG5G8830 Aethionema arabicum HOM05D003866 ORTHO05D004508 2.4e-42 176.4 202 48.0
AagrBONN_evm.TU.Sc2ySwM_228.2237 Anthoceros agrestis HOM05D003866 ORTHO05D004508 7.1e-42 174.9 221 46.2
Aqoxy5G00709 Aquilegia oxysepala HOM05D003866 ORTHO05D004508 7.1e-42 174.9 202 48.0
DCAR_024209 Daucus carota HOM05D003866 ORTHO05D004508 7.1e-42 174.9 202 47.0
TAR636G2430 Trochodendron aralioides HOM05D003866 ORTHO05D004508 9.3e-42 174.5 221 45.7
unitig_8.g3710 Utricularia gibba HOM05D003866 ORTHO05D004508 9.3e-42 174.5 197 45.7
Eucgr.K03458 Eucalyptus grandis HOM05D003866 ORTHO05D004508 1.2e-41 174.1 202 47.0
AT2G27490 Arabidopsis thaliana HOM05D003866 ORTHO05D004508 4.6e-41 172.2 202 47.5
vmacro02471 Vaccinium macrocarpon HOM05D003866 ORTHO05D004508 6.0e-41 171.8 191 48.7
AL4G21480 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 7.9e-41 171.4 202 47.0
Rhsim13G0013000 Rhododendron simsii HOM05D003866 ORTHO05D004508 7.9e-41 171.4 191 49.2
MSTRG.18171 Avicennia marina HOM05D003866 ORTHO05D004508 1.0e-40 171.0 202 45.0
CANSAT25G0267 Cannabis sativa HOM05D003866 ORTHO05D004508 1.0e-40 171.0 191 47.1
Nn4g25882 Nelumbo nucifera HOM05D003866 ORTHO05D004508 1.0e-40 171.0 223 43.0
CANSAT25G2840 Cannabis sativa HOM05D003866 ORTHO05D004508 1.7e-40 170.2 191 46.6
Carub.0004s0812 Capsella rubella HOM05D003866 ORTHO05D004508 1.7e-40 170.2 187 49.2
Ciclev10022066m.g Citrus clementina HOM05D003866 ORTHO05D004508 3.0e-40 169.5 220 45.0
Haze_04883 Corylus avellana HOM05D003866 ORTHO05D004508 3.0e-40 169.5 191 48.2
Peaxi162Scf00140g01011 Petunia axillaris HOM05D003866 ORTHO05D004508 3.0e-40 169.5 191 46.6
Actinidia24328 Actinidia chinensis HOM05D003866 ORTHO05D004508 3.9e-40 169.1 191 48.2
TAR365G0487 Trochodendron aralioides HOM05D003866 ORTHO05D004508 3.9e-40 169.1 191 47.1
TAR365G0990 Trochodendron aralioides HOM05D003866 ORTHO05D004508 3.9e-40 169.1 191 47.1
Dinv19723 Davidia involucrata HOM05D003866 ORTHO05D004508 5.1e-40 168.7 202 46.0
CARHR120140 Cardamine hirsuta HOM05D003866 ORTHO05D004508 6.6e-40 168.3 202 46.5
HanXRQChr04g0118161 Helianthus annuus HOM05D003866 ORTHO05D004508 6.6e-40 168.3 202 44.1
Cfa005958 Carpinus fangiana HOM05D003866 ORTHO05D004508 8.7e-40 167.9 191 48.2
ATR0706G042 Amborella trichopoda HOM05D003866 ORTHO05D004508 1.5e-39 167.2 202 45.0
CSS0038127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 1.5e-39 167.2 191 48.2
TWI14G1088 Tripterygium wilfordii HOM05D003866 ORTHO05D004508 1.5e-39 167.2 197 45.7
A03p26580 Brassica napus HOM05D003866 ORTHO05D004508 2.5e-39 166.4 202 46.5
AUR62022186 Chenopodium quinoa HOM05D003866 ORTHO05D004508 2.5e-39 166.4 202 46.0
Sopen11g008460 Solanum pennellii HOM05D003866 ORTHO05D004508 2.5e-39 166.4 202 45.0
PGSC0003DMG400027789 Solanum tuberosum HOM05D003866 ORTHO05D004508 2.5e-39 166.4 202 45.0
Migut.I00105 Erythranthe guttata HOM05D003866 ORTHO05D004508 3.3e-39 166.0 202 44.6
MD03G1282400 Malus domestica HOM05D003866 ORTHO05D004508 3.3e-39 166.0 191 48.7
C03p31840 Brassica napus HOM05D003866 ORTHO05D004508 5.6e-39 165.2 202 46.5
BolC3t15527H Brassica oleracea HOM05D003866 ORTHO05D004508 5.6e-39 165.2 202 46.0
AUR62031891 Chenopodium quinoa HOM05D003866 ORTHO05D004508 5.6e-39 165.2 202 46.0
Dinv33030 Davidia involucrata HOM05D003866 ORTHO05D004508 5.6e-39 165.2 202 45.5
SalBow2G1869 Salvia bowleyana HOM05D003866 ORTHO05D004508 5.6e-39 165.2 190 45.3
BcaC01g04944 Brassica carinata HOM05D003866 ORTHO05D004508 7.4e-39 164.9 202 46.0
Cpa.g.sc11.50 Carica papaya HOM05D003866 ORTHO05D004508 7.4e-39 164.9 224 42.9
Lsat_1_v5_gn_8_54720 Lactuca sativa HOM05D003866 ORTHO05D004508 7.4e-39 164.9 218 42.2
Lalb_Chr04g0259781 Lupinus albus HOM05D003866 ORTHO05D004508 7.4e-39 164.9 191 46.1
Solyc11g013460.2 Solanum lycopersicum HOM05D003866 ORTHO05D004508 7.4e-39 164.9 225 43.1
Thhalv10017190m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 9.6e-39 164.5 202 45.5
Lj1g0017340 Lotus japonicus HOM05D003866 ORTHO05D004508 9.6e-39 164.5 191 46.6
Nitab4.5_0004737g0020 Nicotiana tabacum HOM05D003866 ORTHO05D004508 9.6e-39 164.5 225 42.2
BraA03t11870Z Brassica rapa HOM05D003866 ORTHO05D004508 1.3e-38 164.1 202 46.0
TPR.G9596 Trifolium pratense HOM05D003866 ORTHO05D004508 1.3e-38 164.1 202 46.0
A07p18280 Brassica napus HOM05D003866 ORTHO05D004508 1.6e-38 163.7 202 46.0
Lj2A1190T61 Lonicera japonica HOM05D003866 ORTHO05D004508 1.6e-38 163.7 202 44.1
Medtr2g014120 Medicago truncatula HOM05D003866 ORTHO05D004508 1.6e-38 163.7 202 45.5
Medtr7g108540 Medicago truncatula HOM05D003866 ORTHO05D004508 1.6e-38 163.7 202 45.5
Prupe.8G257100 Prunus persica HOM05D003866 ORTHO05D004508 1.6e-38 163.7 191 46.1
arahy.Tifrunner.gnm1.ann1.44W6WI Arachis hypogaea HOM05D003866 ORTHO05D004508 2.1e-38 163.3 191 46.1
Thhalv10017203m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 2.1e-38 163.3 202 46.0
Lj1C0G2 Lonicera japonica HOM05D003866 ORTHO05D004508 2.1e-38 163.3 184 49.5
GSVIVG01027965001 Vitis vinifera HOM05D003866 ORTHO05D004508 2.1e-38 163.3 202 46.0
Atru.chr5.1203 Acer truncatum HOM05D003866 ORTHO05D004508 2.8e-38 162.9 220 43.2
HanXRQChr06g0163901 Helianthus annuus HOM05D003866 ORTHO05D004508 3.6e-38 162.5 218 40.4
MBI19_g41921_MAGBIO Magnolia biondii HOM05D003866 ORTHO05D004508 3.6e-38 162.5 220 42.7
SMO144G0118 Selaginella moellendorffii HOM05D003866 ORTHO05D004508 3.6e-38 162.5 221 42.5
BcaB01g03075 Brassica carinata HOM05D003866 ORTHO05D004508 4.8e-38 162.2 202 45.5
CiPaw.08G097800 Carya illinoinensis HOM05D003866 ORTHO05D004508 4.8e-38 162.2 191 47.1
Ca_09142_v3 Cicer arietinum L. HOM05D003866 ORTHO05D004508 4.8e-38 162.2 202 44.6
Nitab4.5_0000051g0210 Nicotiana tabacum HOM05D003866 ORTHO05D004508 4.8e-38 162.2 225 41.8
Hund18125 Selenicereus undatus HOM05D003866 ORTHO05D004508 4.8e-38 162.2 230 43.5
EL10Ac4g07959 Beta vulgaris HOM05D003866 ORTHO05D004508 6.2e-38 161.8 187 46.0
SGA_v2.0_scaffold1G00383 Striga asiatica HOM05D003866 ORTHO05D004508 6.2e-38 161.8 220 40.5
ECA236G1731 Erigeron canadensis HOM05D003866 ORTHO05D004508 8.1e-38 161.4 218 41.7
RhsimUnG0168700 Rhododendron simsii HOM05D003866 ORTHO05D004508 8.1e-38 161.4 191 46.6
PGSC0003DMG400027790 Solanum tuberosum HOM05D003866 ORTHO05D004508 8.1e-38 161.4 202 44.1
CsaV3_4G000530 Cucumis sativus L. HOM05D003866 ORTHO05D004508 1.1e-37 161.0 229 41.0
Sp4g10360 Schrenkiella parvula HOM05D003866 ORTHO05D004508 1.1e-37 161.0 202 45.0
Glyma.19G209400 Glycine max HOM05D003866 ORTHO05D004508 1.4e-37 160.6 217 42.9
Lj1A33G82 Lonicera japonica HOM05D003866 ORTHO05D004508 1.4e-37 160.6 221 44.3
Manes.13G006100 Manihot esculenta HOM05D003866 ORTHO05D004508 1.4e-37 160.6 223 44.4
arahy.Tifrunner.gnm1.ann1.AT77GA Arachis hypogaea HOM05D003866 ORTHO05D004508 1.8e-37 160.2 216 42.1
Manes.12G006300 Manihot esculenta HOM05D003866 ORTHO05D004508 2.4e-37 159.8 191 46.6
Os01g0360600 Oryza sativa ssp. japonica HOM05D003866 ORTHO05D004508 2.4e-37 159.8 199 44.2
Phvul.001G205200 Phaseolus vulgaris HOM05D003866 ORTHO05D004508 2.4e-37 159.8 191 45.0
CAN.G337.118 Capsicum annuum HOM05D003866 ORTHO05D004508 3.1e-37 159.5 202 43.6
CDE09G0414 Ceratophyllum demersum HOM05D003866 ORTHO05D004508 4.0e-37 159.1 197 44.7
Cc01_g20600 Coffea canephora HOM05D003866 ORTHO05D004508 4.0e-37 159.1 202 43.1
Oeu024509.1 Olea europaea HOM05D003866 ORTHO05D004508 4.0e-37 159.1 184 46.7
Psat3g022720 Pisum sativum HOM05D003866 ORTHO05D004508 4.0e-37 159.1 202 46.0
Sed0016300 Sechium edule HOM05D003866 ORTHO05D004508 4.0e-37 159.1 215 42.3
VMungo1383G2803 Vigna mungo HOM05D003866 ORTHO05D004508 4.0e-37 159.1 192 45.8
Cc01_g06400 Coffea canephora HOM05D003866 ORTHO05D004508 5.3e-37 158.7 202 43.1
Gohir.D12G010300 Gossypium hirsutum HOM05D003866 ORTHO05D004508 5.3e-37 158.7 225 44.4
MD11G1303900 Malus domestica HOM05D003866 ORTHO05D004508 6.9e-37 158.3 191 45.5
CSS0036127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 9.0e-37 157.9 218 43.6
Zm00001eb041190 Zea mays HOM05D003866 ORTHO05D004508 9.0e-37 157.9 191 44.0
Duzib133G0502 Durio zibethinus HOM05D003866 ORTHO05D004508 1.2e-36 157.5 223 42.2
BcaB02g10095 Brassica carinata HOM05D003866 ORTHO05D004508 1.5e-36 157.1 204 45.1
Prupe.6G179600 Prunus persica HOM05D003866 ORTHO05D004508 1.5e-36 157.1 191 45.0
RcHm_v2.0_Chr5g0006471 Rosa chinensis HOM05D003866 ORTHO05D004508 1.5e-36 157.1 189 45.5
RcHm_v2.0_Chr6g0293371 Rosa chinensis HOM05D003866 ORTHO05D004508 2.6e-36 156.4 189 45.5
Gorai.012G004500 Gossypium raimondii HOM05D003866 ORTHO05D004508 3.4e-36 156.0 225 42.7
Potri.010G206900 Populus trichocarpa HOM05D003866 ORTHO05D004508 5.8e-36 155.2 191 45.5
Sc03g0003200 Simmondsia chinensis HOM05D006805 ORTHO05D004508 5.8e-36 155.2 191 44.5
COL.COLO4_23391 Corchorus olitorius HOM05D003866 ORTHO05D004508 7.6e-36 154.8 225 42.7
Gorai.008G010300 Gossypium raimondii HOM05D003866 ORTHO05D004508 1.3e-35 154.1 225 43.6
FAN15G0670 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.7e-35 153.7 202 43.1
Gohir.A12G010200 Gossypium hirsutum HOM05D003866 ORTHO05D004508 1.7e-35 153.7 225 42.7
PGR031G3621 Punica granatum HOM05D003866 ORTHO05D004508 1.7e-35 153.7 238 40.3
FAN24G3471 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.2e-35 153.3 202 43.1
Glyma.03G212300 Glycine max HOM05D003866 ORTHO05D004508 2.9e-35 152.9 220 41.8
RcHm_v2.0_Chr7g0221651 Rosa chinensis HOM05D003866 ORTHO05D004508 2.9e-35 152.9 185 44.9
Sp4g10280 Schrenkiella parvula HOM05D003866 ORTHO05D004508 3.8e-35 152.5 197 42.6
FAN11G1587 Fragaria x ananassa HOM05D003866 ORTHO05D004508 6.4e-35 151.8 184 45.7
Gohir.D04G003400 Gossypium hirsutum HOM05D003866 ORTHO05D004508 6.4e-35 151.8 225 42.7
FvH4_2g25231 Fragaria vesca HOM05D003866 ORTHO05D004508 1.9e-34 150.2 202 42.1
FvH4_3g05411 Fragaria vesca HOM05D003866 ORTHO05D004508 1.9e-34 150.2 202 42.6
PSO210G0692 Papaver somniferum HOM05D003866 ORTHO05D004508 1.9e-34 150.2 203 41.9
PSO832G2724 Papaver somniferum HOM05D003866 ORTHO05D004508 2.4e-34 149.8 203 41.4
Sabra08G0038800 Salix brachista HOM05D003866 ORTHO05D004508 4.2e-34 149.1 202 43.6
FvH4_7g06070 Fragaria vesca HOM05D003866 ORTHO05D004508 9.3e-34 147.9 210 43.3
arahy.Tifrunner.gnm1.ann1.9DBC1D Arachis hypogaea HOM05D003866 ORTHO05D004508 4.6e-33 145.6 195 42.1
FAN27G2002 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.3e-32 144.1 202 42.1
SGA_v2.0_scaffold25G10945 Striga asiatica HOM05D003866 ORTHO05D004508 9.6e-31 137.9 182 42.9
FAN10G2101 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.1e-29 134.4 210 41.4
ClCG10G010790 Citrullus lanatus HOM05D003866 ORTHO05D004508 1.4e-29 134.0 273 33.0
Thecc.01G295900 Theobroma cacao HOM05D003866 ORTHO05D004508 6.9e-29 131.7 172 41.9
Gohir.A05G412600 Gossypium hirsutum HOM05D003866 ORTHO05D004508 2.0e-28 130.2 204 39.7
Sabra10G0159700 Salix brachista HOM05D003866 ORTHO05D002218 7.6e-28 128.3 162 45.1
Nn4g25856 Nelumbo nucifera HOM05D003866 ORTHO05D004508 1.7e-27 127.1 168 43.5
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 2.2e-27 126.7 211 38.4
Hund18126 Selenicereus undatus HOM05D003866 ORTHO05D004508 2.2e-27 126.7 187 40.6
AL8G17300 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 2.1e-25 120.2 214 38.3
RcHm_v2.0_Chr1g0334201 Rosa chinensis HOM05D003866 ORTHO05D004508 1.3e-24 117.5 147 42.9
RcHm_v2.0_Chr1g0333581 Rosa chinensis HOM05D003866 ORTHO05D004508 3.9e-24 115.9 188 37.8
Actinidia32233 Actinidia chinensis HOM05D003866 ORTHO05D004508 2.5e-23 113.2 140 44.3
Potri.008G053601 Populus trichocarpa HOM05D003866 ORTHO05D004508 7.4e-23 111.7 132 46.2
FAN25G0878 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.4e-21 106.7 144 41.0
FAN20G0831 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.2e-20 104.4 124 44.4
MD12G1063200 Malus domestica HOM05D003866 ORTHO05D004508 2.6e-20 103.2 144 41.0
QL12p026964 Quercus lobata HOM05D003866 ORTHO05D004508 5.5e-18 95.5 89 50.6
PRCOL_00003268 Prasinoderma coloniale HOM05D003001 ORTHO05D003494 7.2e-18 95.1 187 36.9
HPP92_010697 Vanilla planifolia HOM05D001483 ORTHO05D001463 3.6e-17 92.8 124 40.3
SEGI_13628 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 6.1e-17 92.0 84 53.6
ClCG10G010800 Citrullus lanatus HOM05D003866 ORTHO05D004508 3.0e-16 89.7 84 51.2
BcaC02g10888 Brassica carinata HOM05D003866 ORTHO05D004508 1.1e-15 87.8 81 53.1
Carub.0001s3498 Capsella rubella HOM05D003866 ORTHO05D004508 1.9e-15 87.0 128 40.6
BraA07t29544Z Brassica rapa HOM05D003866 ORTHO05D004508 1.6e-14 84.0 90 50.0
SHI02446 Sapria himalayana HOM05D003866 ORTHO05D004508 1.6e-14 84.0 85 52.9
Oeu047454.1 Olea europaea HOM05D003866 ORTHO05D004508 2.2e-14 83.6 84 48.8
BolC4t23901H Brassica oleracea HOM05D003866 ORTHO05D004508 3.7e-14 82.8 97 47.4
CAN.G174.11 Capsicum annuum HOM05D003866 ORTHO05D004508 1.1e-13 81.3 84 48.8
BcaC02g10889 Brassica carinata HOM05D003866 ORTHO05D004508 1.4e-13 80.9 104 45.2
C04p24060 Brassica napus HOM05D003866 ORTHO05D004508 1.8e-13 80.5 94 46.8
Psat5g098240 Pisum sativum HOM05D001063 ORTHO05D000986 1.8e-13 80.5 104 43.3
MSTRG.21619 Avicennia marina HOM05D003866 ORTHO05D004508 3.1e-13 79.7 82 48.8
Zm00001eb341290 Zea mays HOM05D003866 ORTHO05D004508 3.1e-13 79.7 97 44.3
CAN.G255.6 Capsicum annuum HOM05D003866 ORTHO05D004508 1.2e-12 77.8 76 52.6
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 2.0e-12 77.0 110 38.2
EL10Ac1g00209 Beta vulgaris HOM05D003866 ORTHO05D004508 2.6e-12 76.6 112 39.3
Cre13.g586250 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 3.4e-12 76.3 187 33.7
MCO11G607 Micromonas commoda HOM05D003866 ORTHO05D004508 2.9e-11 73.2 201 33.3
Sc03g0003210 Simmondsia chinensis HOM05D003866 ORTHO05D004508 3.8e-11 72.8 93 44.1
arahy.Tifrunner.gnm1.ann1.ZE4P1V Arachis hypogaea HOM05D003866 ORTHO05D004508 3.2e-10 69.7 110 37.3
RcHm_v2.0_Chr4g0419041 Rosa chinensis HOM05D003866 ORTHO05D004508 4.2e-10 69.3 71 45.1
FAN06G0461 Fragaria x ananassa HOM05D003866 ORTHO05D004508 3.6e-09 66.2 64 50.0
DCAR_024210 Daucus carota HOM05D003866 ORTHO05D004508 7.9e-09 65.1 59 55.9
QL12p026975 Quercus lobata HOM05D003866 ORTHO05D004508 1.4e-08 64.3 99 42.4
GSVIVG01010954001 Vitis vinifera HOM05D003866 ORTHO05D004508 1.8e-08 63.9 70 51.4
FvH4_3g05410 Fragaria vesca HOM05D003866 ORTHO05D004508 3.0e-08 63.2 84 39.3
arahy.Tifrunner.gnm1.ann1.86SF76 Arachis hypogaea HOM05D003866 ORTHO05D004508 6.7e-08 62.0 81 40.7


User provided reference genes

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