Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre10.g433200 Chlamydomonas reinhardtii HOM05D011917 ORTHO05D008140 0.0e+00 1270.4 642 100.0
Cre10.g433250 Chlamydomonas reinhardtii HOM05D011917 ORTHO05D008140 0.0e+00 1270.4 642 100.0
Cre10.g442800 Chlamydomonas reinhardtii HOM05D011917 ORTHO05D008140 1.6e-304 1048.9 627 86.4
Cre10.g442600 Chlamydomonas reinhardtii HOM05D011917 ORTHO05D008140 5.5e-297 1023.8 617 84.3
Pp3c12_11660 Physcomitrium patens HOM05D011917 ORTHO05D008140 9.9e-121 438.3 606 42.4
AagrBONN_evm.TU.Sc2ySwM_368.911 Anthoceros agrestis HOM05D011917 ORTHO05D008140 4.1e-119 433.0 618 40.8
MCO14G576 Micromonas commoda HOM05D011917 ORTHO05D008140 2.4e-114 417.2 581 41.1
Pp3c3_22020 Physcomitrium patens HOM05D011917 ORTHO05D008140 2.6e-113 413.7 565 42.3
Mapoly0014s0107 Marchantia polymorpha HOM05D011917 ORTHO05D008140 3.4e-113 413.3 602 40.9
MCO14G577 Micromonas commoda HOM05D011917 ORTHO05D008140 3.8e-112 409.8 566 41.5
PRCOL_00006898 Prasinoderma coloniale HOM05D011917 ORTHO05D008140 1.4e-111 407.9 566 41.9
SEGI_03574 Sequoiadendron giganteum HOM05D011917 ORTHO05D008140 7.8e-110 402.1 681 37.2
Cfa022348 Carpinus fangiana HOM05D011917 ORTHO05D008140 1.6e-94 351.3 537 39.3
CBR_g17667 Chara braunii HOM05D011917 ORTHO05D008140 1.4e-90 338.2 589 35.8
Ca_29155_v3 Cicer arietinum L. HOM05D011917 ORTHO05D008140 1.3e-16 92.4 343 28.3
Duzib187G1499 Durio zibethinus HOM05D000323 ORTHO05D000201 2.3e-08 65.1 575 21.2
Actinidia10207 Actinidia chinensis HOM05D000323 ORTHO05D000201 3.9e-08 64.3 217 27.6
QL06p035856 Quercus lobata HOM05D000323 ORTHO05D000201 5.1e-08 63.9 512 21.7
Ciclev10024972m.g Citrus clementina HOM05D000323 ORTHO05D000201 8.6e-08 63.2 575 21.6
Cfa006875 Carpinus fangiana HOM05D000323 ORTHO05D000201 1.1e-07 62.8 575 21.0
TPR.G15585 Trifolium pratense HOM05D000323 ORTHO05D000201 1.5e-07 62.4 481 22.2
Solyc10g049280.2 Solanum lycopersicum HOM05D000323 ORTHO05D000201 1.9e-07 62.0 544 21.5
Sopen10g020450 Solanum pennellii HOM05D000323 ORTHO05D000201 1.9e-07 62.0 543 21.7
Pp3s46_310 Physcomitrium patens HOM05D000323 ORTHO05D034614 2.5e-07 61.6 255 26.7
MSTRG.15684 Avicennia marina HOM05D000323 ORTHO05D000201 3.3e-07 61.2 570 21.2
Carub.0007s0217 Capsella rubella HOM05D000323 ORTHO05D000201 3.3e-07 61.2 555 21.1
Lalb_Chr02g0144941 Lupinus albus HOM05D000323 ORTHO05D000201 3.3e-07 61.2 169 30.8
PGR102G3063 Punica granatum HOM05D000323 ORTHO05D000201 5.6e-07 60.5 567 21.3
Rhsim10G0173300 Rhododendron simsii HOM05D000323 ORTHO05D000201 5.6e-07 60.5 571 21.5
PGSC0003DMG400025837 Solanum tuberosum HOM05D000323 ORTHO05D000201 5.6e-07 60.5 546 23.3
CiPaw.08G140600 Carya illinoinensis HOM05D000323 ORTHO05D000201 7.3e-07 60.1 571 20.7
Sed0008457 Sechium edule HOM05D000323 ORTHO05D000201 7.3e-07 60.1 510 21.8
Psat7g191080 Pisum sativum HOM05D000323 ORTHO05D000201 1.2e-06 59.3 489 23.1
Solyc11g066900.2 Solanum lycopersicum HOM05D000323 ORTHO05D000201 1.2e-06 59.3 476 20.0
ATR0820G281 Amborella trichopoda HOM05D000323 ORTHO05D000201 1.6e-06 58.9 544 21.7
Lsat_1_v5_gn_6_41321 Lactuca sativa HOM05D000323 ORTHO05D000201 1.6e-06 58.9 557 21.5
Sabra07G0008900 Salix brachista HOM05D000323 ORTHO05D000201 1.6e-06 58.9 506 20.2
AL7G12590 Arabidopsis lyrata HOM05D000323 ORTHO05D000201 2.1e-06 58.5 507 21.3
AT4G38050 Arabidopsis thaliana HOM05D000323 ORTHO05D000201 2.1e-06 58.5 489 21.5
CSS0043416 Camellia sinensis var. sinensis HOM05D000323 ORTHO05D000201 2.1e-06 58.5 157 28.7
Ca_22701_v3 Cicer arietinum L. HOM05D000323 ORTHO05D000201 2.1e-06 58.5 227 24.2
PGSC0003DMG400003235 Solanum tuberosum HOM05D000323 ORTHO05D000201 2.1e-06 58.5 541 21.6
Lsat_1_v5_gn_9_67321 Lactuca sativa HOM05D000323 ORTHO05D000201 2.8e-06 58.2 222 25.2
Lj2g0003522 Lotus japonicus HOM05D000323 ORTHO05D000201 2.8e-06 58.2 541 21.6
Manes.13G100700 Manihot esculenta HOM05D000323 ORTHO05D000201 2.8e-06 58.2 482 21.0
HanXRQChr07g0188781 Helianthus annuus HOM05D000323 ORTHO05D000201 3.6e-06 57.8 513 22.0
Lj9A328T38 Lonicera japonica HOM05D000323 ORTHO05D000201 3.6e-06 57.8 207 30.0
Os09g0381100 Oryza sativa ssp. japonica HOM05D000323 ORTHO05D000201 3.6e-06 57.8 546 23.6
CSS0030676 Camellia sinensis var. sinensis HOM05D000323 ORTHO05D000201 4.7e-06 57.4 160 28.1
Carub.0008s0989 Capsella rubella HOM05D000323 ORTHO05D000201 4.7e-06 57.4 535 22.2
Medtr4g055290 Medicago truncatula HOM05D000323 ORTHO05D000201 4.7e-06 57.4 486 22.4
Potri.007G011400 Populus trichocarpa HOM05D000323 ORTHO05D000201 4.7e-06 57.4 506 20.2
RcHm_v2.0_Chr2g0111121 Rosa chinensis HOM05D000323 ORTHO05D000201 4.7e-06 57.4 548 21.4
TPR.G8011 Trifolium pratense HOM05D000323 ORTHO05D000201 4.7e-06 57.4 560 21.2
BcaB08g35369 Brassica carinata HOM05D000323 ORTHO05D000201 6.2e-06 57.0 536 22.6
A01p01040 Brassica napus HOM05D000323 ORTHO05D000201 6.2e-06 57.0 150 28.0
BraA01t00102Z Brassica rapa HOM05D000323 ORTHO05D000201 6.2e-06 57.0 150 28.0
SEGI_34270 Sequoiadendron giganteum HOM05D000323 ORTHO05D000201 6.2e-06 57.0 157 29.3
Sopen11g026610 Solanum pennellii HOM05D000323 ORTHO05D000201 6.2e-06 57.0 536 19.8
vmacro13010 Vaccinium macrocarpon HOM05D000323 ORTHO05D000201 6.2e-06 57.0 157 28.7
VMungo1080G1197 Vigna mungo HOM05D000323 ORTHO05D000201 6.2e-06 57.0 160 26.9
AUR62027016 Chenopodium quinoa HOM05D000323 ORTHO05D000201 8.1e-06 56.6 160 30.0
Ca_01676_v3 Cicer arietinum L. HOM05D000323 ORTHO05D000201 8.1e-06 56.6 481 21.2
Thhalv10024538m.g Eutrema salsugineum HOM05D000323 ORTHO05D000201 8.1e-06 56.6 507 20.9
Gohir.D11G053700 Gossypium hirsutum HOM05D000323 ORTHO05D000201 8.1e-06 56.6 497 20.9
MBI16_g27572_MAGBIO Magnolia biondii HOM05D000323 ORTHO05D000201 8.1e-06 56.6 154 29.2
Pp3c13_10930 Physcomitrium patens HOM05D000323 ORTHO05D000201 8.1e-06 56.6 162 25.3
Potri.009G086800 Populus trichocarpa HOM05D000323 ORTHO05D000201 8.1e-06 56.6 205 27.3


User provided reference genes

Program Settings