Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre09.g404350 Chlamydomonas reinhardtii HOM05D000329 ORTHO05D005330 0.0e+00 2215.3 1428 100.0
CBR_g8586 Chara braunii HOM05D000329 ORTHO05D005330 1.1e-82 313.2 1465 27.1
Mapoly0091s0014 Marchantia polymorpha HOM05D000329 ORTHO05D005330 2.4e-82 312.0 1452 27.1
AagrBONN_evm.TU.Sc2ySwM_228.3774 Anthoceros agrestis HOM05D000329 ORTHO05D005330 4.2e-79 301.2 1346 27.7
SMO356G0150 Selaginella moellendorffii HOM05D000329 ORTHO05D005330 1.5e-76 292.7 1354 25.8
Pp3c6_27570 Physcomitrium patens HOM05D000329 ORTHO05D005330 2.4e-74 285.4 1451 26.9
ATR0736G139 Amborella trichopoda HOM05D000329 ORTHO05D005330 2.0e-60 239.2 1380 24.7
Aa31LG5G14930 Aethionema arabicum HOM05D000329 ORTHO05D005330 4.8e-59 234.6 1450 24.6
Actinidia39997 Actinidia chinensis HOM05D000329 ORTHO05D005330 8.5e-56 223.8 1437 24.1
MSTRG.316 Avicennia marina HOM05D000329 ORTHO05D005330 1.6e-54 219.5 1384 24.5
Sp3g03340 Schrenkiella parvula HOM05D000329 ORTHO05D005330 2.1e-54 219.2 1383 24.2
Nn1g02807 Nelumbo nucifera HOM05D000329 ORTHO05D005330 1.0e-53 216.9 1441 23.9
PSO063G2047 Papaver somniferum HOM05D000329 ORTHO05D005330 3.0e-53 215.3 1431 24.0
Gorai.004G249100 Gossypium raimondii HOM05D000329 ORTHO05D005330 5.2e-53 214.5 1443 23.9
THA.LOC104827286 Tarenaya hassleriana HOM05D000329 ORTHO05D005330 6.7e-53 214.2 1355 24.6
Os10g0477000 Oryza sativa ssp. japonica HOM05D000329 ORTHO05D005330 8.8e-53 213.8 1383 24.4
Manes.09G147900 Manihot esculenta HOM05D000329 ORTHO05D005330 1.5e-52 213.0 1377 24.0
Gohir.A08G217300 Gossypium hirsutum HOM05D000329 ORTHO05D005330 5.7e-52 211.1 1443 23.8
Lj1g0020261 Lotus japonicus HOM05D000329 ORTHO05D005330 1.7e-51 209.5 1439 23.3
Carub.0003s0365 Capsella rubella HOM05D000329 ORTHO05D005330 3.7e-51 208.4 1087 25.6
Ciclev10018568m.g Citrus clementina HOM05D000329 ORTHO05D005330 4.8e-51 208.0 1440 23.8
TAR636G0200 Trochodendron aralioides HOM05D000329 ORTHO05D005330 4.8e-51 208.0 1445 23.5
COL.COLO4_15478 Corchorus olitorius HOM05D000329 ORTHO05D005330 6.3e-51 207.6 1442 23.7
Zm00001eb045870 Zea mays HOM05D000329 ORTHO05D005330 6.3e-51 207.6 1451 23.8
C05p62760 Brassica napus HOM05D000329 ORTHO05D005330 1.4e-50 206.5 1088 25.6
MD04G1230100 Malus domestica HOM05D000329 ORTHO05D005330 1.4e-50 206.5 1442 23.3
PSO017G0764 Papaver somniferum HOM05D000329 ORTHO05D005330 1.4e-50 206.5 1371 24.2
BolC5t34929H Brassica oleracea HOM05D000329 ORTHO05D005330 1.8e-50 206.1 1088 25.6
Potri.019G019100 Populus trichocarpa HOM05D000329 ORTHO05D005330 1.8e-50 206.1 1440 23.9
Aqoxy2G03671 Aquilegia oxysepala HOM05D000329 ORTHO05D005330 2.4e-50 205.7 1440 23.5
Atru.chr2.977 Acer truncatum HOM05D000329 ORTHO05D005330 5.3e-50 204.5 1438 23.7
AT3G04490 Arabidopsis thaliana HOM05D000329 ORTHO05D005330 9.1e-50 203.8 1087 25.5
AL3G14470 Arabidopsis lyrata HOM05D000329 ORTHO05D005330 1.2e-49 203.4 1081 25.4
A05p42990 Brassica napus HOM05D000329 ORTHO05D005330 1.6e-49 203.0 1092 25.7
Phvul.006G105600 Phaseolus vulgaris HOM05D000329 ORTHO05D005330 2.0e-49 202.6 1379 23.5
BcaC05g30221 Brassica carinata HOM05D000329 ORTHO05D005330 7.7e-49 200.7 1088 25.5
HanXRQChr13g0397671 Helianthus annuus HOM05D000329 ORTHO05D005330 7.7e-49 200.7 1218 23.9
BraA05t23043Z Brassica rapa HOM05D000329 ORTHO05D005330 1.3e-48 199.9 1097 25.7
Atru.chr2.952 Acer truncatum HOM05D000329 ORTHO05D005330 1.7e-48 199.5 1350 24.0
CANSAT54G2567 Cannabis sativa HOM05D000329 ORTHO05D005330 3.8e-48 198.4 1438 23.6
Thecc.05G271000 Theobroma cacao HOM05D000329 ORTHO05D005330 8.5e-48 197.2 1387 23.9
Glyma.03G251100 Glycine max HOM05D000329 ORTHO05D005330 1.1e-47 196.8 1355 23.2
Duzib106G0267 Durio zibethinus HOM05D000329 ORTHO05D005330 1.5e-47 196.4 1379 23.3
FvH4_6g01900 Fragaria vesca HOM05D000329 ORTHO05D005330 1.5e-47 196.4 1385 23.0
Sc09g0004230 Simmondsia chinensis HOM05D000329 ORTHO05D005330 1.9e-47 196.1 1086 24.9
MELO3C010156.2 Cucumis melo HOM05D000329 ORTHO05D005330 4.2e-47 194.9 1384 24.8
FAN05G0322 Fragaria x ananassa HOM05D000329 ORTHO05D005330 4.2e-47 194.9 1385 23.0
TWI56G0006 Tripterygium wilfordii HOM05D000329 ORTHO05D005330 4.2e-47 194.9 1382 23.4
RcHm_v2.0_Chr3g0449631 Rosa chinensis HOM05D000329 ORTHO05D005330 5.5e-47 194.5 1385 23.2
ECA238G1533 Erigeron canadensis HOM05D000329 ORTHO05D005330 7.2e-47 194.1 1086 24.5
CiPaw.08G118500 Carya illinoinensis HOM05D000329 ORTHO05D005330 9.4e-47 193.7 1382 24.2
Peaxi162Scf00304g10137 Petunia axillaris HOM05D000329 ORTHO05D005330 9.4e-47 193.7 1368 23.6
Migut.F01542 Erythranthe guttata HOM05D000329 ORTHO05D005330 1.2e-46 193.4 1356 24.0
Ca_09463_v3 Cicer arietinum L. HOM05D000329 ORTHO05D005330 2.1e-46 192.6 1438 22.8
Thhalv10019943m.g Eutrema salsugineum HOM05D000329 ORTHO05D005330 2.7e-46 192.2 930 26.2
Cc02_g08850 Coffea canephora HOM05D000329 ORTHO05D005330 4.7e-46 191.4 1378 23.5
Lsat_1_v5_gn_2_16061 Lactuca sativa HOM05D000329 ORTHO05D005330 4.7e-46 191.4 1377 22.7
PGR004G1157 Punica granatum HOM05D000329 ORTHO05D005330 1.0e-45 190.3 1451 23.2
Gohir.D08G234300 Gossypium hirsutum HOM05D000329 ORTHO05D005330 1.8e-45 189.5 918 26.4
Sabra19G0031800 Salix brachista HOM05D000329 ORTHO05D005330 2.3e-45 189.1 1417 22.9
TPR.G6911 Trifolium pratense HOM05D000329 ORTHO05D005330 4.0e-45 188.3 1437 22.7
CsaV3_1G045290 Cucumis sativus L. HOM05D000329 ORTHO05D005330 8.8e-45 187.2 1365 24.5
Cfa006349 Carpinus fangiana HOM05D000329 ORTHO05D005330 7.5e-44 184.1 1449 23.5
FAN14G5238 Fragaria x ananassa HOM05D000329 ORTHO05D005330 7.5e-44 184.1 1416 22.7
arahy.Tifrunner.gnm1.ann1.LXR25M Arachis hypogaea HOM05D000329 ORTHO05D005330 9.7e-44 183.7 1077 24.0
FAN09G2051 Fragaria x ananassa HOM05D000329 ORTHO05D005330 9.7e-44 183.7 1416 22.6
Lj2C42G9 Lonicera japonica HOM05D000329 ORTHO05D005330 1.8e-42 179.5 1443 23.1
FAN05G4177 Fragaria x ananassa HOM05D000329 ORTHO05D005330 4.1e-42 178.3 1346 22.8
Psat3g006480 Pisum sativum HOM05D000329 ORTHO05D005330 5.3e-42 177.9 1077 23.8
SGA_v2.0_scaffold50G18503 Striga asiatica HOM05D000329 ORTHO05D005330 1.6e-41 176.4 1472 23.4
Medtr7g115710 Medicago truncatula HOM05D000329 ORTHO05D005330 2.7e-41 175.6 1354 22.2
GSVIVG01023507001 Vitis vinifera HOM05D000329 ORTHO05D005330 1.0e-40 173.7 1011 25.5
Duzib177G0982 Durio zibethinus HOM05D000329 ORTHO05D005330 3.8e-40 171.8 1443 22.7
SMO002G0004 Selaginella moellendorffii HOM05D000329 ORTHO05D005330 1.1e-39 170.2 761 25.6
CSS0019027 Camellia sinensis var. sinensis HOM05D000329 ORTHO05D005330 3.2e-39 168.7 916 25.2
Dinv06015 Davidia involucrata HOM05D000329 ORTHO05D005330 7.2e-39 167.5 960 24.4
Lalb_Chr18g0044041 Lupinus albus HOM05D000329 ORTHO05D005330 1.2e-38 166.8 1006 24.6
vmacro19990 Vaccinium macrocarpon HOM05D000329 ORTHO05D005330 2.1e-38 166.0 1508 21.9
CSS0000359 Camellia sinensis var. sinensis HOM05D000329 ORTHO05D005330 1.4e-37 163.3 916 25.5
Oeu014525.1 Olea europaea HOM05D000329 ORTHO05D005330 1.8e-37 162.9 1082 23.9
Prupe.7G018700 Prunus persica HOM05D000329 ORTHO05D005330 3.0e-37 162.2 918 25.3
AUR62004837 Chenopodium quinoa HOM05D000329 ORTHO05D005330 5.7e-36 157.9 1026 23.7
Ah.06g191840 Amaranthus hybridus HOM05D000329 ORTHO05D005330 9.8e-36 157.1 1010 24.2
BcaC05g30194 Brassica carinata HOM05D000329 ORTHO05D005330 9.8e-36 157.1 1090 24.0
Glyma.19G248400 Glycine max HOM05D000329 ORTHO05D005330 2.2e-35 156.0 1253 22.7
AUR62040926 Chenopodium quinoa HOM05D000329 ORTHO05D005330 3.7e-35 155.2 1372 22.3
Sopen12g010860 Solanum pennellii HOM05D000329 ORTHO05D005330 4.9e-35 154.8 1253 22.6
FAN14G2464 Fragaria x ananassa HOM05D000329 ORTHO05D005330 1.4e-34 153.3 1431 21.7
BcaC05g29938 Brassica carinata HOM05D000329 ORTHO05D005330 3.8e-32 145.2 1091 24.1
CARHR078650 Cardamine hirsuta HOM05D000329 ORTHO05D005330 3.4e-28 132.1 1100 23.2
QL03p030482 Quercus lobata HOM05D000329 ORTHO05D005330 5.7e-28 131.3 722 25.8
Eucgr.H04230 Eucalyptus grandis HOM05D000329 ORTHO05D005330 1.3e-27 130.2 958 23.2
VMungo0540G0180 Vigna mungo HOM05D000329 ORTHO05D005330 2.3e-24 119.4 842 23.3
Solyc12g027580.3 Solanum lycopersicum HOM05D000329 ORTHO05D005330 8.0e-22 110.9 921 23.0
Sed0007400 Sechium edule HOM05D000329 ORTHO05D005330 1.4e-21 110.2 1019 23.7
Cpa.g.sc162.46 Carica papaya HOM05D000329 ORTHO05D005330 3.7e-19 102.1 881 23.2
DCAR_000979 Daucus carota HOM05D000329 ORTHO05D005330 1.9e-18 99.8 389 26.5
EL10Ac4g09016 Beta vulgaris HOM05D000329 ORTHO05D005330 7.0e-18 97.8 1100 20.9
HPP92_025585 Vanilla planifolia HOM05D000329 ORTHO05D005330 9.2e-18 97.4 659 24.7
PRCOL_00003022 Prasinoderma coloniale HOM05D000329 ORTHO05D005330 6.0e-17 94.7 1421 24.5
unitig_46.g18343 Utricularia gibba HOM05D000329 ORTHO05D005330 2.1e-14 86.3 171 33.3
CDE08G1167 Ceratophyllum demersum HOM05D000329 ORTHO05D005330 1.4e-13 83.6 226 32.7
QL03p030502 Quercus lobata HOM05D000329 ORTHO05D005330 8.9e-13 80.9 649 22.0
ClCG06G009520 Citrullus lanatus HOM05D000329 ORTHO05D005330 1.5e-12 80.1 630 22.2
Haze_04432 Corylus avellana HOM05D000329 ORTHO05D005330 1.5e-12 80.1 321 29.6
Nitab4.5_0000432g0080 Nicotiana tabacum HOM05D000329 ORTHO05D005330 3.7e-11 75.5 202 29.2
Nitab4.5_0003285g0080 Nicotiana tabacum HOM05D000329 ORTHO05D005330 1.6e-09 70.1 244 26.6
CDE08G1568 Ceratophyllum demersum HOM05D000329 ORTHO05D005330 2.5e-07 62.8 318 26.7
ClCG06G009450 Citrullus lanatus HOM05D000329 ORTHO05D005330 4.7e-06 58.5 87 37.9
Sed0005472 Sechium edule HOM05D000329 ORTHO05D005330 8.1e-06 57.8 137 28.5


User provided reference genes

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