Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre09.g405600 Chlamydomonas reinhardtii HOM05D003540 ORTHO05D004012 2.7e-59 231.9 123 100.0
PGSC0003DMG401002119 Solanum tuberosum HOM05D003540 ORTHO05D004012 3.2e-12 75.5 118 39.0
Peaxi162Scf00139g00825 Petunia axillaris HOM05D003540 ORTHO05D004012 7.2e-12 74.3 116 37.9
Oeu024713.1 Olea europaea HOM05D003540 ORTHO05D004012 1.2e-11 73.6 121 36.4
Cc10_g15500 Coffea canephora HOM05D003540 ORTHO05D004012 1.6e-11 73.2 118 37.3
Migut.D01990 Erythranthe guttata HOM05D003540 ORTHO05D004012 2.7e-11 72.4 119 35.3
Mapoly0006s0109 Marchantia polymorpha HOM05D003540 ORTHO05D004012 2.7e-11 72.4 114 39.5
Peaxi162Scf00725g00536 Petunia axillaris HOM05D003540 ORTHO05D004012 3.6e-11 72.0 118 39.0
Solyc04g074940.4 Solanum lycopersicum HOM05D003540 ORTHO05D004012 3.6e-11 72.0 118 37.3
Sopen04g029890 Solanum pennellii HOM05D003540 ORTHO05D004012 3.6e-11 72.0 118 37.3
CAN.G460.5 Capsicum annuum HOM05D003540 ORTHO05D004012 7.9e-11 70.9 118 37.3
DCAR_001735 Daucus carota HOM05D003540 ORTHO05D004012 1.0e-10 70.5 117 34.2
Nitab4.5_0001984g0080 Nicotiana tabacum HOM05D003540 ORTHO05D004012 1.4e-10 70.1 113 38.1
SalBow7G2649 Salvia bowleyana HOM05D003540 ORTHO05D004012 1.4e-10 70.1 121 37.2
Oeu013165.1 Olea europaea HOM05D003540 ORTHO05D004012 1.8e-10 69.7 123 36.6
SGA_v2.0_scaffold5G02749 Striga asiatica HOM05D003540 ORTHO05D004012 1.8e-10 69.7 114 36.0
Aqoxy1G03155 Aquilegia oxysepala HOM05D003540 ORTHO05D004012 2.3e-10 69.3 116 35.3
CSS0040126 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 2.3e-10 69.3 118 36.4
MCO11G826 Micromonas commoda HOM05D003540 ORTHO05D004012 2.3e-10 69.3 113 38.9
SalBow6G0357 Salvia bowleyana HOM05D003540 ORTHO05D004012 2.3e-10 69.3 123 38.2
Thecc.01G093400 Theobroma cacao HOM05D003540 ORTHO05D004012 2.3e-10 69.3 116 33.6
COL.COLO4_27316 Corchorus olitorius HOM05D003540 ORTHO05D004012 3.0e-10 68.9 116 33.6
Solyc02g063075.1 Solanum lycopersicum HOM05D003540 ORTHO05D004012 3.0e-10 68.9 118 36.4
Sopen02g014150 Solanum pennellii HOM05D003540 ORTHO05D004012 3.0e-10 68.9 118 36.4
PGSC0003DMG400024178 Solanum tuberosum HOM05D003540 ORTHO05D004012 3.0e-10 68.9 118 36.4
AT4G14600 Arabidopsis thaliana HOM05D003540 ORTHO05D004012 3.9e-10 68.6 118 33.1
A07p10970 Brassica napus HOM05D003540 ORTHO05D004012 3.9e-10 68.6 118 33.1
BraA07t28888Z Brassica rapa HOM05D003540 ORTHO05D004012 3.9e-10 68.6 118 33.1
CiPaw.01G047900 Carya illinoinensis HOM05D003540 ORTHO05D004012 3.9e-10 68.6 116 34.5
Dinv44828 Davidia involucrata HOM05D003540 ORTHO05D004012 3.9e-10 68.6 116 34.5
AT1G29060 Arabidopsis thaliana HOM05D003540 ORTHO05D004012 5.1e-10 68.2 116 31.9
BcaNung06434 Brassica carinata HOM05D003540 ORTHO05D004012 5.1e-10 68.2 118 33.1
CAN.G1538.2 Capsicum annuum HOM05D003540 ORTHO05D004012 5.1e-10 68.2 118 35.6
Rhsim06G0075200 Rhododendron simsii HOM05D003540 ORTHO05D004012 5.1e-10 68.2 118 35.6
TWI12G0801 Tripterygium wilfordii HOM05D003540 ORTHO05D004012 5.1e-10 68.2 118 33.9
VMungo0647G0300 Vigna mungo HOM05D003540 ORTHO05D004012 5.1e-10 68.2 116 32.8
AL1G42780 Arabidopsis lyrata HOM05D003540 ORTHO05D004012 6.7e-10 67.8 116 31.9
Phvul.008G178700 Phaseolus vulgaris HOM05D003540 ORTHO05D004012 6.7e-10 67.8 116 32.8
vmacro04682 Vaccinium macrocarpon HOM05D003540 ORTHO05D004012 6.7e-10 67.8 123 36.6
AL7G41530 Arabidopsis lyrata HOM05D003540 ORTHO05D004012 8.8e-10 67.4 118 32.2
MSTRG.11484 Avicennia marina HOM05D003540 ORTHO05D004012 8.8e-10 67.4 117 35.9
BcaC06g35396 Brassica carinata HOM05D003540 ORTHO05D004012 8.8e-10 67.4 118 32.2
BraA08t34486Z Brassica rapa HOM05D003540 ORTHO05D004012 8.8e-10 67.4 118 32.2
Thhalv10009065m.g Eutrema salsugineum HOM05D003540 ORTHO05D004012 8.8e-10 67.4 118 32.2
HanXRQChr02g0046851 Helianthus annuus HOM05D003540 ORTHO05D004012 8.8e-10 67.4 118 36.4
Medtr3g099773 Medicago truncatula HOM05D003540 ORTHO05D004012 8.8e-10 67.4 118 33.9
Sp1g25000 Schrenkiella parvula HOM05D003540 ORTHO05D004012 8.8e-10 67.4 118 32.2
BcaB07g32485 Brassica carinata HOM05D003540 ORTHO05D004012 1.1e-09 67.0 118 32.2
C03p75500 Brassica napus HOM05D003540 ORTHO05D004012 1.5e-09 66.6 118 31.4
ECA234G0792 Erigeron canadensis HOM05D003540 ORTHO05D004012 1.5e-09 66.6 118 35.6
Migut.O00140 Erythranthe guttata HOM05D003540 ORTHO05D004012 1.5e-09 66.6 117 35.0
Lalb_Chr10g0102641 Lupinus albus HOM05D003540 ORTHO05D004012 1.5e-09 66.6 114 31.6
BcaB03g13908 Brassica carinata HOM05D003540 ORTHO05D004012 2.0e-09 66.2 118 32.2
BcaNung06754 Brassica carinata HOM05D003540 ORTHO05D004012 2.0e-09 66.2 118 31.4
BolC3t19806H Brassica oleracea HOM05D003540 ORTHO05D004012 2.0e-09 66.2 118 31.4
CARHR028280 Cardamine hirsuta HOM05D003540 ORTHO05D004012 2.0e-09 66.2 118 31.4
Ciclev10002815m.g Citrus clementina HOM05D003540 ORTHO05D004012 2.0e-09 66.2 118 33.9
Glyma.14G179100 Glycine max HOM05D003540 ORTHO05D004012 2.0e-09 66.2 116 31.9
Prupe.1G526600 Prunus persica HOM05D003540 ORTHO05D004012 2.0e-09 66.2 118 32.2
THA.LOC104820588 Tarenaya hassleriana HOM05D003540 ORTHO05D004012 2.0e-09 66.2 118 33.1
Aa31LG5G21170 Aethionema arabicum HOM05D003540 ORTHO05D004012 2.6e-09 65.9 118 30.5
Carub.0001s2726 Capsella rubella HOM05D003540 ORTHO05D004012 2.6e-09 65.9 118 31.4
Sc23g0000530 Simmondsia chinensis HOM05D003540 ORTHO05D004012 2.6e-09 65.9 116 34.5
TWI74G0452 Tripterygium wilfordii HOM05D003540 ORTHO05D004012 2.6e-09 65.9 116 34.5
GSVIVG01009122001 Vitis vinifera HOM05D003540 ORTHO05D004012 2.6e-09 65.9 116 33.6
Aqoxy6G00672 Aquilegia oxysepala HOM05D003540 ORTHO05D004012 3.3e-09 65.5 116 33.6
HanXRQChr08g0226211 Helianthus annuus HOM05D003540 ORTHO05D004012 3.3e-09 65.5 118 35.6
Glyma.02G211500 Glycine max HOM05D003540 ORTHO05D004012 4.4e-09 65.1 116 32.8
Psat2g066800 Pisum sativum HOM05D003540 ORTHO05D004012 4.4e-09 65.1 114 31.6
BcaC05g26921 Brassica carinata HOM05D003540 ORTHO05D004012 5.7e-09 64.7 118 31.4
C05p27740 Brassica napus HOM05D003540 ORTHO05D004012 5.7e-09 64.7 118 31.4
ECA247G1419 Erigeron canadensis HOM05D003540 ORTHO05D004012 7.4e-09 64.3 118 34.7
GSVIVG01003618001 Vitis vinifera HOM05D003540 ORTHO05D004012 7.4e-09 64.3 116 35.3
CSS0047709 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 9.7e-09 63.9 118 35.6
Gohir.A11G205600 Gossypium hirsutum HOM05D003540 ORTHO05D004012 9.7e-09 63.9 116 31.9
Gohir.D11G218000 Gossypium hirsutum HOM05D003540 ORTHO05D004012 9.7e-09 63.9 116 31.9
Lsat_1_v5_gn_1_2480 Lactuca sativa HOM05D003540 ORTHO05D004012 9.7e-09 63.9 102 37.3
Gohir.A06G032664 Gossypium hirsutum HOM05D003540 ORTHO05D004012 1.3e-08 63.5 118 33.9
Gohir.D06G033200 Gossypium hirsutum HOM05D003540 ORTHO05D004012 1.3e-08 63.5 118 33.9
Gorai.010G036600 Gossypium raimondii HOM05D003540 ORTHO05D004012 1.3e-08 63.5 118 33.9
Lj1g0000615 Lotus japonicus HOM05D003540 ORTHO05D004012 1.3e-08 63.5 116 31.0
Phvul.009G034800 Phaseolus vulgaris HOM05D003540 ORTHO05D004012 1.3e-08 63.5 117 32.5
Rhsim07G0209200 Rhododendron simsii HOM05D003540 ORTHO05D004012 1.3e-08 63.5 118 36.4
CiPaw.07G169400 Carya illinoinensis HOM05D003540 ORTHO05D004012 1.7e-08 63.2 118 33.1
Zm00001eb325480 Zea mays HOM05D003540 ORTHO05D004012 1.7e-08 63.2 104 34.6
QL09p016915 Quercus lobata HOM05D003540 ORTHO05D004012 2.2e-08 62.8 118 35.6
EL10Ac3g06094 Beta vulgaris HOM05D003540 ORTHO05D004012 2.8e-08 62.4 118 33.1
COL.COLO4_11964 Corchorus olitorius HOM05D003540 ORTHO05D004012 2.8e-08 62.4 118 33.1
Gorai.007G236000 Gossypium raimondii HOM05D003540 ORTHO05D004012 2.8e-08 62.4 116 31.0
Lalb_Chr23g0270301 Lupinus albus HOM05D003540 ORTHO05D004012 2.8e-08 62.4 116 29.3
MBI02_g18294_MAGBIO Magnolia biondii HOM05D003540 ORTHO05D004012 2.8e-08 62.4 114 33.3
Os03g0187700 Oryza sativa ssp. japonica HOM05D003540 ORTHO05D004012 2.8e-08 62.4 118 30.5
THA.LOC104812634 Tarenaya hassleriana HOM05D003540 ORTHO05D004012 2.8e-08 62.4 118 31.4
Hma1.2p1_0961F.1_g241695 Hydrangea macrophylla HOM05D003540 ORTHO05D004012 3.7e-08 62.0 115 32.2
Hma1.2p1_0961F.1_g241710 Hydrangea macrophylla HOM05D003540 ORTHO05D004012 3.7e-08 62.0 115 32.2
Cpa.g.sc36.201 Carica papaya HOM05D003540 ORTHO05D004012 4.8e-08 61.6 118 31.4
Zm00001eb107620 Zea mays HOM05D003540 ORTHO05D004012 4.8e-08 61.6 98 34.7
Lj1g0025059 Lotus japonicus HOM05D003540 ORTHO05D004012 6.3e-08 61.2 117 31.6
Manes.18G062100 Manihot esculenta HOM05D003540 ORTHO05D004012 6.3e-08 61.2 118 33.1
Potri.005G159600 Populus trichocarpa HOM05D003540 ORTHO05D004012 6.3e-08 61.2 118 31.4
Sed0022834 Sechium edule HOM05D003540 ORTHO05D004012 6.3e-08 61.2 118 32.2
SGA_v2.0_scaffold37G14731 Striga asiatica HOM05D003540 ORTHO05D004012 6.3e-08 61.2 114 33.3
TWI56G0839 Tripterygium wilfordii HOM05D003540 ORTHO05D004012 6.3e-08 61.2 89 34.8
Ah.05g170560 Amaranthus hybridus HOM05D003540 ORTHO05D004012 8.2e-08 60.8 116 33.6
Glyma.06G098800 Glycine max HOM05D003540 ORTHO05D004012 8.2e-08 60.8 117 32.5
Duzib093G0958 Durio zibethinus HOM05D003540 ORTHO05D004012 1.1e-07 60.5 116 32.8
Duzib116G0544 Durio zibethinus HOM05D003540 ORTHO05D004012 1.4e-07 60.1 118 33.1
Lalb_Chr23g0270201 Lupinus albus HOM05D003540 ORTHO05D004012 1.4e-07 60.1 113 29.2
Medtr5g065550 Medicago truncatula HOM05D003540 ORTHO05D004012 1.4e-07 60.1 114 30.7
Sc01g0000960 Simmondsia chinensis HOM05D003540 ORTHO05D004012 1.4e-07 60.1 113 32.7
Thecc.08G066000 Theobroma cacao HOM05D003540 ORTHO05D004012 1.4e-07 60.1 118 32.2
TAR625G0842 Trochodendron aralioides HOM05D003540 ORTHO05D004012 1.4e-07 60.1 116 31.9
CSS0021893 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 1.8e-07 59.7 107 33.6
MBI06_g18789_MAGBIO Magnolia biondii HOM05D003540 ORTHO05D004012 1.8e-07 59.7 114 32.5
Potri.002G102400 Populus trichocarpa HOM05D003540 ORTHO05D004012 1.8e-07 59.7 118 30.5
CANSAT25G0001 Cannabis sativa HOM05D003540 ORTHO05D004012 2.4e-07 59.3 118 31.4
SMO141G0171 Selaginella moellendorffii HOM05D003540 ORTHO05D004012 2.4e-07 59.3 98 34.7
Os07g0577900 Oryza sativa ssp. japonica HOM05D003540 ORTHO05D004012 3.1e-07 58.9 104 33.7
Sed0006262 Sechium edule HOM05D003540 ORTHO05D004012 3.1e-07 58.9 116 33.6
Psat5g050000 Pisum sativum HOM05D003540 ORTHO05D004012 4.1e-07 58.5 116 28.4
RcHm_v2.0_Chr7g0237701 Rosa chinensis HOM05D003540 ORTHO05D004012 4.1e-07 58.5 98 32.7
MELO3C003542.2 Cucumis melo HOM05D003540 ORTHO05D004012 7.0e-07 57.8 118 31.4
Duzib041G0585 Durio zibethinus HOM05D003540 ORTHO05D004012 7.0e-07 57.8 118 32.2
FAN13G2229 Fragaria x ananassa HOM05D003540 ORTHO05D004012 7.0e-07 57.8 97 32.0
MD15G1380400 Malus domestica HOM05D003540 ORTHO05D004012 9.1e-07 57.4 119 28.6
Manes.02G147700 Manihot esculenta HOM05D003540 ORTHO05D004012 9.1e-07 57.4 116 31.9
Sabra05G0121300 Salix brachista HOM05D003540 ORTHO05D004012 9.1e-07 57.4 118 29.7
FAN18G2789 Fragaria x ananassa HOM05D003540 ORTHO05D004012 1.2e-06 57.0 97 32.0
Nn1g05484 Nelumbo nucifera HOM05D003540 ORTHO05D004012 1.2e-06 57.0 108 33.3
PGR031G1594 Punica granatum HOM05D003540 ORTHO05D004012 1.2e-06 57.0 116 29.3
CSS0040517 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 1.5e-06 56.6 105 33.3
FvH4_5g35960 Fragaria vesca HOM05D003540 ORTHO05D004012 1.5e-06 56.6 97 32.0
FAN08G1899 Fragaria x ananassa HOM05D003540 ORTHO05D004012 1.5e-06 56.6 97 32.0
Lsat_1_v5_gn_6_105381 Lactuca sativa HOM05D003540 ORTHO05D004012 2.0e-06 56.2 108 33.3
Eucgr.F00400 Eucalyptus grandis HOM05D003540 ORTHO05D004012 2.6e-06 55.8 118 30.5
Pp3c7_10130 Physcomitrium patens HOM05D003540 ORTHO05D004012 2.6e-06 55.8 104 32.7
TPR.G6376 Trifolium pratense HOM05D003540 ORTHO05D004012 3.4e-06 55.5 118 28.8
Actinidia29606 Actinidia chinensis HOM05D003540 ORTHO05D004012 4.5e-06 55.1 96 35.4
MSTRG.9688 Avicennia marina HOM05D003540 ORTHO05D004012 5.9e-06 54.7 104 32.7
AagrBONN_evm.TU.Sc2ySwM_228.2961 Anthoceros agrestis HOM05D003540 ORTHO05D004012 7.7e-06 54.3 78 39.7


User provided reference genes

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