Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre10.g419700 Chlamydomonas reinhardtii HOM05D005314 ORTHO05D006522 3.8e-184 648.3 391 100.0
Mapoly0049s0128 Marchantia polymorpha HOM05D005314 ORTHO05D006522 4.9e-46 189.5 335 36.7
AUR62009122 Chenopodium quinoa HOM05D005314 ORTHO05D006522 2.5e-42 177.2 332 35.5
Thhalv10014010m.g Eutrema salsugineum HOM05D005314 ORTHO05D006522 3.3e-42 176.8 342 34.2
THA.LOC104811236 Tarenaya hassleriana HOM05D005314 ORTHO05D006522 9.5e-42 175.3 341 34.0
AT5G11960 Arabidopsis thaliana HOM05D005314 ORTHO05D006522 6.2e-41 172.6 342 33.9
A10p25800 Brassica napus HOM05D005314 ORTHO05D006522 8.0e-41 172.2 342 33.9
Lj1g0000731 Lotus japonicus HOM05D005314 ORTHO05D006522 8.0e-41 172.2 336 35.7
MCO12G408 Micromonas commoda HOM05D005314 ORTHO05D006522 8.0e-41 172.2 336 35.7
Sp6g31630 Schrenkiella parvula HOM05D005314 ORTHO05D006522 8.0e-41 172.2 342 33.9
C09p64870 Brassica napus HOM05D005314 ORTHO05D006522 1.0e-40 171.8 342 33.6
BolC9t59318H Brassica oleracea HOM05D005314 ORTHO05D006522 1.8e-40 171.0 342 33.6
Lalb_Chr11g0063171 Lupinus albus HOM05D005314 ORTHO05D006522 1.8e-40 171.0 336 35.7
PRCOL_00001271 Prasinoderma coloniale HOM05D005314 ORTHO05D006522 1.8e-40 171.0 352 37.5
PGR044G2019 Punica granatum HOM05D005314 ORTHO05D006522 1.8e-40 171.0 345 34.5
Actinidia30326 Actinidia chinensis HOM05D005314 ORTHO05D006522 2.3e-40 170.6 341 34.3
AL6G22740 Arabidopsis lyrata HOM05D005314 ORTHO05D006522 2.3e-40 170.6 342 33.6
Potri.018G060500 Populus trichocarpa HOM05D005314 ORTHO05D006522 3.1e-40 170.2 332 34.6
A02p01290 Brassica napus HOM05D005314 ORTHO05D006522 4.0e-40 169.9 342 33.3
BraA02t05108Z Brassica rapa HOM05D005314 ORTHO05D006522 4.0e-40 169.9 342 33.3
Carub.0006s1050 Capsella rubella HOM05D005314 ORTHO05D006522 4.0e-40 169.9 342 33.3
SalBow4G3021 Salvia bowleyana HOM05D005314 ORTHO05D006522 5.2e-40 169.5 336 33.6
CSS0005464 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 6.8e-40 169.1 361 33.8
Cc08_g10890 Coffea canephora HOM05D005314 ORTHO05D006522 6.8e-40 169.1 350 34.0
BcaNung02637 Brassica carinata HOM05D005314 ORTHO05D006522 8.9e-40 168.7 342 33.0
SGA_v2.0_scaffold20G09204 Striga asiatica HOM05D005314 ORTHO05D006522 8.9e-40 168.7 336 34.8
BcaC03g13403 Brassica carinata HOM05D005314 ORTHO05D006522 1.2e-39 168.3 342 33.0
C02p05500 Brassica napus HOM05D005314 ORTHO05D006522 1.2e-39 168.3 342 33.0
BolC2t06496H Brassica oleracea HOM05D005314 ORTHO05D006522 1.2e-39 168.3 342 33.0
BraA10t44644Z Brassica rapa HOM05D005314 ORTHO05D006522 1.2e-39 168.3 343 33.8
Gohir.D13G194600 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.2e-39 168.3 335 33.4
Phvul.009G078900 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 1.2e-39 168.3 334 34.4
GSVIVG01035376001 Vitis vinifera HOM05D005314 ORTHO05D006522 1.2e-39 168.3 358 33.5
Aa31LG3G15270 Aethionema arabicum HOM05D005314 ORTHO05D006522 1.5e-39 167.9 342 33.9
Gohir.A13G187700 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.5e-39 167.9 335 33.4
Gorai.013G220600 Gossypium raimondii HOM05D005314 ORTHO05D006522 1.5e-39 167.9 335 33.4
Manes.03G050000 Manihot esculenta HOM05D005314 ORTHO05D006522 2.0e-39 167.5 335 33.1
Thecc.09G057100 Theobroma cacao HOM05D005314 ORTHO05D006522 2.0e-39 167.5 335 33.4
MSTRG.25961 Avicennia marina HOM05D005314 ORTHO05D006522 2.6e-39 167.2 351 34.2
Gohir.A07G021950 Gossypium hirsutum HOM05D005314 ORTHO05D006522 2.6e-39 167.2 352 33.2
Gorai.001G022500 Gossypium raimondii HOM05D005314 ORTHO05D006522 2.6e-39 167.2 352 33.0
Peaxi162Scf01088g00005 Petunia axillaris HOM05D005314 ORTHO05D006522 3.4e-39 166.8 346 33.5
Eucgr.C03058 Eucalyptus grandis HOM05D005314 ORTHO05D006522 4.4e-39 166.4 347 32.9
Glyma.06G053100 Glycine max HOM05D005314 ORTHO05D006522 4.4e-39 166.4 334 34.1
PSO210G6321 Papaver somniferum HOM05D005314 ORTHO05D006522 5.8e-39 166.0 328 34.8
PSO210G6435 Papaver somniferum HOM05D005314 ORTHO05D006522 5.8e-39 166.0 328 34.8
TPR.G13039 Trifolium pratense HOM05D005314 ORTHO05D006522 5.8e-39 166.0 333 34.8
Lalb_Chr22g0356141 Lupinus albus HOM05D005314 ORTHO05D006522 1.3e-38 164.9 334 34.7
CANSAT25G2280 Cannabis sativa HOM05D005314 ORTHO05D006522 1.7e-38 164.5 342 33.9
Nn8g38796 Nelumbo nucifera HOM05D005314 ORTHO05D006522 1.7e-38 164.5 336 34.2
Potri.006G226000 Populus trichocarpa HOM05D005314 ORTHO05D006522 1.7e-38 164.5 360 32.8
COL.COLO4_21084 Corchorus olitorius HOM05D005314 ORTHO05D006522 2.2e-38 164.1 335 33.1
Dinv22878 Davidia involucrata HOM05D005314 ORTHO05D006522 2.2e-38 164.1 332 34.0
Glyma.14G097400 Glycine max HOM05D005314 ORTHO05D006522 2.2e-38 164.1 352 34.7
Phvul.001G037500 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 2.2e-38 164.1 348 34.8
Rhsim11G0042200 Rhododendron simsii HOM05D005314 ORTHO05D006522 2.2e-38 164.1 353 34.6
Hund19438 Selenicereus undatus HOM05D005314 ORTHO05D006522 2.2e-38 164.1 326 34.0
ATR0789G137 Amborella trichopoda HOM05D005314 ORTHO05D006522 2.9e-38 163.7 344 34.3
Ca_13152_v3 Cicer arietinum L. HOM05D005314 ORTHO05D006522 2.9e-38 163.7 346 35.0
Migut.A00114 Erythranthe guttata HOM05D005314 ORTHO05D006522 2.9e-38 163.7 332 33.4
TWI32G0330 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 2.9e-38 163.7 332 33.7
TAR369G0158 Trochodendron aralioides HOM05D005314 ORTHO05D006522 2.9e-38 163.7 334 33.8
TAR636G1106 Trochodendron aralioides HOM05D005314 ORTHO05D006522 2.9e-38 163.7 334 33.8
HPP92_007653 Vanilla planifolia HOM05D005314 ORTHO05D006522 2.9e-38 163.7 342 32.7
Sopen06g012940 Solanum pennellii HOM05D005314 ORTHO05D006522 3.7e-38 163.3 342 33.0
Cfa017974 Carpinus fangiana HOM05D005314 ORTHO05D006522 4.9e-38 162.9 335 33.4
Medtr1g015820 Medicago truncatula HOM05D005314 ORTHO05D006522 4.9e-38 162.9 336 34.8
Solyc06g036780.3 Solanum lycopersicum HOM05D005314 ORTHO05D006522 4.9e-38 162.9 342 33.0
Haze_18156 Corylus avellana HOM05D005314 ORTHO05D006522 6.4e-38 162.5 335 33.4
HanXRQChr08g0226511 Helianthus annuus HOM05D005314 ORTHO05D006522 6.4e-38 162.5 335 34.0
QL02p000736 Quercus lobata HOM05D005314 ORTHO05D006522 6.4e-38 162.5 336 33.9
RcHm_v2.0_Chr6g0311221 Rosa chinensis HOM05D005314 ORTHO05D006522 6.4e-38 162.5 341 33.1
FvH4_2g31600 Fragaria vesca HOM05D005314 ORTHO05D006522 1.4e-37 161.4 341 32.8
Psat6g021480 Pisum sativum HOM05D005314 ORTHO05D006522 1.4e-37 161.4 333 34.5
TWI34G0632 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 1.4e-37 161.4 328 33.5
CiPaw.16G027100 Carya illinoinensis HOM05D005314 ORTHO05D006522 1.9e-37 161.0 329 34.0
ClCG05G017990 Citrullus lanatus HOM05D005314 ORTHO05D006522 1.9e-37 161.0 335 33.1
CsaV3_4G035770 Cucumis sativus L. HOM05D005314 ORTHO05D006522 1.9e-37 161.0 335 33.1
CAN.G130.11 Capsicum annuum HOM05D005314 ORTHO05D006522 3.2e-37 160.2 346 32.9
MD08G1064900 Malus domestica HOM05D005314 ORTHO05D006522 3.2e-37 160.2 346 32.1
ECA233G4949 Erigeron canadensis HOM05D005314 ORTHO05D006522 4.1e-37 159.8 356 33.1
Prupe.1G409300 Prunus persica HOM05D005314 ORTHO05D006522 4.1e-37 159.8 332 33.4
Sed0001440 Sechium edule HOM05D005314 ORTHO05D006522 4.1e-37 159.8 335 33.1
Aqoxy7G04033 Aquilegia oxysepala HOM05D000411 ORTHO05D006522 1.2e-36 158.3 335 32.8
CiPaw.15G037000 Carya illinoinensis HOM05D005314 ORTHO05D006522 1.6e-36 157.9 332 32.5
arahy.Tifrunner.gnm1.ann1.VQ1HGR Arachis hypogaea HOM05D005314 ORTHO05D006522 4.6e-36 156.4 347 33.7
MD15G1056700 Malus domestica HOM05D005314 ORTHO05D006522 6.0e-36 156.0 346 31.5
VMungo0647G2045 Vigna mungo HOM05D005314 ORTHO05D006522 7.8e-36 155.6 358 33.5
Lalb_Chr14g0366381 Lupinus albus HOM05D005314 ORTHO05D006522 1.0e-35 155.2 319 34.2
CDE06G1634 Ceratophyllum demersum HOM05D005314 ORTHO05D006522 1.3e-35 154.8 336 32.4
Lsat_1_v5_gn_6_14601 Lactuca sativa HOM05D005314 ORTHO05D006522 1.7e-35 154.5 335 33.7
unitig_88.g27677 Utricularia gibba HOM05D005314 ORTHO05D006522 1.7e-35 154.5 374 31.6
VMungo1309G2963 Vigna mungo HOM05D005314 ORTHO05D006522 5.0e-35 152.9 330 33.9
Ciclev10008891m.g Citrus clementina HOM05D005314 ORTHO05D006522 6.6e-35 152.5 322 32.9
Atru.chr7.1939 Acer truncatum HOM05D005314 ORTHO05D006522 8.6e-35 152.1 319 33.2
MELO3C016882.2 Cucumis melo HOM05D005314 ORTHO05D006522 4.3e-34 149.8 330 32.4
FAN27G1630 Fragaria x ananassa HOM05D005314 ORTHO05D006522 4.3e-34 149.8 341 31.7
CBR_g50008 Chara braunii HOM05D005314 ORTHO05D006522 1.2e-33 148.3 331 33.8
Hma1.2p1_0544F.1_g175630 Hydrangea macrophylla HOM05D005314 ORTHO05D006522 4.0e-32 143.3 335 31.0
MBI01_g21122_MAGBIO Magnolia biondii HOM05D005314 ORTHO05D006522 5.2e-32 142.9 355 30.4
DCAR_007733 Daucus carota HOM05D005314 ORTHO05D006522 6.8e-32 142.5 346 31.2
Oeu003996.1 Olea europaea HOM05D005314 ORTHO05D006522 2.0e-31 141.0 318 32.1
Sabra18G0054400 Salix brachista HOM05D005314 ORTHO05D006522 3.4e-31 140.2 401 29.7
Pp3c7_50 Physcomitrium patens HOM05D005314 ORTHO05D006522 1.1e-29 135.2 315 32.1
Glyma.04G052700 Glycine max HOM05D005314 ORTHO05D006522 1.6e-28 131.3 293 32.1
Sc23g0005690 Simmondsia chinensis HOM05D005314 ORTHO05D006522 4.6e-28 129.8 358 29.1
FAN15G2750 Fragaria x ananassa HOM05D005314 ORTHO05D006522 3.9e-27 126.7 338 29.9
FAN24G2134 Fragaria x ananassa HOM05D005314 ORTHO05D006522 3.9e-27 126.7 338 29.9
Glyma.17G227100 Glycine max HOM05D005314 ORTHO05D006522 1.1e-26 125.2 346 30.3
arahy.Tifrunner.gnm1.ann1.UTD444 Arachis hypogaea HOM05D005314 ORTHO05D006522 2.5e-26 124.0 330 30.3
Lj8A530G14 Lonicera japonica HOM05D005314 ORTHO05D006522 2.5e-26 124.0 309 31.4
arahy.Tifrunner.gnm1.ann1.GAY7D4 Arachis hypogaea HOM05D005314 ORTHO05D006522 1.2e-25 121.7 334 30.2
EL10Ac2g03829 Beta vulgaris HOM05D005314 ORTHO05D006522 2.8e-25 120.6 120 51.7
Os01g0708300 Oryza sativa ssp. japonica HOM05D005314 ORTHO05D006522 1.8e-24 117.9 125 44.8
Dinv28005 Davidia involucrata HOM05D005314 ORTHO05D006522 2.0e-23 114.4 130 46.9
Gohir.D07G021900 Gossypium hirsutum HOM05D005314 ORTHO05D006522 7.6e-23 112.5 120 49.2
Duzib150G1607 Durio zibethinus HOM05D005314 ORTHO05D006522 6.4e-22 109.4 268 29.9
vmacro00123 Vaccinium macrocarpon HOM05D005314 ORTHO05D006522 1.1e-21 108.6 299 30.4
Cpa.g.sc7.160 Carica papaya HOM05D005314 ORTHO05D006522 2.4e-21 107.5 145 43.4
arahy.Tifrunner.gnm1.ann1.6D5JL1 Arachis hypogaea HOM05D005314 ORTHO05D006522 7.1e-21 105.9 347 28.2
AUR62039137 Chenopodium quinoa HOM05D005314 ORTHO05D006522 3.5e-20 103.6 136 43.4
Sabra06G0174700 Salix brachista HOM05D005314 ORTHO05D006522 3.3e-18 97.1 396 24.2
Nitab4.5_0000972g0030 Nicotiana tabacum HOM05D005314 ORTHO05D006522 1.6e-17 94.7 345 27.2
Ah.10g034130 Amaranthus hybridus HOM05D005314 ORTHO05D006522 3.1e-16 90.5 118 42.4
Nitab4.5_0000268g0140 Nicotiana tabacum HOM05D005314 ORTHO05D006522 3.1e-16 90.5 132 40.2
CARHR201170 Cardamine hirsuta HOM05D005314 ORTHO05D006522 5.8e-15 86.3 128 36.7
Hund03325 Selenicereus undatus HOM05D005314 ORTHO05D006522 1.7e-14 84.7 263 27.4
Sed0024799 Sechium edule HOM05D005314 ORTHO05D006522 8.4e-14 82.4 121 38.0
Zm00001eb155260 Zea mays HOM05D005314 ORTHO05D006522 8.4e-14 82.4 126 35.7
BcaB03g16563 Brassica carinata HOM05D005314 ORTHO05D006522 6.0e-12 76.3 113 41.6
Cpa.g.sc7.159 Carica papaya HOM05D005314 ORTHO05D006522 8.7e-11 72.4 115 38.3
CSS0003098 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 1.5e-10 71.6 104 40.4
MD11G1243300 Malus domestica HOM05D005314 ORTHO05D006522 1.5e-10 71.6 67 52.2
arahy.Tifrunner.gnm1.ann1.IMU44M Arachis hypogaea HOM05D005314 ORTHO05D006522 1.3e-09 68.6 80 45.0
SEGI_34785 Sequoiadendron giganteum HOM05D005314 ORTHO05D006522 1.6e-09 68.2 73 53.4
Oeu040341.1 Olea europaea HOM05D005314 ORTHO05D006522 3.1e-08 63.9 74 44.6
Lj7A260G18 Lonicera japonica HOM05D005314 ORTHO05D006522 2.0e-07 61.2 261 25.7
PGSC0003DMG400031356 Solanum tuberosum HOM05D005314 ORTHO05D006522 3.4e-07 60.5 75 42.7


User provided reference genes

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