Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre10.g432500 Chlamydomonas reinhardtii HOM05D004602 ORTHO05D005906 0.0e+00 2795.0 1638 100.0
Manes.08G057600 Manihot esculenta HOM05D004602 ORTHO05D005906 2.4e-70 272.3 1358 24.4
Lj5g0012838 Lotus japonicus HOM05D004602 ORTHO05D005906 3.8e-68 265.0 1358 24.8
ATR0745G001 Amborella trichopoda HOM05D004602 ORTHO05D005906 1.5e-67 263.1 1347 24.4
Eucgr.A02262 Eucalyptus grandis HOM05D004602 ORTHO05D005906 4.7e-66 258.1 1245 24.4
THA.LOC104824412 Tarenaya hassleriana HOM05D004602 ORTHO05D005906 6.1e-66 257.7 1101 25.2
Thecc.05G139800 Theobroma cacao HOM05D004602 ORTHO05D005906 1.4e-65 256.5 1190 24.9
Ca_26637_v3 Cicer arietinum L. HOM05D004602 ORTHO05D005906 4.0e-65 255.0 1360 23.8
Sabra06G0028200 Salix brachista HOM05D004602 ORTHO05D005906 4.0e-65 255.0 1078 26.0
Prupe.7G042500 Prunus persica HOM05D004602 ORTHO05D005906 8.8e-65 253.8 1314 23.4
Lj1A1104G73 Lonicera japonica HOM05D004602 ORTHO05D005906 1.1e-64 253.4 1338 24.3
Glyma.02G157700 Glycine max HOM05D004602 ORTHO05D005906 2.0e-64 252.7 1192 24.7
Peaxi162Scf01378g00118 Petunia axillaris HOM05D004602 ORTHO05D005906 2.6e-64 252.3 1193 25.1
Phvul.007G247800 Phaseolus vulgaris HOM05D004602 ORTHO05D005906 2.6e-64 252.3 1186 24.5
A09p49980 Brassica napus HOM05D004602 ORTHO05D005906 3.3e-64 251.9 1243 24.7
BraA09t40448Z Brassica rapa HOM05D004602 ORTHO05D005906 3.3e-64 251.9 1243 24.7
FAN14G4483 Fragaria x ananassa HOM05D004602 ORTHO05D005906 5.7e-64 251.1 1315 23.7
Potri.006G041500 Populus trichocarpa HOM05D004602 ORTHO05D005906 5.7e-64 251.1 1318 23.4
Dinv08512 Davidia involucrata HOM05D004602 ORTHO05D005906 7.4e-64 250.8 1115 25.0
PGR031G1006 Punica granatum HOM05D004602 ORTHO05D005906 7.4e-64 250.8 1179 25.8
ClCG10G016070 Citrullus lanatus HOM05D004602 ORTHO05D005906 9.7e-64 250.4 1263 24.1
EL10Ac3g07209 Beta vulgaris HOM05D004602 ORTHO05D005906 1.3e-63 250.0 1262 24.4
HanXRQChr06g0176911 Helianthus annuus HOM05D004602 ORTHO05D005906 1.3e-63 250.0 1239 24.5
C08p32390 Brassica napus HOM05D004602 ORTHO05D005906 1.7e-63 249.6 1248 24.6
RcHm_v2.0_Chr2g0125151 Rosa chinensis HOM05D004602 ORTHO05D005906 1.7e-63 249.6 1345 23.9
QL07p008767 Quercus lobata HOM05D004602 ORTHO05D005906 2.2e-63 249.2 1322 24.4
Cc06_g18890 Coffea canephora HOM05D004602 ORTHO05D005906 3.7e-63 248.4 1175 24.5
Nn2g14888 Nelumbo nucifera HOM05D004602 ORTHO05D005906 4.8e-63 248.1 1188 24.0
Medtr1g051230 Medicago truncatula HOM05D004602 ORTHO05D005906 6.3e-63 247.7 1309 24.0
BraA04t16055Z Brassica rapa HOM05D004602 ORTHO05D005906 8.2e-63 247.3 1246 23.8
CAN.G641.74 Capsicum annuum HOM05D004602 ORTHO05D005906 8.2e-63 247.3 1190 24.8
Lalb_Chr02g0156531 Lupinus albus HOM05D004602 ORTHO05D005906 1.1e-62 246.9 1338 24.6
Pp3c3_32300 Physcomitrium patens HOM05D004602 ORTHO05D005906 1.1e-62 246.9 1390 23.7
Sed0020412 Sechium edule HOM05D004602 ORTHO05D005906 1.4e-62 246.5 1101 25.3
FvH4_6g25220 Fragaria vesca HOM05D004602 ORTHO05D005906 1.8e-62 246.1 1318 23.7
TPR.G19659 Trifolium pratense HOM05D004602 ORTHO05D005906 1.8e-62 246.1 1364 23.8
A04p03790 Brassica napus HOM05D004602 ORTHO05D005906 2.4e-62 245.7 1246 23.8
Haze_19715 Corylus avellana HOM05D004602 ORTHO05D005906 2.4e-62 245.7 1116 24.9
VMungo0720G1740 Vigna mungo HOM05D004602 ORTHO05D005906 2.4e-62 245.7 1248 24.1
MELO3C009773.2 Cucumis melo HOM05D004602 ORTHO05D005906 3.1e-62 245.4 1267 24.8
TAR636G3632 Trochodendron aralioides HOM05D004602 ORTHO05D005906 7.0e-62 244.2 1071 25.3
Psat6g123240 Pisum sativum HOM05D004602 ORTHO05D005906 9.1e-62 243.8 1361 23.7
BolC8t50853H Brassica oleracea HOM05D004602 ORTHO05D005906 1.2e-61 243.4 1196 24.5
AL5G38540 Arabidopsis lyrata HOM05D004602 ORTHO05D005906 1.6e-61 243.0 1106 24.1
Ah.04g151080 Amaranthus hybridus HOM05D004602 ORTHO05D005906 2.6e-61 242.3 1069 25.1
CSS0046388 Camellia sinensis var. sinensis HOM05D004602 ORTHO05D005906 2.6e-61 242.3 1168 24.6
Thhalv10005748m.g Eutrema salsugineum HOM05D004602 ORTHO05D005906 2.6e-61 242.3 1067 24.8
Sc19g0008270 Simmondsia chinensis HOM05D004602 ORTHO05D005906 2.6e-61 242.3 1094 25.1
CARHR167250 Cardamine hirsuta HOM05D004602 ORTHO05D005906 5.9e-61 241.1 1194 24.0
Cpa.g.sc5.207 Carica papaya HOM05D004602 ORTHO05D005906 5.9e-61 241.1 1366 23.9
SGA_v2.0_scaffold105G30304 Striga asiatica HOM05D004602 ORTHO05D005906 5.9e-61 241.1 1330 23.5
Sopen10g030360 Solanum pennellii HOM05D004602 ORTHO05D005906 7.7e-61 240.7 1194 25.5
BolC4t25093H Brassica oleracea HOM05D004602 ORTHO05D005906 1.0e-60 240.4 1100 24.5
Solyc10g079730.3 Solanum lycopersicum HOM05D004602 ORTHO05D005906 1.0e-60 240.4 1194 25.2
CSS0013313 Camellia sinensis var. sinensis HOM05D004602 ORTHO05D005906 1.3e-60 240.0 1358 23.5
Sp5g05520 Schrenkiella parvula HOM05D004602 ORTHO05D005906 1.3e-60 240.0 1082 24.8
BcaC02g09900 Brassica carinata HOM05D004602 ORTHO05D005906 1.7e-60 239.6 1100 24.5
C04p35390 Brassica napus HOM05D004602 ORTHO05D005906 1.7e-60 239.6 1100 24.5
Carub.0005s2386 Capsella rubella HOM05D004602 ORTHO05D005906 2.2e-60 239.2 1106 24.7
PSO339G0660 Papaver somniferum HOM05D004602 ORTHO05D005906 2.2e-60 239.2 1173 24.0
Migut.J01674 Erythranthe guttata HOM05D004602 ORTHO05D005906 2.9e-60 238.8 1187 24.0
Ciclev10018515m.g Citrus clementina HOM05D004602 ORTHO05D005906 3.8e-60 238.4 1251 23.7
Os07g0659500 Oryza sativa ssp. japonica HOM05D004602 ORTHO05D005906 3.8e-60 238.4 1229 24.4
Actinidia38152 Actinidia chinensis HOM05D004602 ORTHO05D005906 5.0e-60 238.0 1364 23.5
Gohir.A11G308300 Gossypium hirsutum HOM05D004602 ORTHO05D005906 5.0e-60 238.0 1346 22.9
AT3G57060 Arabidopsis thaliana HOM05D004602 ORTHO05D005906 6.5e-60 237.7 1097 24.2
MSTRG.19816 Avicennia marina HOM05D004602 ORTHO05D005906 6.5e-60 237.7 1249 24.2
PSO384G2446 Papaver somniferum HOM05D004602 ORTHO05D005906 6.5e-60 237.7 1308 23.5
TWI53G0771 Tripterygium wilfordii HOM05D004602 ORTHO05D005906 6.5e-60 237.7 1334 23.4
vmacro09030 Vaccinium macrocarpon HOM05D004602 ORTHO05D005906 6.5e-60 237.7 1360 23.2
AUR62040826 Chenopodium quinoa HOM05D004602 ORTHO05D005906 1.1e-59 236.9 1114 24.5
MCO05G584 Micromonas commoda HOM05D004602 ORTHO05D005906 1.1e-59 236.9 1387 24.4
ECA236G3238 Erigeron canadensis HOM05D004602 ORTHO05D005906 1.5e-59 236.5 1109 25.0
PGSC0003DMG400029835 Solanum tuberosum HOM05D004602 ORTHO05D005906 1.5e-59 236.5 1095 25.8
Lsat_1_v5_gn_8_82681 Lactuca sativa HOM05D004602 ORTHO05D005906 1.9e-59 236.1 1101 24.7
AUR62030338 Chenopodium quinoa HOM05D004602 ORTHO05D005906 5.5e-59 234.6 1114 24.2
Duzib106G0250 Durio zibethinus HOM05D004602 ORTHO05D005906 5.5e-59 234.6 1190 24.2
Gorai.007G353800 Gossypium raimondii HOM05D004602 ORTHO05D005906 5.5e-59 234.6 1348 22.6
Aqoxy2G00344 Aquilegia oxysepala HOM05D004602 ORTHO05D005906 7.2e-59 234.2 1208 23.7
Zm00001eb329790 Zea mays HOM05D004602 ORTHO05D005906 7.2e-59 234.2 1228 23.9
Gohir.D11G323700 Gossypium hirsutum HOM05D004602 ORTHO05D005906 1.6e-58 233.0 1120 23.9
MD14G1099800 Malus domestica HOM05D004602 ORTHO05D005906 2.1e-58 232.6 1333 22.8
SEGI_37933 Sequoiadendron giganteum HOM05D004602 ORTHO05D005906 1.4e-57 229.9 1373 22.7
DCAR_016876 Daucus carota HOM05D004602 ORTHO05D005906 1.2e-56 226.9 1341 23.4
Atru.chr1.1489 Acer truncatum HOM05D004602 ORTHO05D005906 1.5e-56 226.5 1046 24.7
COL.COLO4_37951 Corchorus olitorius HOM05D004602 ORTHO05D005906 1.5e-56 226.5 1185 24.1
arahy.Tifrunner.gnm1.ann1.0AC10P Arachis hypogaea HOM05D004602 ORTHO05D005906 4.4e-56 224.9 1357 23.8
AagrBONN_evm.TU.Sc2ySwM_362.2771 Anthoceros agrestis HOM05D004602 ORTHO05D005906 5.7e-56 224.6 1380 22.9
BcaC07g40081 Brassica carinata HOM05D004602 ORTHO05D005906 7.5e-56 224.2 1077 24.6
Aa31LG10G11980 Aethionema arabicum HOM05D004602 ORTHO05D005906 1.3e-55 223.4 1333 23.0
BcaNung07305 Brassica carinata HOM05D004602 ORTHO05D005906 2.2e-55 222.6 1032 25.4
FAN09G3373 Fragaria x ananassa HOM05D004602 ORTHO05D005906 2.8e-55 222.2 1316 23.3
arahy.Tifrunner.gnm1.ann1.F5KNV4 Arachis hypogaea HOM05D004602 ORTHO05D005906 6.3e-55 221.1 1359 23.6
CsaV3_3G040360 Cucumis sativus L. HOM05D004602 ORTHO05D005906 3.1e-54 218.8 1252 24.0
CiPaw.09G045900 Carya illinoinensis HOM05D004602 ORTHO05D005906 7.0e-54 217.6 1092 23.9
GSVIVG01033598001 Vitis vinifera HOM05D004602 ORTHO05D005906 2.0e-53 216.1 1202 23.0
CBR_g63081 Chara braunii HOM05D004602 ORTHO05D005906 4.5e-53 214.9 1321 23.8
Nitab4.5_0001364g0050 Nicotiana tabacum HOM05D004602 ORTHO05D005906 5.9e-53 214.5 1204 24.3
Hund24628 Selenicereus undatus HOM05D004602 ORTHO05D005906 1.1e-51 210.3 1078 24.1
Nitab4.5_0000571g0090 Nicotiana tabacum HOM05D004602 ORTHO05D005906 1.5e-51 209.9 1180 24.4
SHI28280 Sapria himalayana HOM05D004602 ORTHO05D005906 2.5e-51 209.1 1101 24.2
BcaC07g40050 Brassica carinata HOM05D004602 ORTHO05D005906 7.2e-51 207.6 1382 22.8
SMO351G0392 Selaginella moellendorffii HOM05D004602 ORTHO05D005906 1.4e-49 203.4 1322 23.1
Mapoly0022s0167 Marchantia polymorpha HOM05D004602 ORTHO05D005906 4.0e-49 201.8 1258 23.0
Pp3c12_12160 Physcomitrium patens HOM05D004602 ORTHO05D005906 1.2e-48 200.3 1394 21.4
Oeu029496.3 Olea europaea HOM05D004602 ORTHO05D005906 1.5e-48 199.9 950 25.1
Peaxi162Scf00970g00168 Petunia axillaris HOM05D004602 ORTHO05D005906 9.8e-48 197.2 1180 23.4
PRCOL_00006547 Prasinoderma coloniale HOM05D004602 ORTHO05D005906 8.3e-47 194.1 868 25.3
HPP92_025012 Vanilla planifolia HOM05D004602 ORTHO05D005906 7.0e-46 191.0 1108 23.6
Rhsim04G0110600 Rhododendron simsii HOM05D004602 ORTHO05D005906 1.2e-45 190.3 1355 22.4
unitig_21.g20921 Utricularia gibba HOM05D004602 ORTHO05D005906 1.6e-45 189.9 1321 22.2
CANSAT56G2079 Cannabis sativa HOM05D004602 ORTHO05D005906 5.0e-44 184.9 771 25.8
FAN02G3171 Fragaria x ananassa HOM05D004602 ORTHO05D005906 1.2e-42 180.3 857 26.1
COL.COLO4_37953 Corchorus olitorius HOM05D004602 ORTHO05D005906 3.6e-26 125.6 520 24.8
MBI13_g01621_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 9.5e-19 100.9 331 28.7
Haze_26650 Corylus avellana HOM05D004602 ORTHO05D005906 2.1e-18 99.8 259 27.0
Cfa024947 Carpinus fangiana HOM05D004602 ORTHO05D005906 5.8e-16 91.7 875 21.1
SalBow8G3517 Salvia bowleyana HOM05D004602 ORTHO05D005906 4.9e-07 62.0 78 35.9
SalBow8G5198 Salvia bowleyana HOM05D004602 ORTHO05D005906 4.9e-07 62.0 78 35.9
SalBow8G5420 Salvia bowleyana HOM05D004602 ORTHO05D005906 4.9e-07 62.0 78 35.9
CDE04G0055 Ceratophyllum demersum HOM05D004602 ORTHO05D005906 1.1e-06 60.8 75 37.3
Hma1.2p1_0682F.1_g202500 Hydrangea macrophylla HOM05D004602 ORTHO05D005906 2.4e-06 59.7 78 35.9


User provided reference genes

Program Settings