Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre10.g432100 Chlamydomonas reinhardtii HOM05D006087 ORTHO05D007479 1.4e-75 286.2 145 100.0
MELO3C010741.2 Cucumis melo HOM05D006087 ORTHO05D007479 1.3e-12 77.0 88 44.3
Aa31LG9G13330 Aethionema arabicum HOM05D006087 ORTHO05D007479 3.8e-12 75.5 88 44.3
A06p47950 Brassica napus HOM05D006087 ORTHO05D007479 6.5e-12 74.7 88 40.9
C07p25860 Brassica napus HOM05D006087 ORTHO05D007479 6.5e-12 74.7 88 40.9
BolC7t43103H Brassica oleracea HOM05D006087 ORTHO05D007479 6.5e-12 74.7 88 40.9
BraA06t27665Z Brassica rapa HOM05D006087 ORTHO05D007479 6.5e-12 74.7 88 40.9
A09p20220 Brassica napus HOM05D006087 ORTHO05D007479 8.5e-12 74.3 88 39.8
Sp2g08050 Schrenkiella parvula HOM05D006087 ORTHO05D007479 1.1e-11 73.9 88 40.9
MELO3C011864.2 Cucumis melo HOM05D006087 ORTHO05D007479 1.4e-11 73.6 86 45.3
BcaC04g21941 Brassica carinata HOM05D006087 ORTHO05D007479 2.5e-11 72.8 88 39.8
C09p25630 Brassica napus HOM05D006087 ORTHO05D007479 2.5e-11 72.8 88 39.8
BolC9t55466H Brassica oleracea HOM05D006087 ORTHO05D007479 2.5e-11 72.8 88 39.8
ECA234G0111 Erigeron canadensis HOM05D006087 ORTHO05D007479 2.5e-11 72.8 89 40.4
Mapoly0062s0032 Marchantia polymorpha HOM05D006087 ORTHO05D007479 2.5e-11 72.8 65 50.8
EL10Ac6g13503 Beta vulgaris HOM05D006087 ORTHO05D007479 3.2e-11 72.4 88 43.2
BcaB07g31021 Brassica carinata HOM05D006087 ORTHO05D007479 4.2e-11 72.0 88 38.6
BraA09t37633Z Brassica rapa HOM05D006087 ORTHO05D007479 5.5e-11 71.6 88 38.6
CiPaw.05G109600 Carya illinoinensis HOM05D006087 ORTHO05D007479 5.5e-11 71.6 85 41.2
CsaV3_5G030260 Cucumis sativus L. HOM05D006087 ORTHO05D007479 7.2e-11 71.2 86 44.2
FAN07G1634 Fragaria x ananassa HOM05D006087 ORTHO05D007479 7.2e-11 71.2 50 60.0
FAN12G1341 Fragaria x ananassa HOM05D006087 ORTHO05D007479 7.2e-11 71.2 50 60.0
FAN12G1854 Fragaria x ananassa HOM05D006087 ORTHO05D007479 7.2e-11 71.2 50 60.0
FAN17G2012 Fragaria x ananassa HOM05D006087 ORTHO05D007479 7.2e-11 71.2 50 60.0
FAN22G0702 Fragaria x ananassa HOM05D006087 ORTHO05D007479 7.2e-11 71.2 50 60.0
Gohir.D12G152800 Gossypium hirsutum HOM05D006087 ORTHO05D007479 7.2e-11 71.2 52 55.8
Gorai.008G165300 Gossypium raimondii HOM05D006087 ORTHO05D007479 7.2e-11 71.2 52 55.8
THA.LOC104812595 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 7.2e-11 71.2 88 38.6
Ah.02g130900 Amaranthus hybridus HOM05D006087 ORTHO05D007479 9.4e-11 70.9 88 42.0
CDE02G3899 Ceratophyllum demersum HOM05D006087 ORTHO05D007479 9.4e-11 70.9 87 42.5
HanXRQChr10g0310621 Helianthus annuus HOM05D006087 ORTHO05D007479 9.4e-11 70.9 88 39.8
Lsat_1_v5_gn_4_3481 Lactuca sativa HOM05D006087 ORTHO05D007479 9.4e-11 70.9 88 39.8
Lj4g0011842 Lotus japonicus HOM05D006087 ORTHO05D007479 9.4e-11 70.9 88 42.0
Pp3c21_520 Physcomitrium patens HOM05D006087 ORTHO05D007479 9.4e-11 70.9 88 39.8
Duzib248G0070 Durio zibethinus HOM05D006087 ORTHO05D007479 1.2e-10 70.5 88 39.8
Phvul.001G262000 Phaseolus vulgaris HOM05D006087 ORTHO05D007479 1.2e-10 70.5 85 43.5
Atru.chr11.2326 Acer truncatum HOM05D006087 ORTHO05D007479 1.6e-10 70.1 88 40.9
Ah.03g136140 Amaranthus hybridus HOM05D006087 ORTHO05D007479 1.6e-10 70.1 50 60.0
Glyma.11G250700 Glycine max HOM05D006087 ORTHO05D007479 2.1e-10 69.7 85 42.4
Glyma.18G006400 Glycine max HOM05D006087 ORTHO05D007479 2.1e-10 69.7 85 42.4
MD16G1119600 Malus domestica HOM05D006087 ORTHO05D007479 2.1e-10 69.7 50 58.0
RcHm_v2.0_Chr4g0430231 Rosa chinensis HOM05D006087 ORTHO05D007479 2.1e-10 69.7 50 58.0
AL8G17230 Arabidopsis lyrata HOM05D006087 ORTHO05D007479 2.7e-10 69.3 85 41.2
Carub.0008s0544 Capsella rubella HOM05D006087 ORTHO05D007479 2.7e-10 69.3 85 40.0
Lalb_Chr12g0206161 Lupinus albus HOM05D006087 ORTHO05D007479 3.6e-10 68.9 88 40.9
Pp3c22_5660 Physcomitrium patens HOM05D006087 ORTHO05D007479 3.6e-10 68.9 90 40.0
Ciclev10033174m.g Citrus clementina HOM05D006087 ORTHO05D007479 4.6e-10 68.6 88 40.9
Manes.12G011100 Manihot esculenta HOM05D006087 ORTHO05D007479 4.6e-10 68.6 88 40.9
TWI18G0911 Tripterygium wilfordii HOM05D006087 ORTHO05D007479 4.6e-10 68.6 88 39.8
TAR374G1631 Trochodendron aralioides HOM05D006087 ORTHO05D007479 4.6e-10 68.6 88 40.9
Zm00001eb241730 Zea mays HOM05D006087 ORTHO05D007479 4.6e-10 68.6 77 46.8
Actinidia20712 Actinidia chinensis HOM05D006087 ORTHO05D007479 6.1e-10 68.2 88 37.5
Potri.001G056601 Populus trichocarpa HOM05D006087 ORTHO05D007479 6.1e-10 68.2 88 39.8
TWI75G0102 Tripterygium wilfordii HOM05D006087 ORTHO05D007479 7.9e-10 67.8 88 38.6
unitig_749.g13305 Utricularia gibba HOM05D006087 ORTHO05D007479 7.9e-10 67.8 110 33.6
PSO017G6027 Papaver somniferum HOM05D006087 ORTHO05D007479 1.0e-09 67.4 50 56.0
PSO478G2574 Papaver somniferum HOM05D006087 ORTHO05D007479 1.0e-09 67.4 50 56.0
Cc11_g16920 Coffea canephora HOM05D006087 ORTHO05D007479 1.4e-09 67.0 89 37.1
THA.LOC104807129 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 1.4e-09 67.0 88 40.9
TAR622G0081 Trochodendron aralioides HOM05D006087 ORTHO05D007479 1.4e-09 67.0 92 39.1
Aqoxy5G03370 Aquilegia oxysepala HOM05D006087 ORTHO05D007479 1.8e-09 66.6 86 40.7
AT5G43260 Arabidopsis thaliana HOM05D006087 ORTHO05D007479 1.8e-09 66.6 85 40.0
COL.COLO4_20404 Corchorus olitorius HOM05D006087 ORTHO05D007479 1.8e-09 66.6 88 38.6
Os02g0506600 Oryza sativa ssp. japonica HOM05D006087 ORTHO05D007479 2.3e-09 66.2 67 49.3
Sed0007875 Sechium edule HOM05D006087 ORTHO05D007479 2.3e-09 66.2 94 37.2
Gohir.A12G148826 Gossypium hirsutum HOM05D006087 ORTHO05D007479 3.9e-09 65.5 52 51.9
MD13G1119200 Malus domestica HOM05D006087 ORTHO05D007479 3.9e-09 65.5 50 56.0
Pp3c18_21810 Physcomitrium patens HOM05D006087 ORTHO05D007479 3.9e-09 65.5 88 34.1
TWI36G1569 Tripterygium wilfordii HOM05D006087 ORTHO05D007479 3.9e-09 65.5 88 37.5
HPP92_024290 Vanilla planifolia HOM05D006087 ORTHO05D007479 3.9e-09 65.5 50 58.0
HPP92_024307 Vanilla planifolia HOM05D006087 ORTHO05D007479 3.9e-09 65.5 50 58.0
Zm00001eb180950 Zea mays HOM05D006087 ORTHO05D007479 3.9e-09 65.5 77 46.8
CANSAT01G2640 Cannabis sativa HOM05D006087 ORTHO05D007479 5.1e-09 65.1 85 38.8
CAN.G163.9 Capsicum annuum HOM05D006087 ORTHO05D007479 5.1e-09 65.1 50 52.0
Eucgr.B03495 Eucalyptus grandis HOM05D006087 ORTHO05D007479 5.1e-09 65.1 88 38.6
Nitab4.5_0001808g0020 Nicotiana tabacum HOM05D006087 ORTHO05D007479 5.1e-09 65.1 85 36.5
Oeu004448.1 Olea europaea HOM05D006087 ORTHO05D007479 5.1e-09 65.1 93 35.5
Sc04g0010140 Simmondsia chinensis HOM05D006087 ORTHO05D007479 5.1e-09 65.1 89 39.3
CsaV3_2G025430 Cucumis sativus L. HOM05D006087 ORTHO05D007479 6.7e-09 64.7 83 41.0
ECA233G2512 Erigeron canadensis HOM05D006443 ORTHO05D007797 6.7e-09 64.7 50 54.0
Gohir.D04G182800 Gossypium hirsutum HOM05D006087 ORTHO05D007479 6.7e-09 64.7 88 36.4
Gorai.012G175800 Gossypium raimondii HOM05D006087 ORTHO05D007479 6.7e-09 64.7 88 36.4
Oeu036868.1 Olea europaea HOM05D006087 ORTHO05D007479 6.7e-09 64.7 93 35.5
Solyc05g015470.1 Solanum lycopersicum HOM05D006087 ORTHO05D007479 6.7e-09 64.7 50 52.0
Sopen05g010780 Solanum pennellii HOM05D006087 ORTHO05D007479 6.7e-09 64.7 50 52.0
PGSC0003DMG400014051 Solanum tuberosum HOM05D006087 ORTHO05D007479 6.7e-09 64.7 50 52.0
SGA_v2.0_scaffold9G04680 Striga asiatica HOM05D006087 ORTHO05D007479 8.8e-09 64.3 50 50.0
Thecc.02G208200 Theobroma cacao HOM05D006087 ORTHO05D007479 8.8e-09 64.3 88 38.6
CARHR180610 Cardamine hirsuta HOM05D006087 ORTHO05D007479 1.1e-08 63.9 85 38.8
Duzib251G0251 Durio zibethinus HOM05D006087 ORTHO05D007479 1.1e-08 63.9 88 38.6
ClCG08G017160 Citrullus lanatus HOM05D006087 ORTHO05D007479 1.5e-08 63.5 88 38.6
Medtr3g085300 Medicago truncatula HOM05D006087 ORTHO05D007479 2.5e-08 62.8 88 36.4
Rhsim12G0025700 Rhododendron simsii HOM05D006087 ORTHO05D007479 2.5e-08 62.8 85 40.0
Duzib268G0474 Durio zibethinus HOM05D006087 ORTHO05D007479 4.3e-08 62.0 93 36.6
Gohir.A04G139600 Gossypium hirsutum HOM05D006087 ORTHO05D007479 4.3e-08 62.0 88 36.4
Nitab4.5_0000039g0180 Nicotiana tabacum HOM05D006087 ORTHO05D007479 5.7e-08 61.6 85 34.1
QL03p052667 Quercus lobata HOM05D006087 ORTHO05D007479 5.7e-08 61.6 47 55.3
Migut.E00016 Erythranthe guttata HOM05D006087 ORTHO05D007479 7.4e-08 61.2 88 36.4
CSS0016505 Camellia sinensis var. sinensis HOM05D006087 ORTHO05D007479 1.3e-07 60.5 85 37.6
CSS0027394 Camellia sinensis var. sinensis HOM05D006087 ORTHO05D007479 1.3e-07 60.5 85 37.6
Pp3c14_11460 Physcomitrium patens HOM05D006087 ORTHO05D007479 1.7e-07 60.1 90 38.9
Psat5g096360 Pisum sativum HOM05D006087 ORTHO05D007479 1.7e-07 60.1 88 38.6
TPR.G17782 Trifolium pratense HOM05D006087 ORTHO05D007479 2.8e-07 59.3 88 38.6
AUR62028927 Chenopodium quinoa HOM05D006087 ORTHO05D007479 3.7e-07 58.9 88 37.5
AUR62005621 Chenopodium quinoa HOM05D006087 ORTHO05D007479 4.8e-07 58.5 88 37.5
Hma1.2p1_0065F.1_g035460 Hydrangea macrophylla HOM05D006087 ORTHO05D007479 4.8e-07 58.5 89 34.8
MD05G1114700 Malus domestica HOM05D006087 ORTHO05D007479 4.8e-07 58.5 44 54.5
ATR0561G204 Amborella trichopoda HOM05D006087 ORTHO05D007479 6.3e-07 58.2 85 37.6
CiPaw.06G102800 Carya illinoinensis HOM05D006087 ORTHO05D007479 6.3e-07 58.2 85 38.8
Pp3c17_7480 Physcomitrium patens HOM05D006087 ORTHO05D007479 6.3e-07 58.2 90 37.8
MCO04G324 Micromonas commoda HOM05D002522 ORTHO05D002744 1.4e-06 57.0 129 34.1
MBI11_g44422_MAGBIO Magnolia biondii HOM05D006087 ORTHO05D007479 1.8e-06 56.6 94 37.2
THA.LOC104825505 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 2.4e-06 56.2 53 47.2
Ca_16458_v3 Cicer arietinum L. HOM05D006087 ORTHO05D007479 3.1e-06 55.8 88 36.4
Migut.K00735 Erythranthe guttata HOM05D006087 ORTHO05D007479 3.1e-06 55.8 89 34.8
MBI11_g05327_MAGBIO Magnolia biondii HOM05D006087 ORTHO05D007479 3.1e-06 55.8 75 40.0
Prupe.1G225600 Prunus persica HOM05D006087 ORTHO05D007479 3.1e-06 55.8 50 50.0
Cfa009371 Carpinus fangiana HOM05D006087 ORTHO05D007479 4.1e-06 55.5 85 36.5
Haze_12421 Corylus avellana HOM05D006087 ORTHO05D007479 4.1e-06 55.5 85 36.5
Potri.003G171800 Populus trichocarpa HOM05D006087 ORTHO05D007479 4.1e-06 55.5 88 35.2


User provided reference genes

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