Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre10.g430900 Chlamydomonas reinhardtii HOM05D004952 ORTHO05D006131 0.0e+00 2768.8 1890 100.0
FvH4_2g40750 Fragaria vesca HOM05D004952 ORTHO05D006131 1.2e-09 70.9 155 29.7
FAN15G3424 Fragaria x ananassa HOM05D004952 ORTHO05D006131 1.2e-09 70.9 155 29.7
FAN27G3039 Fragaria x ananassa HOM05D004952 ORTHO05D006131 1.2e-09 70.9 155 29.7
RcHm_v2.0_Chr6g0299841 Rosa chinensis HOM05D004952 ORTHO05D006131 2.1e-09 70.1 155 29.0
MD15G1036000 Malus domestica HOM05D004952 ORTHO05D006131 2.8e-09 69.7 155 29.0
VMungo1309G1417 Vigna mungo HOM05D004952 ORTHO05D006131 2.8e-09 69.7 155 28.4
CANSAT25G3148 Cannabis sativa HOM05D004952 ORTHO05D006131 3.6e-09 69.3 155 28.4
Cc00_g16150 Coffea canephora HOM05D004952 ORTHO05D006131 6.2e-09 68.6 155 28.4
Hma1.2p1_0260F.1_g104650 Hydrangea macrophylla HOM05D004952 ORTHO05D006131 6.2e-09 68.6 155 27.7
Hma1.2p1_0260F.1_g104660 Hydrangea macrophylla HOM05D004952 ORTHO05D006131 6.2e-09 68.6 155 27.7
Prupe.1G389900 Prunus persica HOM05D004952 ORTHO05D006131 8.1e-09 68.2 155 28.4
Ca_15974_v3 Cicer arietinum L. HOM05D004952 ORTHO05D006131 1.1e-08 67.8 155 27.7
FAN20G1371 Fragaria x ananassa HOM05D004952 ORTHO05D006131 1.1e-08 67.8 155 29.0
Eucgr.F02379 Eucalyptus grandis HOM05D004952 ORTHO05D006131 1.4e-08 67.4 159 27.7
Peaxi162Scf01092g00128 Petunia axillaris HOM05D004952 ORTHO05D006131 1.4e-08 67.4 155 27.7
Phvul.009G062500 Phaseolus vulgaris HOM05D004952 ORTHO05D006131 1.4e-08 67.4 162 27.2
COL.COLO4_06475 Corchorus olitorius HOM05D004952 ORTHO05D006131 1.8e-08 67.0 155 28.4
Glyma.06G036500 Glycine max HOM05D004952 ORTHO05D006131 1.8e-08 67.0 155 27.7
PGR031G2121 Punica granatum HOM05D004952 ORTHO05D006131 1.8e-08 67.0 155 28.4
Rhsim13G0049200 Rhododendron simsii HOM05D004952 ORTHO05D006131 2.3e-08 66.6 155 27.7
Lj1g0021809 Lotus japonicus HOM05D004952 ORTHO05D006131 3.1e-08 66.2 155 27.1
CAN.G371.63 Capsicum annuum HOM05D004952 ORTHO05D006131 4.0e-08 65.9 155 27.7
Gorai.011G225900 Gossypium raimondii HOM05D004952 ORTHO05D006131 4.0e-08 65.9 171 27.5
PGSC0003DMG400008031 Solanum tuberosum HOM05D004952 ORTHO05D006131 4.0e-08 65.9 155 27.7
SEGI_10220 Sequoiadendron giganteum HOM05D004952 ORTHO05D006131 5.2e-08 65.5 166 29.5
SEGI_10713 Sequoiadendron giganteum HOM05D004952 ORTHO05D006131 5.2e-08 65.5 166 29.5
arahy.Tifrunner.gnm1.ann1.LUQS0S Arachis hypogaea HOM05D004952 ORTHO05D006131 6.8e-08 65.1 155 27.1
arahy.Tifrunner.gnm1.ann1.SSY1YH Arachis hypogaea HOM05D004952 ORTHO05D006131 6.8e-08 65.1 155 27.1
Dinv39342 Davidia involucrata HOM05D004952 ORTHO05D006131 6.8e-08 65.1 155 27.7
Lsat_1_v5_gn_6_69040 Lactuca sativa HOM05D004952 ORTHO05D006131 6.8e-08 65.1 159 28.9
Nitab4.5_0012613g0030 Nicotiana tabacum HOM05D004952 ORTHO05D006131 6.8e-08 65.1 155 27.7
Solyc04g079390.3 Solanum lycopersicum HOM05D004952 ORTHO05D006131 8.9e-08 64.7 155 27.7
Sopen04g033000 Solanum pennellii HOM05D004952 ORTHO05D006131 8.9e-08 64.7 155 27.7
vmacro02786 Vaccinium macrocarpon HOM05D004952 ORTHO05D006131 8.9e-08 64.7 155 27.7
GSVIVG01009573001 Vitis vinifera HOM05D004952 ORTHO05D006131 8.9e-08 64.7 155 27.7
Atru.chr13.612 Acer truncatum HOM05D004952 ORTHO05D006131 1.2e-07 64.3 155 27.7
ATR0706G013 Amborella trichopoda HOM05D004952 ORTHO05D006131 1.2e-07 64.3 166 28.3
ClCG05G019550 Citrullus lanatus HOM05D004952 ORTHO05D006131 1.2e-07 64.3 155 28.4
MELO3C016726.2 Cucumis melo HOM05D004952 ORTHO05D006131 1.2e-07 64.3 155 28.4
QL02p006188 Quercus lobata HOM05D004952 ORTHO05D006131 1.2e-07 64.3 155 27.7
Nitab4.5_0000068g0320 Nicotiana tabacum HOM05D004952 ORTHO05D006131 1.5e-07 63.9 155 27.7
TWI36G1022 Tripterygium wilfordii HOM05D004952 ORTHO05D006131 1.5e-07 63.9 155 27.1
TAR381G0370 Trochodendron aralioides HOM05D004952 ORTHO05D006131 1.5e-07 63.9 159 27.7
CANSAT35G0575 Cannabis sativa HOM05D004952 ORTHO05D006131 2.0e-07 63.5 155 26.5
CiPaw.16G049700 Carya illinoinensis HOM05D004952 ORTHO05D006131 2.0e-07 63.5 155 27.7
Psat5g044920 Pisum sativum HOM05D004952 ORTHO05D006131 2.0e-07 63.5 155 27.1
CsaV3_4G034010 Cucumis sativus L. HOM05D004952 ORTHO05D006131 2.6e-07 63.2 155 27.7
Gohir.D10G201200 Gossypium hirsutum HOM05D004952 ORTHO05D006131 2.6e-07 63.2 171 26.9
Sc18g0002370 Simmondsia chinensis HOM05D004952 ORTHO05D006131 3.4e-07 62.8 155 27.1
CSS0007693 Camellia sinensis var. sinensis HOM05D004952 ORTHO05D006131 4.4e-07 62.4 155 27.1
CSS0028060 Camellia sinensis var. sinensis HOM05D004952 ORTHO05D006131 4.4e-07 62.4 155 27.1
CDE04G1747 Ceratophyllum demersum HOM05D004952 ORTHO05D006131 4.4e-07 62.4 175 26.9
Os02g0523300 Oryza sativa ssp. japonica HOM05D004952 ORTHO05D006131 4.4e-07 62.4 167 28.7
Os12g0606100 Oryza sativa ssp. japonica HOM05D004952 ORTHO05D006131 4.4e-07 62.4 167 28.7
TPR.G26027 Trifolium pratense HOM05D004952 ORTHO05D006131 4.4e-07 62.4 155 27.7
unitig_0.g724 Utricularia gibba HOM05D004952 ORTHO05D006131 4.4e-07 62.4 157 27.4
Cfa003370 Carpinus fangiana HOM05D004952 ORTHO05D006131 5.8e-07 62.0 155 27.1
Ciclev10000139m.g Citrus clementina HOM05D004952 ORTHO05D006131 7.5e-07 61.6 155 27.1
MCO11G910 Micromonas commoda HOM05D004952 ORTHO05D006131 7.5e-07 61.6 177 28.2
Medtr3g101230 Medicago truncatula HOM05D004952 ORTHO05D006131 9.8e-07 61.2 155 26.5
DCAR_008784 Daucus carota HOM05D004952 ORTHO05D006131 1.3e-06 60.8 155 25.8
HanXRQChr02g0059171 Helianthus annuus HOM05D004952 ORTHO05D006131 1.3e-06 60.8 159 26.4
Potri.014G184701 Populus trichocarpa HOM05D004952 ORTHO05D006131 1.3e-06 60.8 155 26.5
Aqoxy6G00884 Aquilegia oxysepala HOM05D004952 ORTHO05D006131 2.2e-06 60.1 159 27.7
Mapoly0015s0183 Marchantia polymorpha HOM05D004952 ORTHO05D006131 2.2e-06 60.1 155 27.7
Sed0020372 Sechium edule HOM05D004952 ORTHO05D006131 2.2e-06 60.1 155 26.5
MSTRG.25114 Avicennia marina HOM05D004952 ORTHO05D006131 2.9e-06 59.7 155 25.2
Gohir.A10G194100 Gossypium hirsutum HOM05D004952 ORTHO05D006131 2.9e-06 59.7 155 26.5
Pp3c13_8820 Physcomitrium patens HOM05D004952 ORTHO05D006131 2.9e-06 59.7 159 27.7
Zm00001eb327280 Zea mays HOM05D004952 ORTHO05D006131 3.7e-06 59.3 160 26.9
SGA_v2.0_scaffold156G37306 Striga asiatica HOM05D004952 ORTHO05D006131 4.9e-06 58.9 155 24.5
Manes.02G076400 Manihot esculenta HOM05D004952 ORTHO05D006131 8.3e-06 58.2 155 25.8
PSO063G1848 Papaver somniferum HOM05D004952 ORTHO05D006131 8.3e-06 58.2 155 26.5


User provided reference genes

Program Settings