Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre09.g411500 Chlamydomonas reinhardtii HOM05D001906 ORTHO05D002083 3.5e-264 914.4 479 100.0
Medtr7g104270 Medicago truncatula HOM05D001906 ORTHO05D002083 3.6e-11 73.9 306 25.8
Ca_08990_v3 Cicer arietinum L. HOM05D001906 ORTHO05D002083 2.4e-10 71.2 295 26.4
Lj2g0019610 Lotus japonicus HOM05D001906 ORTHO05D002083 6.9e-10 69.7 265 27.5
Nitab4.5_0000160g0170 Nicotiana tabacum HOM05D001906 ORTHO05D002083 2.0e-09 68.2 244 28.7
CsaV3_2G011370 Cucumis sativus L. HOM05D001906 ORTHO05D002083 2.6e-09 67.8 241 28.2
QL10p064578 Quercus lobata HOM05D001906 ORTHO05D002083 2.6e-09 67.8 242 27.3
RcHm_v2.0_Chr2g0084501 Rosa chinensis HOM05D001906 ORTHO05D002083 3.4e-09 67.4 243 28.4
SEGI_32320 Sequoiadendron giganteum HOM05D001906 ORTHO05D002083 3.4e-09 67.4 254 25.6
Sc20g0006200 Simmondsia chinensis HOM05D001906 ORTHO05D002083 3.4e-09 67.4 298 24.2
Glyma.09G285900 Glycine max HOM05D001906 ORTHO05D002083 4.5e-09 67.0 247 27.5
Hund19954 Selenicereus undatus HOM05D001906 ORTHO05D002083 4.5e-09 67.0 314 25.2
Glyma.20G000200 Glycine max HOM05D001906 ORTHO05D002083 7.6e-09 66.2 246 27.6
Medtr1g039410 Medicago truncatula HOM05D001906 ORTHO05D002083 7.6e-09 66.2 243 27.6
QL03p037848 Quercus lobata HOM05D001906 ORTHO05D002083 7.6e-09 66.2 242 27.3
Ciclev10012143m.g Citrus clementina HOM05D001906 ORTHO05D002083 9.9e-09 65.9 296 25.7
QL10p065704 Quercus lobata HOM05D001906 ORTHO05D002083 9.9e-09 65.9 242 27.3
CiPaw.01G201900 Carya illinoinensis HOM05D001906 ORTHO05D002083 1.3e-08 65.5 242 27.3
Manes.05G207000 Manihot esculenta HOM05D001906 ORTHO05D002083 1.3e-08 65.5 241 28.2
Ca_12356_v3 Cicer arietinum L. HOM05D001906 ORTHO05D002083 2.2e-08 64.7 246 27.6
Eucgr.A00423 Eucalyptus grandis HOM05D001906 ORTHO05D002083 2.2e-08 64.7 325 25.8
PSO732G0514 Papaver somniferum HOM05D001906 ORTHO05D002083 2.2e-08 64.7 327 26.0
VMungo0251G0539 Vigna mungo HOM05D001906 ORTHO05D002083 2.2e-08 64.7 263 26.2
CiPaw.02G125000 Carya illinoinensis HOM05D001906 ORTHO05D002083 2.9e-08 64.3 244 27.5
CDE01G0117 Ceratophyllum demersum HOM05D001906 ORTHO05D002083 2.9e-08 64.3 220 27.3
QL10p064438 Quercus lobata HOM05D001906 ORTHO05D002083 2.9e-08 64.3 242 26.9
Peaxi162Scf00057g02317 Petunia axillaris HOM05D001906 ORTHO05D002083 4.9e-08 63.5 263 26.6
THA.LOC104823105 Tarenaya hassleriana HOM05D001906 ORTHO05D002083 4.9e-08 63.5 304 23.4
AagrBONN_evm.TU.Sc2ySwM_368.783 Anthoceros agrestis HOM05D002550 ORTHO05D003420 6.4e-08 63.2 337 23.4
AUR62028562 Chenopodium quinoa HOM05D001906 ORTHO05D002083 6.4e-08 63.2 296 26.0
FAN28G0989 Fragaria x ananassa HOM05D001906 ORTHO05D002083 6.4e-08 63.2 241 27.4
Phvul.001G188700 Phaseolus vulgaris HOM05D001906 ORTHO05D002083 6.4e-08 63.2 253 25.3
Solyc12g018990.2 Solanum lycopersicum HOM05D001906 ORTHO05D002083 6.4e-08 63.2 263 27.4
Sopen12g009200 Solanum pennellii HOM05D001906 ORTHO05D002083 6.4e-08 63.2 263 27.4
CANSAT56G4061 Cannabis sativa HOM05D001906 ORTHO05D002083 8.4e-08 62.8 239 28.5
CAN.G85.4 Capsicum annuum HOM05D001906 ORTHO05D002083 8.4e-08 62.8 241 27.8
Cc03_g15930 Coffea canephora HOM05D001906 ORTHO05D002083 8.4e-08 62.8 220 28.6
MCO05G085 Micromonas commoda HOM05D001906 ORTHO05D002083 8.4e-08 62.8 240 28.8
Potri.007G144600 Populus trichocarpa HOM05D001906 ORTHO05D002083 8.4e-08 62.8 263 26.2
Gohir.A09G138400 Gossypium hirsutum HOM05D001906 ORTHO05D002083 1.1e-07 62.4 299 25.1
PSO675G8186 Papaver somniferum HOM05D001906 ORTHO05D002083 1.1e-07 62.4 327 25.4
ATR0820G258 Amborella trichopoda HOM05D001906 ORTHO05D002083 1.4e-07 62.0 242 24.0
arahy.Tifrunner.gnm1.ann1.3C89HC Arachis hypogaea HOM05D001906 ORTHO05D002083 1.4e-07 62.0 246 28.0
FvH4_1g00210 Fragaria vesca HOM05D001906 ORTHO05D002083 1.4e-07 62.0 241 27.0
Hma1.2p1_0108F.1_g052160 Hydrangea macrophylla HOM05D001906 ORTHO05D002083 1.4e-07 62.0 242 26.9
Prupe.7G270100 Prunus persica HOM05D001906 ORTHO05D002083 1.4e-07 62.0 241 27.4
GSVIVG01038253001 Vitis vinifera HOM05D001906 ORTHO05D002083 1.4e-07 62.0 241 26.6
FAN26G2233 Fragaria x ananassa HOM05D001906 ORTHO05D007812 1.9e-07 61.6 241 27.0
FAN26G2252 Fragaria x ananassa HOM05D001906 ORTHO05D007812 1.9e-07 61.6 241 27.0
PGR042G0230 Punica granatum HOM05D001906 ORTHO05D002083 1.9e-07 61.6 242 26.9
TAR365G0837 Trochodendron aralioides HOM05D001906 ORTHO05D002083 1.9e-07 61.6 242 26.4
GSVIVG01022017001 Vitis vinifera HOM05D002550 ORTHO05D003420 1.9e-07 61.6 295 26.4
arahy.Tifrunner.gnm1.ann1.BL4VV5 Arachis hypogaea HOM05D001906 ORTHO05D002083 2.4e-07 61.2 297 23.2
BcaC02g11745 Brassica carinata HOM05D001906 ORTHO05D002083 2.4e-07 61.2 305 22.0
BolC4t22828H Brassica oleracea HOM05D001906 ORTHO05D002083 2.4e-07 61.2 305 22.0
CSS0029127 Camellia sinensis var. sinensis HOM05D001906 ORTHO05D002083 2.4e-07 61.2 241 27.4
DCAR_001101 Daucus carota HOM05D001906 ORTHO05D002083 2.4e-07 61.2 241 26.1
Dinv13679 Davidia involucrata HOM05D001906 ORTHO05D002083 2.4e-07 61.2 242 28.1
HanXRQChr05g0134781 Helianthus annuus HOM05D001906 ORTHO05D002083 2.4e-07 61.2 241 27.8
arahy.Tifrunner.gnm1.ann1.Z5G8E0 Arachis hypogaea HOM05D001906 ORTHO05D002083 3.2e-07 60.8 297 23.2
Cfa008517 Carpinus fangiana HOM05D001906 ORTHO05D002083 3.2e-07 60.8 221 27.1
HanXRQChr10g0294301 Helianthus annuus HOM05D001906 ORTHO05D002083 3.2e-07 60.8 241 27.8
MD15G1142900 Malus domestica HOM05D001906 ORTHO05D002083 3.2e-07 60.8 240 27.5
Mapoly0013s0094 Marchantia polymorpha HOM05D001906 ORTHO05D002083 3.2e-07 60.8 264 26.1
Medtr1g039400 Medicago truncatula HOM05D001906 ORTHO05D002083 3.2e-07 60.8 250 28.4
Phvul.003G000600 Phaseolus vulgaris HOM05D001906 ORTHO05D002083 3.2e-07 60.8 268 25.0
Atru.chr3.1972 Acer truncatum HOM05D001906 ORTHO05D002083 4.2e-07 60.5 241 27.4
Atru.chr3.1982 Acer truncatum HOM05D001906 ORTHO05D002083 4.2e-07 60.5 241 27.4
Lsat_1_v5_gn_5_147161 Lactuca sativa HOM05D001906 ORTHO05D002083 4.2e-07 60.5 238 27.7
unitig_744.g24308 Utricularia gibba HOM05D001906 ORTHO05D002083 4.2e-07 60.5 220 29.5
Atru.chr1.3689 Acer truncatum HOM05D001906 ORTHO05D002083 5.5e-07 60.1 241 27.4
ClCG06G009710 Citrullus lanatus HOM05D001906 ORTHO05D002083 5.5e-07 60.1 271 27.7
MD00G1087000 Malus domestica HOM05D001906 ORTHO05D002083 5.5e-07 60.1 253 26.1
Os08g0557900 Oryza sativa ssp. japonica HOM05D001906 ORTHO05D002083 5.5e-07 60.1 218 25.7
Sp1g04470 Schrenkiella parvula HOM05D001906 ORTHO05D002083 5.5e-07 60.1 262 25.6
TWI63G1548 Tripterygium wilfordii HOM05D001906 ORTHO05D002083 5.5e-07 60.1 241 27.0
Cpa.g.sc151.9 Carica papaya HOM05D001906 ORTHO05D002083 7.1e-07 59.7 246 25.6
ClCG04G009950 Citrullus lanatus HOM05D001906 ORTHO05D002083 7.1e-07 59.7 299 23.7
ECA234G3509 Erigeron canadensis HOM05D001906 ORTHO05D002083 7.1e-07 59.7 241 27.4
Sopen09g004450 Solanum pennellii HOM05D001906 ORTHO05D002083 7.1e-07 59.7 295 25.8
TAR362G0150 Trochodendron aralioides HOM05D001906 ORTHO05D002083 7.1e-07 59.7 238 25.6
Zm00001eb127230 Zea mays HOM05D001906 ORTHO05D002083 7.1e-07 59.7 241 27.8
arahy.Tifrunner.gnm1.ann1.DNB2Z3 Arachis hypogaea HOM05D001906 ORTHO05D002083 9.3e-07 59.3 323 22.6
arahy.Tifrunner.gnm1.ann1.XE4TF0 Arachis hypogaea HOM05D001906 ORTHO05D002083 9.3e-07 59.3 323 22.6
A05p09540 Brassica napus HOM05D001906 ORTHO05D002083 9.3e-07 59.3 305 23.6
CBR_g57837 Chara braunii HOM05D001906 ORTHO05D002083 9.3e-07 59.3 246 25.6
MBI10_g25981_MAGBIO Magnolia biondii HOM05D001906 ORTHO05D002083 9.3e-07 59.3 237 27.8
Gorai.006G156300 Gossypium raimondii HOM05D001906 ORTHO05D002083 1.2e-06 58.9 296 24.3
Lalb_Chr04g0259061 Lupinus albus HOM05D001906 ORTHO05D002083 1.2e-06 58.9 241 27.4
Nitab4.5_0002789g0020 Nicotiana tabacum HOM05D001906 ORTHO05D002083 1.2e-06 58.9 240 26.7
Os09g0567900 Oryza sativa ssp. japonica HOM05D001906 ORTHO05D002083 1.2e-06 58.9 244 27.5
PGSC0003DMG400029360 Solanum tuberosum HOM05D001906 ORTHO05D002083 1.2e-06 58.9 240 26.7
vmacro10999 Vaccinium macrocarpon HOM05D001906 ORTHO05D002083 1.2e-06 58.9 241 27.0
Duzib093G0276 Durio zibethinus HOM05D001906 ORTHO05D002083 1.6e-06 58.5 240 27.5
Gohir.D09G136200 Gossypium hirsutum HOM05D001906 ORTHO05D002083 1.6e-06 58.5 296 23.0
Lj6g0014087 Lotus japonicus HOM05D002550 ORTHO05D003420 1.6e-06 58.5 352 23.9
Solyc09g009690.3 Solanum lycopersicum HOM05D001906 ORTHO05D002083 1.6e-06 58.5 295 25.8
CsaV3_6G040600 Cucumis sativus L. HOM05D001906 ORTHO05D002083 2.1e-06 58.2 254 26.0
PSO170G1762 Papaver somniferum HOM05D002550 ORTHO05D003420 2.1e-06 58.2 320 24.7
Zm00001eb039560 Zea mays HOM05D001906 ORTHO05D002083 2.1e-06 58.2 244 25.8
BcaC07g42124 Brassica carinata HOM05D001906 ORTHO05D002083 2.7e-06 57.8 242 25.2
C08p51660 Brassica napus HOM05D001906 ORTHO05D002083 2.7e-06 57.8 242 25.2
BolC8t52694H Brassica oleracea HOM05D001906 ORTHO05D002083 2.7e-06 57.8 242 25.2
Thhalv10008223m.g Eutrema salsugineum HOM05D001906 ORTHO05D002083 2.7e-06 57.8 242 25.2
Oeu022911.1 Olea europaea HOM05D001906 ORTHO05D002083 2.7e-06 57.8 241 26.6
Sc19g0002400 Simmondsia chinensis HOM05D001906 ORTHO05D002083 2.7e-06 57.8 268 25.0
BraA09t42066Z Brassica rapa HOM05D001906 ORTHO05D002083 3.5e-06 57.4 242 25.2
CAN.G566.41 Capsicum annuum HOM05D001906 ORTHO05D002083 3.5e-06 57.4 240 26.7
Haze_11127 Corylus avellana HOM05D001906 ORTHO05D002083 3.5e-06 57.4 197 27.4
Lj1g0000699 Lotus japonicus HOM05D001906 ORTHO05D002083 3.5e-06 57.4 294 24.5
Manes.15G019400 Manihot esculenta HOM05D002550 ORTHO05D003420 3.5e-06 57.4 334 23.1
Os03g0425200 Oryza sativa ssp. japonica HOM05D001906 ORTHO05D002083 3.5e-06 57.4 321 24.6
Pp3c13_11650 Physcomitrium patens HOM05D001906 ORTHO05D002083 3.5e-06 57.4 235 26.0
ATR0743G211 Amborella trichopoda HOM05D001906 ORTHO05D002083 4.6e-06 57.0 244 27.0
EL10Ac7g16942 Beta vulgaris HOM05D001906 ORTHO05D002083 4.6e-06 57.0 239 25.9
Zm00001eb333950 Zea mays HOM05D001906 ORTHO05D002083 4.6e-06 57.0 241 27.0
Gohir.A04G096500 Gossypium hirsutum HOM05D001906 ORTHO05D002083 6.0e-06 56.6 241 26.6
Mapoly0063s0082 Marchantia polymorpha HOM05D001906 ORTHO05D002083 6.0e-06 56.6 219 29.7
Phvul.003G099100 Phaseolus vulgaris HOM05D002550 ORTHO05D003420 6.0e-06 56.6 291 25.1
Potri.008G197500 Populus trichocarpa HOM05D002550 ORTHO05D003420 6.0e-06 56.6 141 31.9
SGA_v2.0_scaffold19G08891 Striga asiatica HOM05D001906 ORTHO05D002083 6.0e-06 56.6 241 27.4
BcaB03g13452 Brassica carinata HOM05D001906 ORTHO05D002083 7.9e-06 56.2 242 25.2
BcaC07g36829 Brassica carinata HOM05D001906 ORTHO05D002083 7.9e-06 56.2 242 25.2
A08p36380 Brassica napus HOM05D001906 ORTHO05D002083 7.9e-06 56.2 242 25.2
BraA08t35542Z Brassica rapa HOM05D001906 ORTHO05D002083 7.9e-06 56.2 242 25.2
Lsat_1_v5_gn_5_147140 Lactuca sativa HOM05D001906 ORTHO05D002083 7.9e-06 56.2 232 27.6
Manes.15G019300 Manihot esculenta HOM05D002550 ORTHO05D003420 7.9e-06 56.2 157 28.0
Pp3c3_9470 Physcomitrium patens HOM05D001906 ORTHO05D002083 7.9e-06 56.2 245 26.1
Thecc.05G001500 Theobroma cacao HOM05D001906 ORTHO05D002083 7.9e-06 56.2 240 26.2


User provided reference genes

Program Settings