Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 1.7e-173 612.8 379 100.0
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 7.5e-52 208.8 256 50.4
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 1.3e-51 208.0 238 46.2
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 1.4e-50 204.5 243 45.7
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 1.9e-50 204.1 238 46.6
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 2.4e-50 203.8 238 46.2
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 4.1e-50 203.0 238 46.2
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 4.1e-50 203.0 238 45.8
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 5.4e-50 202.6 238 46.6
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 7.0e-50 202.2 238 46.2
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 9.2e-50 201.8 238 45.4
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 1.2e-49 201.4 238 45.0
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 2.0e-49 200.7 238 45.4
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 2.0e-49 200.7 238 44.1
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 3.5e-49 199.9 238 45.8
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 3.5e-49 199.9 238 46.6
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 3.5e-49 199.9 238 45.4
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 3.5e-49 199.9 238 45.0
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 3.5e-49 199.9 250 44.4
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 4.6e-49 199.5 238 43.7
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 4.6e-49 199.5 238 45.4
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 6.0e-49 199.1 238 45.8
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 6.0e-49 199.1 238 45.4
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 6.0e-49 199.1 238 45.4
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 6.0e-49 199.1 240 45.4
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 7.8e-49 198.7 246 44.3
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 7.8e-49 198.7 245 45.3
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 7.8e-49 198.7 245 45.3
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 7.8e-49 198.7 238 45.4
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 7.8e-49 198.7 237 46.0
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 7.8e-49 198.7 238 44.5
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 7.8e-49 198.7 238 45.0
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 1.0e-48 198.4 246 44.3
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 1.0e-48 198.4 238 45.8
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 1.0e-48 198.4 237 45.6
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 1.0e-48 198.4 238 46.6
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 1.3e-48 198.0 246 43.1
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 1.3e-48 198.0 238 45.4
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 1.3e-48 198.0 237 47.3
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 1.3e-48 198.0 238 45.0
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 1.3e-48 198.0 238 45.4
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 1.7e-48 197.6 238 44.5
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 2.3e-48 197.2 244 44.7
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 2.3e-48 197.2 246 43.9
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 3.0e-48 196.8 238 46.2
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 3.9e-48 196.4 238 45.4
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 3.9e-48 196.4 238 44.1
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 5.0e-48 196.1 238 45.0
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 5.0e-48 196.1 238 45.0
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 5.0e-48 196.1 238 44.1
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 5.0e-48 196.1 244 44.7
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 6.6e-48 195.7 245 43.7
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 6.6e-48 195.7 238 45.8
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 6.6e-48 195.7 311 37.9
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 8.6e-48 195.3 245 44.1
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 8.6e-48 195.3 240 45.0
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 1.1e-47 194.9 237 43.5
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 1.5e-47 194.5 238 45.4
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 1.9e-47 194.1 238 43.3
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 1.9e-47 194.1 238 43.7
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 1.9e-47 194.1 238 43.7
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 2.5e-47 193.7 238 45.4
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 2.5e-47 193.7 238 45.0
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 2.5e-47 193.7 238 43.7
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 2.5e-47 193.7 238 43.3
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 3.3e-47 193.4 238 43.3
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 3.3e-47 193.4 238 44.5
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 3.3e-47 193.4 239 45.2
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 4.3e-47 193.0 238 43.7
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 4.3e-47 193.0 237 42.2
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 4.3e-47 193.0 255 43.1
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 7.3e-47 192.2 237 43.9
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 7.3e-47 192.2 238 45.0
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 9.5e-47 191.8 237 43.5
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 1.2e-46 191.4 238 44.1
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 1.2e-46 191.4 238 43.3
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 1.2e-46 191.4 237 43.9
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 1.6e-46 191.0 238 45.0
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 1.6e-46 191.0 238 44.1
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 2.1e-46 190.7 237 43.0
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 2.1e-46 190.7 237 43.9
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 2.8e-46 190.3 244 41.8
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 2.8e-46 190.3 237 45.1
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 3.6e-46 189.9 238 45.0
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 4.7e-46 189.5 238 43.7
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 8.0e-46 188.7 238 43.7
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 1.8e-45 187.6 236 43.2
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 2.3e-45 187.2 262 42.0
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 4.0e-45 186.4 256 41.8
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 5.2e-45 186.0 238 42.9
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.2e-44 184.9 238 44.5
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 1.2e-44 184.9 238 44.5
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 3.4e-44 183.3 238 44.1
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 5.8e-44 182.6 236 43.2
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 9.8e-44 181.8 235 43.8
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 4.9e-43 179.5 211 46.0
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 1.1e-42 178.3 238 43.3
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 1.4e-42 177.9 246 40.7
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 1.9e-42 177.6 223 46.6
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 5.4e-42 176.0 258 39.9
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 7.0e-42 175.6 263 40.3
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 9.2e-42 175.3 243 40.7
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 6.0e-41 172.6 238 42.0
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 8.6e-40 168.7 202 43.6
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 4.3e-39 166.4 224 43.8
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 5.6e-39 166.0 260 40.0
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 5.6e-39 166.0 238 38.7
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 1.4e-37 161.4 216 42.1
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 2.6e-36 157.1 180 47.8
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 5.8e-36 156.0 243 42.0
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 7.5e-36 155.6 326 31.6
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 8.3e-35 152.1 197 43.7
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 1.1e-34 151.8 246 37.4
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 1.9e-34 151.0 238 38.7
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 1.2e-33 148.3 238 39.1
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 1.2e-33 148.3 216 40.7
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 3.0e-32 143.7 310 32.6
Haze_27054 Corylus avellana HOM05D004373 ORTHO05D005203 2.4e-29 134.0 227 37.4
Cfa026944 Carpinus fangiana HOM05D001144 ORTHO05D125916 6.8e-29 132.5 253 37.2
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 2.0e-28 131.0 231 38.1
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 6.0e-25 119.4 235 34.9
Zm00001eb348030 Zea mays HOM05D004373 ORTHO05D005203 1.7e-24 117.9 182 40.7
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 1.1e-23 115.2 174 40.2
Zm00001eb347990 Zea mays HOM05D004373 ORTHO05D005203 2.5e-23 114.0 170 41.2
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 5.6e-23 112.8 99 52.5
GSVIVG01003298001 Vitis vinifera HOM05D004373 ORTHO05D005203 3.6e-22 110.2 92 51.1
Mapoly0024s0082 Marchantia polymorpha HOM05D004373 ORTHO05D005203 1.8e-21 107.8 94 51.1
Nitab4.5_0002737g0030 Nicotiana tabacum HOM05D004373 ORTHO05D005203 4.0e-21 106.7 92 50.0
Sc12g0003760 Simmondsia chinensis HOM05D004373 ORTHO05D005203 4.0e-21 106.7 167 41.3
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 5.3e-21 106.3 112 47.3
SEGI_21332 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 1.9e-18 97.8 82 52.4
QL08p043446 Quercus lobata HOM05D004373 ORTHO05D005203 9.3e-18 95.5 82 48.8
Zm00001eb348180 Zea mays HOM05D004373 ORTHO05D005203 3.5e-17 93.6 116 43.1
HPP92_000565 Vanilla planifolia HOM05D004373 ORTHO05D005203 6.0e-17 92.8 136 41.2
AL283U10040 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 1.1e-15 88.6 116 41.4
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 1.1e-15 88.6 239 29.7
TAR626G1318 Trochodendron aralioides HOM05D004373 ORTHO05D005203 2.5e-15 87.4 115 41.7
AUR62024008 Chenopodium quinoa HOM05D004373 ORTHO05D005203 5.6e-15 86.3 107 44.9
Gohir.A01G174700 Gossypium hirsutum HOM05D004373 ORTHO05D005203 3.6e-14 83.6 115 42.6
TAR626G1796 Trochodendron aralioides HOM05D004034 ORTHO05D004210 3.6e-14 83.6 66 54.5
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 1.1e-13 82.0 214 29.4
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 2.4e-13 80.9 200 31.0
GSVIVG01003300001 Vitis vinifera HOM05D004373 ORTHO05D005203 1.5e-12 78.2 115 39.1
C04p19740 Brassica napus HOM05D004373 ORTHO05D005203 3.4e-12 77.0 82 47.6
Zm00001eb348170 Zea mays HOM05D004373 ORTHO05D005203 7.6e-12 75.9 185 30.3
Nitab4.5_0002737g0010 Nicotiana tabacum HOM05D004373 ORTHO05D005203 2.9e-11 73.9 85 42.4
BolC4t23507H Brassica oleracea HOM05D004373 ORTHO05D005203 6.4e-11 72.8 60 56.7
BcaC02g11170 Brassica carinata HOM05D004373 ORTHO05D005203 2.4e-10 70.9 114 37.7
C04p19750 Brassica napus HOM05D004373 ORTHO05D005203 2.4e-10 70.9 114 37.7
BolC4t23508H Brassica oleracea HOM05D004373 ORTHO05D005203 2.4e-10 70.9 114 37.7
CSS0011448 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 9.3e-10 68.9 56 51.8
Manes.12G052251 Manihot esculenta HOM05D004373 ORTHO05D005203 1.6e-06 58.2 70 40.0
QL08p043443 Quercus lobata HOM05D004373 ORTHO05D005203 2.8e-06 57.4 70 41.4


User provided reference genes

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