Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre10.g425100 Chlamydomonas reinhardtii HOM05D003428 ORTHO05D004131 0.0e+00 2877.8 2280 100.0
AagrBONN_evm.TU.Sc2ySwM_228.3176 Anthoceros agrestis HOM05D003428 ORTHO05D004131 5.8e-91 341.3 448 42.4
Pp3c14_24720 Physcomitrium patens HOM05D003428 ORTHO05D004131 1.7e-90 339.7 452 42.0
CBR_g8995 Chara braunii HOM05D003428 ORTHO05D004131 8.4e-90 337.4 469 40.7
unitig_748.g7971 Utricularia gibba HOM05D003428 ORTHO05D004131 1.9e-89 336.3 442 43.7
Zm00001eb322860 Zea mays HOM05D003428 ORTHO05D004131 9.3e-89 334.0 442 41.9
Ah.14g088090 Amaranthus hybridus HOM05D003428 ORTHO05D004131 2.1e-88 332.8 451 41.9
Potri.004G018700 Populus trichocarpa HOM05D003428 ORTHO05D004131 4.6e-88 331.6 443 43.1
Mapoly0096s0015 Marchantia polymorpha HOM05D003428 ORTHO05D004131 6.0e-88 331.3 456 41.7
Potri.011G000200 Populus trichocarpa HOM05D003428 ORTHO05D004131 7.9e-88 330.9 454 41.9
ClCG03G004880 Citrullus lanatus HOM05D003428 ORTHO05D004131 1.8e-87 329.7 451 43.2
SMO367G0744 Selaginella moellendorffii HOM05D003428 ORTHO05D004131 1.8e-87 329.7 446 41.0
MD05G1342900 Malus domestica HOM05D003428 ORTHO05D004131 2.3e-87 329.3 434 44.0
Prupe.4G024000 Prunus persica HOM05D003428 ORTHO05D004131 3.0e-87 328.9 454 42.5
MELO3C002470.2 Cucumis melo HOM05D003428 ORTHO05D004131 5.1e-87 328.2 451 42.8
AUR62021981 Chenopodium quinoa HOM05D003428 ORTHO05D004131 6.7e-87 327.8 451 41.2
Ciclev10014053m.g Citrus clementina HOM05D003428 ORTHO05D004131 6.7e-87 327.8 451 42.4
FAN25G3463 Fragaria x ananassa HOM05D003428 ORTHO05D004131 6.7e-87 327.8 436 43.6
Lj4g0005527 Lotus japonicus HOM05D003428 ORTHO05D004131 6.7e-87 327.8 450 41.8
Os07g0520900 Oryza sativa ssp. japonica HOM05D003428 ORTHO05D004131 6.7e-87 327.8 459 39.7
SalBow3G0064 Salvia bowleyana HOM05D003428 ORTHO05D004131 6.7e-87 327.8 454 41.6
Migut.M01297 Erythranthe guttata HOM05D003428 ORTHO05D004131 8.7e-87 327.4 445 42.5
Lalb_Chr15g0087431 Lupinus albus HOM05D003428 ORTHO05D004131 8.7e-87 327.4 442 41.9
CsaV3_1G010910 Cucumis sativus L. HOM05D003428 ORTHO05D004131 1.1e-86 327.0 449 42.5
FvH4_3g02460 Fragaria vesca HOM05D003428 ORTHO05D004131 1.1e-86 327.0 436 43.3
RcHm_v2.0_Chr5g0003711 Rosa chinensis HOM05D003428 ORTHO05D004131 1.1e-86 327.0 451 43.5
MBI02_g28339_MAGBIO Magnolia biondii HOM05D003428 ORTHO05D004131 1.5e-86 326.6 445 42.2
Thecc.06G217400 Theobroma cacao HOM05D003428 ORTHO05D004131 1.5e-86 326.6 443 43.1
AUR62012675 Chenopodium quinoa HOM05D003428 ORTHO05D004131 1.9e-86 326.2 451 41.0
SalBow3G1270 Salvia bowleyana HOM05D003428 ORTHO05D004131 1.9e-86 326.2 454 41.4
SGA_v2.0_scaffold7G03871 Striga asiatica HOM05D003428 ORTHO05D004131 1.9e-86 326.2 442 41.9
PSO832G0075 Papaver somniferum HOM05D003428 ORTHO05D004131 2.5e-86 325.9 442 42.1
TAR624G0497 Trochodendron aralioides HOM05D003428 ORTHO05D004131 4.3e-86 325.1 453 41.7
Gohir.D06G153100 Gossypium hirsutum HOM05D003428 ORTHO05D004131 5.7e-86 324.7 443 42.4
Gorai.010G179100 Gossypium raimondii HOM05D003428 ORTHO05D004131 5.7e-86 324.7 443 42.4
MD10G1317800 Malus domestica HOM05D003428 ORTHO05D004131 5.7e-86 324.7 423 43.0
CAN.G569.22 Capsicum annuum HOM05D003428 ORTHO05D004131 7.4e-86 324.3 452 41.4
QL05p074042 Quercus lobata HOM05D003428 ORTHO05D004131 7.4e-86 324.3 452 41.2
Solyc02g080340.3 Solanum lycopersicum HOM05D003428 ORTHO05D004131 7.4e-86 324.3 461 40.8
Gohir.A06G147300 Gossypium hirsutum HOM05D003428 ORTHO05D004131 9.6e-86 323.9 443 42.4
Sabra04G0010400 Salix brachista HOM05D003428 ORTHO05D004131 9.6e-86 323.9 443 42.7
Gohir.A05G168700 Gossypium hirsutum HOM05D003428 ORTHO05D004131 1.3e-85 323.6 443 42.7
TWI38G0331 Tripterygium wilfordii HOM05D003428 ORTHO05D004131 1.3e-85 323.6 439 43.3
Sed0007172 Sechium edule HOM05D003428 ORTHO05D004131 1.6e-85 323.2 451 41.5
Hund23486 Selenicereus undatus HOM05D003428 ORTHO05D004131 1.6e-85 323.2 451 41.0
Sopen02g025040 Solanum pennellii HOM05D003428 ORTHO05D004131 1.6e-85 323.2 461 40.8
FAN21G0107 Fragaria x ananassa HOM05D003428 ORTHO05D004131 2.1e-85 322.8 432 43.5
Gohir.D05G171900 Gossypium hirsutum HOM05D003428 ORTHO05D004131 2.1e-85 322.8 443 42.7
Manes.16G010100 Manihot esculenta HOM05D003428 ORTHO05D004131 2.1e-85 322.8 443 42.2
GSVIVG01012655001 Vitis vinifera HOM05D003428 ORTHO05D004131 2.1e-85 322.8 441 41.5
CiPaw.09G089300 Carya illinoinensis HOM05D003428 ORTHO05D004131 2.8e-85 322.4 461 41.2
Peaxi162Scf00262g00059 Petunia axillaris HOM05D003428 ORTHO05D004131 2.8e-85 322.4 461 40.3
Medtr4g131850 Medicago truncatula HOM05D003428 ORTHO05D004131 3.7e-85 322.0 451 42.6
Duzib235G0114 Durio zibethinus HOM05D003428 ORTHO05D004131 4.8e-85 321.6 453 42.2
VMungo1215G2587 Vigna mungo HOM05D003428 ORTHO05D004131 4.8e-85 321.6 441 41.3
CSS0004273 Camellia sinensis var. sinensis HOM05D003428 ORTHO05D004131 6.2e-85 321.2 452 40.5
CSS0019319 Camellia sinensis var. sinensis HOM05D003428 ORTHO05D004131 6.2e-85 321.2 452 40.5
Glyma.17G015200 Glycine max HOM05D003428 ORTHO05D004131 6.2e-85 321.2 451 41.2
Ca_21094_v3 Cicer arietinum L. HOM05D003428 ORTHO05D004131 8.2e-85 320.9 450 41.8
DCAR_004205 Daucus carota HOM05D003428 ORTHO05D004131 8.2e-85 320.9 442 41.6
Gorai.009G177000 Gossypium raimondii HOM05D003428 ORTHO05D004131 8.2e-85 320.9 445 42.2
Sc17g0007210 Simmondsia chinensis HOM05D003428 ORTHO05D004131 8.2e-85 320.9 451 41.0
THA.LOC104809511 Tarenaya hassleriana HOM05D003428 ORTHO05D004131 8.2e-85 320.9 426 42.3
arahy.Tifrunner.gnm1.ann1.YW42SM Arachis hypogaea HOM05D003428 ORTHO05D004131 1.1e-84 320.5 451 41.0
Ca_30202_v3 Cicer arietinum L. HOM05D003428 ORTHO05D004131 1.1e-84 320.5 462 41.6
Dinv20034 Davidia involucrata HOM05D003428 ORTHO05D004131 1.1e-84 320.5 453 41.3
arahy.Tifrunner.gnm1.ann1.D341M5 Arachis hypogaea HOM05D003428 ORTHO05D004131 1.4e-84 320.1 451 41.0
TPR.G37012 Trifolium pratense HOM05D003428 ORTHO05D004131 1.4e-84 320.1 444 41.4
Haze_06774 Corylus avellana HOM05D003428 ORTHO05D004131 1.8e-84 319.7 452 40.7
Glyma.07G259000 Glycine max HOM05D003428 ORTHO05D004131 1.8e-84 319.7 451 41.5
ATR0752G216 Amborella trichopoda HOM05D003428 ORTHO05D004131 3.1e-84 318.9 430 41.9
AT1G61850 Arabidopsis thaliana HOM05D003428 ORTHO05D004131 3.1e-84 318.9 427 41.7
Lj2C271T3 Lonicera japonica HOM05D003428 ORTHO05D004131 4.0e-84 318.5 449 41.4
Nitab4.5_0010096g0010 Nicotiana tabacum HOM05D003428 ORTHO05D004131 4.0e-84 318.5 461 40.1
Oeu063903.1 Olea europaea HOM05D003428 ORTHO05D004131 4.0e-84 318.5 455 41.3
AL2G14210 Arabidopsis lyrata HOM05D003428 ORTHO05D004131 5.3e-84 318.2 427 41.5
Dinv13872 Davidia involucrata HOM05D003428 ORTHO05D004131 5.3e-84 318.2 453 40.6
Eucgr.E04091 Eucalyptus grandis HOM05D003428 ORTHO05D004131 6.9e-84 317.8 453 40.8
Cfa000250 Carpinus fangiana HOM05D003428 ORTHO05D004131 9.0e-84 317.4 452 40.5
Cc09_g01930 Coffea canephora HOM05D003428 ORTHO05D004131 9.0e-84 317.4 452 40.7
Phvul.003G077100 Phaseolus vulgaris HOM05D003428 ORTHO05D004131 9.0e-84 317.4 441 40.6
PGR042G0159 Punica granatum HOM05D003428 ORTHO05D004131 9.0e-84 317.4 452 41.6
Aa31LG2G8980 Aethionema arabicum HOM05D003428 ORTHO05D004131 1.2e-83 317.0 427 41.9
Carub.0002s0319 Capsella rubella HOM05D003428 ORTHO05D004131 1.2e-83 317.0 442 40.5
Psat4g063040 Pisum sativum HOM05D003428 ORTHO05D004131 1.5e-83 316.6 451 41.5
CSS0033465 Camellia sinensis var. sinensis HOM05D003428 ORTHO05D004131 2.0e-83 316.2 442 39.6
CARHR050470 Cardamine hirsuta HOM05D003428 ORTHO05D004131 2.0e-83 316.2 427 41.9
vmacro15816 Vaccinium macrocarpon HOM05D003428 ORTHO05D004131 2.0e-83 316.2 427 42.4
HanXRQChr15g0471381 Helianthus annuus HOM05D003428 ORTHO05D004131 2.6e-83 315.8 442 41.4
PSO210G3795 Papaver somniferum HOM05D003428 ORTHO05D004131 2.6e-83 315.8 433 41.1
Rhsim02G0110400 Rhododendron simsii HOM05D003428 ORTHO05D004131 2.6e-83 315.8 427 42.2
EL10Ac8g20020 Beta vulgaris HOM05D003428 ORTHO05D004131 3.4e-83 315.5 451 40.6
CiPaw.10G069400 Carya illinoinensis HOM05D003428 ORTHO05D004131 5.8e-83 314.7 463 40.8
Sp2g02690 Schrenkiella parvula HOM05D003428 ORTHO05D004131 5.8e-83 314.7 427 41.9
HanXRQChr01g0003641 Helianthus annuus HOM05D003428 ORTHO05D004131 7.6e-83 314.3 442 40.5
Lsat_1_v5_gn_7_17340 Lactuca sativa HOM05D003428 ORTHO05D004131 7.6e-83 314.3 422 41.7
Actinidia11848 Actinidia chinensis HOM05D003428 ORTHO05D004131 1.0e-82 313.9 420 42.4
Thhalv10023219m.g Eutrema salsugineum HOM05D003428 ORTHO05D004131 1.0e-82 313.9 427 41.7
HanXRQChr05g0129871 Helianthus annuus HOM05D003428 ORTHO05D004131 1.0e-82 313.9 443 42.0
Aa31LG1G3130 Aethionema arabicum HOM05D003428 ORTHO05D004131 1.3e-82 313.5 427 42.2
BcaB07g31289 Brassica carinata HOM05D003428 ORTHO05D004131 1.7e-82 313.2 427 41.5
BcaC04g22357 Brassica carinata HOM05D003428 ORTHO05D004131 1.7e-82 313.2 427 41.5
A09p16630 Brassica napus HOM05D003428 ORTHO05D004131 1.7e-82 313.2 427 41.5
C09p20200 Brassica napus HOM05D003428 ORTHO05D004131 1.7e-82 313.2 427 41.5
BolC9t54926H Brassica oleracea HOM05D003428 ORTHO05D004131 1.7e-82 313.2 427 41.5
BraA09t37300Z Brassica rapa HOM05D003428 ORTHO05D004131 1.7e-82 313.2 427 41.5
ECA236G4773 Erigeron canadensis HOM05D003428 ORTHO05D004131 1.7e-82 313.2 453 41.3
arahy.Tifrunner.gnm1.ann1.IL23TX Arachis hypogaea HOM05D003428 ORTHO05D004131 2.2e-82 312.8 449 41.0
Ah.09g235070 Amaranthus hybridus HOM05D003428 ORTHO05D004131 3.8e-82 312.0 455 40.2
CDE05G1926 Ceratophyllum demersum HOM05D003428 ORTHO05D004131 3.8e-82 312.0 443 41.1
Manes.17G037100 Manihot esculenta HOM05D003428 ORTHO05D004131 3.8e-82 312.0 434 41.2
ECA248G3692 Erigeron canadensis HOM05D003428 ORTHO05D004131 1.9e-81 309.7 437 41.0
Aqoxy7G03064 Aquilegia oxysepala HOM05D003428 ORTHO05D004131 1.2e-80 307.0 450 40.7
arahy.Tifrunner.gnm1.ann1.FVAC65 Arachis hypogaea HOM05D003428 ORTHO05D004131 3.9e-79 302.0 449 40.5
Lsat_1_v5_gn_1_124260 Lactuca sativa HOM05D003428 ORTHO05D004131 5.1e-79 301.6 471 39.1
Gohir.D10G014100 Gossypium hirsutum HOM05D003428 ORTHO05D004131 6.7e-79 301.2 422 41.5
arahy.Tifrunner.gnm1.ann1.0P9V0B Arachis hypogaea HOM05D003428 ORTHO05D004131 8.7e-79 300.8 461 39.7
Gorai.011G015900 Gossypium raimondii HOM05D003428 ORTHO05D004131 9.7e-78 297.4 431 41.5
Gohir.D09G069300 Gossypium hirsutum HOM05D003428 ORTHO05D004131 4.8e-77 295.0 446 39.7
Gorai.006G083500 Gossypium raimondii HOM05D003428 ORTHO05D004131 4.8e-77 295.0 446 39.7
Nn1g03583 Nelumbo nucifera HOM05D003428 ORTHO05D004131 1.1e-76 293.9 431 39.9
Gohir.A09G069400 Gossypium hirsutum HOM05D003428 ORTHO05D004131 1.8e-76 293.1 443 39.7
Gohir.A10G014100 Gossypium hirsutum HOM05D003428 ORTHO05D004131 2.4e-76 292.7 427 40.7
Gorai.006G083400 Gossypium raimondii HOM05D003428 ORTHO05D004131 1.9e-73 283.1 449 38.1
Gohir.D09G069200 Gossypium hirsutum HOM05D003428 ORTHO05D004131 5.5e-73 281.6 449 37.9
MCO07G720 Micromonas commoda HOM05D003428 ORTHO05D004131 2.7e-72 279.3 437 38.4
Lj1A1228G69 Lonicera japonica HOM05D003428 ORTHO05D004131 4.6e-72 278.5 401 40.6
TWI38G0316 Tripterygium wilfordii HOM05D003428 ORTHO05D004131 1.8e-71 276.6 417 38.8
Gohir.A09G069300 Gossypium hirsutum HOM05D003428 ORTHO05D004131 1.4e-68 266.9 423 38.1
COL.COLO4_31743 Corchorus olitorius HOM05D003428 ORTHO05D004131 1.2e-67 263.8 421 38.5
Cpa.g.sc198.25 Carica papaya HOM05D003428 ORTHO05D004131 1.2e-59 237.3 352 40.3
HPP92_017608 Vanilla planifolia HOM05D003428 ORTHO05D004131 6.7e-55 221.5 281 42.0
PGSC0003DMG400002079 Solanum tuberosum HOM05D003428 ORTHO05D004131 1.1e-52 214.2 284 43.3
CDE05G1211 Ceratophyllum demersum HOM05D003428 ORTHO05D004131 2.7e-48 199.5 421 32.5
Zm00001eb106120 Zea mays HOM05D003428 ORTHO05D004131 1.0e-47 197.6 304 38.8
Hund21391 Selenicereus undatus HOM05D003428 ORTHO05D004131 2.8e-45 189.5 307 38.8
Duzib192G0759 Durio zibethinus HOM05D003428 ORTHO05D004131 3.8e-42 179.1 161 52.8
Atru.chr10.2177 Acer truncatum HOM05D003428 ORTHO05D004131 2.6e-38 166.4 299 36.5
Nn7g36944 Nelumbo nucifera HOM05D003428 ORTHO05D004131 1.1e-36 161.0 170 47.6
Atru.chr10.2178 Acer truncatum HOM05D003428 ORTHO05D004131 7.2e-33 148.3 142 50.7
MSTRG.13150 Avicennia marina HOM05D003428 ORTHO05D004131 2.9e-26 126.3 167 43.7
Hma1.2p1_2687F.1_g326960 Hydrangea macrophylla HOM05D003428 ORTHO05D004131 2.0e-22 113.6 127 49.6
Duzib192G0559 Durio zibethinus HOM05D003428 ORTHO05D004131 3.4e-22 112.8 110 55.5
PSO302G0028 Papaver somniferum HOM05D003428 ORTHO05D004131 1.7e-21 110.5 196 36.2
Hma1.2p1_2687F.1_g326970 Hydrangea macrophylla HOM05D003428 ORTHO05D004131 6.6e-18 98.6 70 61.4
Duzib192G1003 Durio zibethinus HOM05D003428 ORTHO05D004131 7.3e-17 95.1 193 36.3
Hma1.2p1_1622F.1_g294060 Hydrangea macrophylla HOM05D003428 ORTHO05D004131 2.1e-16 93.6 87 48.3
Hma1.2p1_3566F.1_g336810 Hydrangea macrophylla HOM05D003428 ORTHO05D004131 2.1e-16 93.6 87 48.3
Cpa.g.c44049 Carica papaya HOM05D003428 ORTHO05D004131 2.8e-16 93.2 91 49.5
MCO05G170 Micromonas commoda HOM05D003428 ORTHO05D268702 2.8e-16 93.2 465 24.3
COL.COLO4_13886 Corchorus olitorius HOM05D003428 ORTHO05D004131 1.2e-14 87.8 119 37.8
COL.COLO4_18253 Corchorus olitorius HOM05D003428 ORTHO05D004131 2.0e-14 87.0 107 43.0
COL.COLO4_14509 Corchorus olitorius HOM05D000744 ORTHO05D000332 2.6e-14 86.7 101 42.6
COL.COLO4_27539 Corchorus olitorius HOM05D006757 ORTHO05D004651 2.2e-13 83.6 119 38.7
COL.COLO4_07719 Corchorus olitorius HOM05D003428 ORTHO05D004131 1.9e-12 80.5 117 39.3
COL.COLO4_09520 Corchorus olitorius HOM05D003428 ORTHO05D004131 5.4e-12 79.0 119 40.3
COL.COLO4_34792 Corchorus olitorius HOM05D003428 ORTHO05D004131 5.6e-09 68.9 91 40.7
MCO16G372 Micromonas commoda HOM05D003428 ORTHO05D004131 5.6e-09 68.9 84 41.7
Nn1g02123 Nelumbo nucifera HOM05D003428 ORTHO05D004131 4.7e-08 65.9 70 44.3
Oeu043225.1 Olea europaea HOM05D003428 ORTHO05D006624 4.7e-08 65.9 160 28.8
Oeu051906.1 Olea europaea HOM05D003428 ORTHO05D006624 6.2e-08 65.5 165 28.5
CBR_g8997 Chara braunii HOM05D003428 ORTHO05D004131 1.1e-07 64.7 251 51.0
Cfa025253 Carpinus fangiana HOM05D003428 ORTHO05D121975 1.4e-07 64.3 89 38.2
COL.COLO4_10528 Corchorus olitorius HOM05D001413 ORTHO05D001385 1.4e-07 64.3 91 37.4
COL.COLO4_06246 Corchorus olitorius HOM05D003428 ORTHO05D004131 3.1e-07 63.2 60 45.0
Hma1.2p1_3566F.1_g336820 Hydrangea macrophylla HOM05D003428 ORTHO05D004131 7.6e-06 58.5 64 48.4


User provided reference genes

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