Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre09.g409250 Chlamydomonas reinhardtii HOM05D003954 ORTHO05D004627 9.0e-284 980.7 1059 100.0
MCO02G294 Micromonas commoda HOM05D003954 ORTHO05D004627 2.5e-23 115.5 141 43.3
PRCOL_00001038 Prasinoderma coloniale HOM05D003954 ORTHO05D004627 2.8e-19 102.1 148 41.9
CDE04G2595 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 3.1e-18 98.6 144 36.1
Medtr6g088695 Medicago truncatula HOM05D003954 ORTHO05D004627 3.1e-18 98.6 156 36.5
Nitab4.5_0005668g0030 Nicotiana tabacum HOM05D003954 ORTHO05D004627 3.1e-18 98.6 148 36.5
Potri.006G164864 Populus trichocarpa HOM05D003954 ORTHO05D004627 4.1e-18 98.2 156 36.5
Carub.0003s3415 Capsella rubella HOM05D003954 ORTHO05D004627 5.3e-18 97.8 156 35.9
Lalb_Chr24g0397311 Lupinus albus HOM05D003954 ORTHO05D004627 5.3e-18 97.8 149 37.6
Phvul.004G176200 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 5.3e-18 97.8 149 37.6
Sc18g0001490 Simmondsia chinensis HOM05D003954 ORTHO05D004627 5.3e-18 97.8 149 38.3
AT2G19880 Arabidopsis thaliana HOM05D003954 ORTHO05D004627 6.9e-18 97.4 156 35.9
EL10Ac8g18378 Beta vulgaris HOM05D003954 ORTHO05D004627 6.9e-18 97.4 149 37.6
BcaB08g34891 Brassica carinata HOM05D003954 ORTHO05D004627 6.9e-18 97.4 156 35.9
BcaC04g22815 Brassica carinata HOM05D003954 ORTHO05D004627 6.9e-18 97.4 156 35.9
C09p15000 Brassica napus HOM05D003954 ORTHO05D004627 6.9e-18 97.4 156 35.9
BolC9t54402H Brassica oleracea HOM05D003954 ORTHO05D004627 6.9e-18 97.4 156 35.9
BraA09t36909Z Brassica rapa HOM05D003954 ORTHO05D004627 6.9e-18 97.4 156 35.9
CARHR110320 Cardamine hirsuta HOM05D003954 ORTHO05D004627 6.9e-18 97.4 156 35.9
Thhalv10001962m.g Eutrema salsugineum HOM05D003954 ORTHO05D004627 6.9e-18 97.4 156 35.9
PSO832G3271 Papaver somniferum HOM05D003954 ORTHO05D004627 6.9e-18 97.4 149 35.6
Psat1g047360 Pisum sativum HOM05D003954 ORTHO05D004627 6.9e-18 97.4 149 36.9
Potri.018G087700 Populus trichocarpa HOM05D003954 ORTHO05D004627 6.9e-18 97.4 156 37.2
TAR626G0478 Trochodendron aralioides HOM05D003954 ORTHO05D004627 6.9e-18 97.4 149 38.3
HPP92_001552 Vanilla planifolia HOM05D003954 ORTHO05D004627 6.9e-18 97.4 158 36.7
GSVIVG01015303001 Vitis vinifera HOM05D003954 ORTHO05D004627 6.9e-18 97.4 149 37.6
AL3G48340 Arabidopsis lyrata HOM05D003954 ORTHO05D004627 9.1e-18 97.1 156 35.9
PSO063G1218 Papaver somniferum HOM05D003954 ORTHO05D004627 9.1e-18 97.1 156 34.6
Sp3g33220 Schrenkiella parvula HOM05D003954 ORTHO05D004627 9.1e-18 97.1 156 35.9
Actinidia09446 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.2e-17 96.7 156 36.5
BcaB03g16776 Brassica carinata HOM05D003954 ORTHO05D004627 1.2e-17 96.7 156 35.3
BcaC07g41232 Brassica carinata HOM05D003954 ORTHO05D004627 1.2e-17 96.7 156 35.9
A09p59090 Brassica napus HOM05D003954 ORTHO05D004627 1.2e-17 96.7 156 35.9
C08p42370 Brassica napus HOM05D003954 ORTHO05D004627 1.2e-17 96.7 156 35.9
BolC8t51799H Brassica oleracea HOM05D003954 ORTHO05D004627 1.2e-17 96.7 156 35.9
BraA09t41292Z Brassica rapa HOM05D003954 ORTHO05D004627 1.2e-17 96.7 156 35.9
HanXRQChr09g0238881 Helianthus annuus HOM05D003954 ORTHO05D004627 1.2e-17 96.7 149 37.6
Sabra18G0076000 Salix brachista HOM05D003954 ORTHO05D004627 1.2e-17 96.7 159 37.1
CiPaw.03G225300 Carya illinoinensis HOM05D003954 ORTHO05D004627 1.5e-17 96.3 149 38.3
ECA240G1631 Erigeron canadensis HOM05D003954 ORTHO05D004627 1.5e-17 96.3 149 37.6
Lj2g0001823 Lotus japonicus HOM05D003954 ORTHO05D004627 1.5e-17 96.3 156 35.9
Nitab4.5_0000566g0060 Nicotiana tabacum HOM05D003954 ORTHO05D004627 1.5e-17 96.3 148 35.8
TWI32G1148 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 1.5e-17 96.3 149 36.9
Aa31LG8G16830 Aethionema arabicum HOM05D003954 ORTHO05D004627 2.0e-17 95.9 156 35.3
Ah.14g083230 Amaranthus hybridus HOM05D003954 ORTHO05D004627 2.0e-17 95.9 149 37.6
Glyma.16G078400 Glycine max HOM05D003954 ORTHO05D004627 2.0e-17 95.9 149 36.9
Gohir.A05G025900 Gossypium hirsutum HOM05D003954 ORTHO05D004627 2.0e-17 95.9 156 34.0
MBI01_g10128_MAGBIO Magnolia biondii HOM05D003954 ORTHO05D004627 2.0e-17 95.9 149 38.3
PSO210G3120 Papaver somniferum HOM05D003954 ORTHO05D004627 2.0e-17 95.9 148 37.8
PSO210G6242 Papaver somniferum HOM05D003954 ORTHO05D004627 2.0e-17 95.9 148 37.8
Hund09103 Selenicereus undatus HOM05D003954 ORTHO05D004627 2.0e-17 95.9 149 36.9
TWI34G0439 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 2.0e-17 95.9 149 36.9
TAR624G0841 Trochodendron aralioides HOM05D003954 ORTHO05D004627 2.0e-17 95.9 149 36.9
Duzib187G1161 Durio zibethinus HOM05D003954 ORTHO05D004627 2.6e-17 95.5 156 36.5
Actinidia39784 Actinidia chinensis HOM05D003954 ORTHO05D004627 3.4e-17 95.1 156 36.5
BcaC06g36652 Brassica carinata HOM05D003954 ORTHO05D004627 3.4e-17 95.1 156 34.6
A07p00800 Brassica napus HOM05D003954 ORTHO05D004627 3.4e-17 95.1 156 34.6
BolC7t40584H Brassica oleracea HOM05D003954 ORTHO05D004627 3.4e-17 95.1 156 34.6
BraA07t27878Z Brassica rapa HOM05D003954 ORTHO05D004627 3.4e-17 95.1 156 34.6
Manes.16G108600 Manihot esculenta HOM05D003954 ORTHO05D004627 3.4e-17 95.1 156 36.5
Oeu064178.1 Olea europaea HOM05D003954 ORTHO05D004627 3.4e-17 95.1 148 36.5
RcHm_v2.0_Chr2g0091861 Rosa chinensis HOM05D003954 ORTHO05D004627 3.4e-17 95.1 159 37.1
Dinv36687 Davidia involucrata HOM05D003954 ORTHO05D004627 4.5e-17 94.7 149 36.9
Migut.J01101 Erythranthe guttata HOM05D003954 ORTHO05D004627 4.5e-17 94.7 148 37.2
FvH4_1g06110 Fragaria vesca HOM05D003954 ORTHO05D004627 4.5e-17 94.7 159 37.1
FAN26G2948 Fragaria x ananassa HOM05D003954 ORTHO05D004627 4.5e-17 94.7 163 35.6
FAN26G2983 Fragaria x ananassa HOM05D003954 ORTHO05D004627 4.5e-17 94.7 163 35.6
Gohir.A06G067200 Gossypium hirsutum HOM05D003954 ORTHO05D004627 4.5e-17 94.7 148 37.2
Gorai.009G027500 Gossypium raimondii HOM05D003954 ORTHO05D004627 4.5e-17 94.7 156 34.0
THA.LOC104804008 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 4.5e-17 94.7 156 35.3
THA.LOC104814571 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 4.5e-17 94.7 156 34.6
CiPaw.04G158000 Carya illinoinensis HOM05D003954 ORTHO05D004627 5.9e-17 94.4 144 38.2
AUR62021404 Chenopodium quinoa HOM05D003954 ORTHO05D004627 5.9e-17 94.4 149 36.2
Gohir.D06G065800 Gossypium hirsutum HOM05D003954 ORTHO05D004627 5.9e-17 94.4 148 37.2
Gorai.010G077100 Gossypium raimondii HOM05D003954 ORTHO05D004627 5.9e-17 94.4 148 37.2
HanXRQChr11g0321631 Helianthus annuus HOM05D003954 ORTHO05D004627 5.9e-17 94.4 149 36.9
Hma1.2p1_0571F.1_g180650 Hydrangea macrophylla HOM05D003954 ORTHO05D004627 5.9e-17 94.4 149 36.9
MD15G1196500 Malus domestica HOM05D003954 ORTHO05D004627 5.9e-17 94.4 159 35.8
Nn8g39063 Nelumbo nucifera HOM05D003954 ORTHO05D004627 5.9e-17 94.4 148 37.2
Peaxi162Scf00665g00340 Petunia axillaris HOM05D003954 ORTHO05D004627 5.9e-17 94.4 146 36.3
Duzib168G1367 Durio zibethinus HOM05D003954 ORTHO05D004627 7.7e-17 94.0 156 35.9
Migut.K00540 Erythranthe guttata HOM05D003954 ORTHO05D004627 7.7e-17 94.0 146 37.0
Prupe.7G219900 Prunus persica HOM05D003954 ORTHO05D004627 7.7e-17 94.0 159 36.5
Sed0027745 Sechium edule HOM05D003954 ORTHO05D004627 7.7e-17 94.0 144 37.5
Sc08g0008010 Simmondsia chinensis HOM05D003954 ORTHO05D004627 7.7e-17 94.0 149 36.9
SGA_v2.0_scaffold62G21557 Striga asiatica HOM05D003954 ORTHO05D004627 7.7e-17 94.0 144 37.5
Thecc.09G100700 Theobroma cacao HOM05D003954 ORTHO05D004627 7.7e-17 94.0 156 35.9
ATR0681G291 Amborella trichopoda HOM05D003954 ORTHO05D004627 1.0e-16 93.6 149 36.9
FAN19G1313 Fragaria x ananassa HOM05D003954 ORTHO05D004627 1.0e-16 93.6 166 36.1
FAN28G0221 Fragaria x ananassa HOM05D003954 ORTHO05D004627 1.0e-16 93.6 166 36.1
Glyma.01G007900 Glycine max HOM05D003954 ORTHO05D004627 1.0e-16 93.6 149 36.2
Lj4g0018527 Lotus japonicus HOM05D003954 ORTHO05D004627 1.0e-16 93.6 150 38.7
Lalb_Chr09g0331531 Lupinus albus HOM05D003954 ORTHO05D004627 1.0e-16 93.6 156 36.5
Aqoxy7G01403 Aquilegia oxysepala HOM05D003954 ORTHO05D004627 1.3e-16 93.2 148 36.5
arahy.Tifrunner.gnm1.ann1.LVXR97 Arachis hypogaea HOM05D003954 ORTHO05D004627 1.3e-16 93.2 149 36.9
arahy.Tifrunner.gnm1.ann1.UV3YSF Arachis hypogaea HOM05D003954 ORTHO05D004627 1.3e-16 93.2 149 36.9
Cfa003181 Carpinus fangiana HOM05D003954 ORTHO05D004627 1.3e-16 93.2 159 36.5
Ciclev10008006m.g Citrus clementina HOM05D003954 ORTHO05D004627 1.3e-16 93.2 160 36.2
CsaV3_1G039780 Cucumis sativus L. HOM05D003954 ORTHO05D004627 1.3e-16 93.2 144 37.5
Lalb_Chr05g0223231 Lupinus albus HOM05D003954 ORTHO05D004627 1.3e-16 93.2 149 37.6
Manes.03G027300 Manihot esculenta HOM05D003954 ORTHO05D004627 1.3e-16 93.2 156 36.5
QL02p041611 Quercus lobata HOM05D003954 ORTHO05D004627 1.3e-16 93.2 159 35.8
SGA_v2.0_scaffold19G08753 Striga asiatica HOM05D003954 ORTHO05D004627 1.3e-16 93.2 144 37.5
vmacro06252 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 1.3e-16 93.2 156 35.9
Atru.chr7.1463 Acer truncatum HOM05D003954 ORTHO05D004627 1.7e-16 92.8 149 36.9
CAN.G1241.30 Capsicum annuum HOM05D003954 ORTHO05D004627 1.7e-16 92.8 148 35.1
AUR62010893 Chenopodium quinoa HOM05D003954 ORTHO05D004627 1.7e-16 92.8 149 35.6
MELO3C015411.2 Cucumis melo HOM05D003954 ORTHO05D004627 1.7e-16 92.8 144 37.5
Dinv41667 Davidia involucrata HOM05D003954 ORTHO05D004627 1.7e-16 92.8 149 36.9
Psat7g016920 Pisum sativum HOM05D003954 ORTHO05D004627 1.7e-16 92.8 148 36.5
TAR633G1204 Trochodendron aralioides HOM05D003954 ORTHO05D004627 1.7e-16 92.8 149 36.2
CSS0001350 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 2.2e-16 92.4 149 36.9
Cpa.g.sc40.95 Carica papaya HOM05D003954 ORTHO05D004627 2.2e-16 92.4 149 36.2
Ca_17364_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 2.2e-16 92.4 149 36.2
Eucgr.C03729 Eucalyptus grandis HOM05D003954 ORTHO05D004627 2.9e-16 92.0 144 36.8
MD02G1065600 Malus domestica HOM05D003954 ORTHO05D004627 2.9e-16 92.0 159 35.8
Medtr8g102500 Medicago truncatula HOM05D003954 ORTHO05D004627 2.9e-16 92.0 148 36.5
Phvul.002G308700 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 2.9e-16 92.0 149 36.2
Solyc12g008490.2 Solanum lycopersicum HOM05D003954 ORTHO05D004627 2.9e-16 92.0 148 35.1
Sopen12g003440 Solanum pennellii HOM05D003954 ORTHO05D004627 2.9e-16 92.0 148 35.1
AagrBONN_evm.TU.Sc2ySwM_228.2751 Anthoceros agrestis HOM05D003954 ORTHO05D004627 3.8e-16 91.7 139 38.1
PGSC0003DMG400000296 Solanum tuberosum HOM05D003954 ORTHO05D004627 3.8e-16 91.7 148 35.1
VMungo0251G2014 Vigna mungo HOM05D003954 ORTHO05D004627 3.8e-16 91.7 149 36.2
arahy.Tifrunner.gnm1.ann1.1X3G68 Arachis hypogaea HOM05D003954 ORTHO05D004627 5.0e-16 91.3 156 34.0
arahy.Tifrunner.gnm1.ann1.KIU7DS Arachis hypogaea HOM05D003954 ORTHO05D004627 5.0e-16 91.3 156 34.0
Glyma.05G226800 Glycine max HOM05D003954 ORTHO05D004627 5.0e-16 91.3 149 36.2
Glyma.08G033600 Glycine max HOM05D003954 ORTHO05D004627 5.0e-16 91.3 149 36.2
Sed0021958 Sechium edule HOM05D003954 ORTHO05D004627 6.5e-16 90.9 156 34.6
TPR.G23479 Trifolium pratense HOM05D003954 ORTHO05D004627 1.4e-15 89.7 148 35.8
MSTRG.19554 Avicennia marina HOM05D003954 ORTHO05D004627 1.9e-15 89.4 144 36.8
CANSAT56G2004 Cannabis sativa HOM05D003954 ORTHO05D004627 2.5e-15 89.0 184 32.6
Cc06_g10470 Coffea canephora HOM05D003954 ORTHO05D004627 2.5e-15 89.0 148 35.8
SMO367G0175 Selaginella moellendorffii HOM05D003954 ORTHO05D004627 2.5e-15 89.0 150 33.3
Gohir.D05G027400 Gossypium hirsutum HOM05D003954 ORTHO05D004627 3.2e-15 88.6 166 32.5
SalBow6G3745 Salvia bowleyana HOM05D003954 ORTHO05D004627 3.2e-15 88.6 144 36.1
Medtr8g102490 Medicago truncatula HOM05D003954 ORTHO05D004627 7.2e-15 87.4 149 32.9
A09p12640 Brassica napus HOM05D003954 ORTHO05D004627 1.2e-14 86.7 135 36.3
Pp3c16_7990 Physcomitrium patens HOM05D003954 ORTHO05D004627 1.6e-14 86.3 164 37.2
Lj4C389T2 Lonicera japonica HOM05D003954 ORTHO05D004627 3.6e-14 85.1 124 37.9
PGR102G1739 Punica granatum HOM05D003954 ORTHO05D004627 1.0e-13 83.6 134 35.1
Actinidia07454 Actinidia chinensis HOM05D003954 ORTHO05D004627 3.9e-13 81.6 189 30.2
Lalb_Chr22g0352551 Lupinus albus HOM05D003954 ORTHO05D004627 1.5e-12 79.7 178 32.0
CDE07G1077 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 2.0e-12 79.3 115 34.8
CAN.G3537.1 Capsicum annuum HOM05D003954 ORTHO05D004627 2.6e-12 79.0 123 35.8
Lsat_1_v5_gn_5_144920 Lactuca sativa HOM05D003954 ORTHO05D004627 5.7e-12 77.8 149 32.9
SEGI_27682 Sequoiadendron giganteum HOM05D003954 ORTHO05D004627 9.7e-12 77.0 109 40.4
FAN23G0884 Fragaria x ananassa HOM05D003954 ORTHO05D004627 2.8e-11 75.5 110 38.2
Rhsim05G0040200 Rhododendron simsii HOM05D003954 ORTHO05D004627 8.2e-11 73.9 110 39.1
VMungo0464G1304 Vigna mungo HOM05D003954 ORTHO05D004627 8.2e-11 73.9 111 37.8
TPR.G21381 Trifolium pratense HOM05D003954 ORTHO05D004627 1.4e-10 73.2 104 37.5
vmacro10852 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 1.4e-10 73.2 110 39.1
Zm00001eb365210 Zea mays HOM05D003954 ORTHO05D004627 1.4e-10 73.2 110 36.4
Lj7A665G29 Lonicera japonica HOM05D003954 ORTHO05D004627 1.8e-10 72.8 97 39.2
COL.COLO4_34744 Corchorus olitorius HOM05D003954 ORTHO05D004627 2.4e-10 72.4 110 38.2
CSS0033107 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 3.1e-10 72.0 110 37.3
Ca_25572_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 3.1e-10 72.0 97 38.1
Mapoly0082s0037 Marchantia polymorpha HOM05D003954 ORTHO05D004627 3.1e-10 72.0 111 37.8
unitig_578.g15920 Utricularia gibba HOM05D003954 ORTHO05D004627 4.1e-10 71.6 106 35.8
Actinidia17525 Actinidia chinensis HOM05D003954 ORTHO05D004627 5.3e-10 71.2 109 38.5
Rhsim03G0236700 Rhododendron simsii HOM05D003954 ORTHO05D004627 9.1e-10 70.5 110 38.2
SHI02691 Sapria himalayana HOM05D003954 ORTHO05D004627 1.2e-09 70.1 104 38.5
DCAR_028664 Daucus carota HOM05D003954 ORTHO05D004627 1.5e-09 69.7 97 37.1
Lsat_1_v5_gn_7_39841 Lactuca sativa HOM05D003954 ORTHO05D004627 1.5e-09 69.7 104 35.6
TPR.G23455 Trifolium pratense HOM05D003954 ORTHO05D004627 2.1e-06 59.3 50 52.0
Zm00001eb132850 Zea mays HOM05D003954 ORTHO05D004627 3.6e-06 58.5 50 52.0


User provided reference genes

Program Settings