Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre09.g401700 Chlamydomonas reinhardtii HOM05D004183 ORTHO05D005022 0.0e+00 1742.6 1212 100.0
MCO15G220 Micromonas commoda HOM05D004183 ORTHO05D005022 3.5e-66 258.1 1229 28.0
Mapoly0026s0116 Marchantia polymorpha HOM05D004183 ORTHO05D005022 3.8e-65 254.6 943 31.8
Ah.09g232030 Amaranthus hybridus HOM05D004183 ORTHO05D005022 4.2e-64 251.1 510 33.1
MD10G1031900 Malus domestica HOM05D004183 ORTHO05D005022 3.6e-63 248.1 497 32.8
GSVIVG01000237001 Vitis vinifera HOM05D004183 ORTHO05D005022 8.0e-63 246.9 508 33.7
Rhsim03G0265100 Rhododendron simsii HOM05D004183 ORTHO05D005022 1.0e-62 246.5 530 33.6
Sc24g0002700 Simmondsia chinensis HOM05D004183 ORTHO05D005022 1.8e-62 245.7 519 33.3
Thhalv10012633m.g Eutrema salsugineum HOM05D004183 ORTHO05D005022 6.7e-62 243.8 499 34.7
Glyma.04G204500 Glycine max HOM05D004183 ORTHO05D005022 1.1e-61 243.0 512 32.8
ATR0810G041 Amborella trichopoda HOM05D004183 ORTHO05D005022 2.6e-61 241.9 507 32.0
THA.LOC104827224 Tarenaya hassleriana HOM05D004183 ORTHO05D005022 5.7e-61 240.7 503 34.2
Nitab4.5_0010834g0010 Nicotiana tabacum HOM05D004183 ORTHO05D005022 1.7e-60 239.2 511 32.3
Nn5g26963 Nelumbo nucifera HOM05D004183 ORTHO05D005022 2.8e-60 238.4 506 32.2
Phvul.009G192300 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 3.7e-60 238.0 499 33.3
AL6G28330 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 4.8e-60 237.7 499 33.5
CBR_g19343 Chara braunii HOM05D004183 ORTHO05D005022 6.3e-60 237.3 612 31.5
Ca_17037_v3 Cicer arietinum L. HOM05D004183 ORTHO05D005022 6.3e-60 237.3 509 31.8
Lalb_Chr08g0237701 Lupinus albus HOM05D004183 ORTHO05D005022 6.3e-60 237.3 519 31.6
BcaB08g36793 Brassica carinata HOM05D004183 ORTHO05D005022 1.1e-59 236.5 497 33.4
Haze_19348 Corylus avellana HOM05D004183 ORTHO05D005022 1.4e-59 236.1 534 31.5
Oeu006040.1 Olea europaea HOM05D004183 ORTHO05D005022 1.8e-59 235.7 509 32.4
Lj1g0005856 Lotus japonicus HOM05D004183 ORTHO05D005022 2.4e-59 235.3 510 31.8
CSS0046717 Camellia sinensis var. sinensis HOM05D004183 ORTHO05D005022 3.1e-59 235.0 491 33.6
Psat5g056520 Pisum sativum HOM05D004183 ORTHO05D005022 7.0e-59 233.8 503 32.2
Thecc.07G183400 Theobroma cacao HOM05D004183 ORTHO05D005022 7.0e-59 233.8 505 32.5
CDE11G0898 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 1.6e-58 232.6 505 31.7
PGR102G1375 Punica granatum HOM05D004183 ORTHO05D005022 1.6e-58 232.6 509 31.4
Carub.0006s1546 Capsella rubella HOM05D004183 ORTHO05D005022 2.0e-58 232.3 499 33.7
ECA246G4622 Erigeron canadensis HOM05D004183 ORTHO05D005022 2.0e-58 232.3 494 32.2
BolC3t13450H Brassica oleracea HOM05D004183 ORTHO05D005022 2.6e-58 231.9 499 33.3
Phvul.009G160200 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 2.6e-58 231.9 512 32.2
Sp6g26960 Schrenkiella parvula HOM05D004183 ORTHO05D005022 2.6e-58 231.9 499 33.7
A03p08250 Brassica napus HOM05D004183 ORTHO05D005022 3.5e-58 231.5 502 33.7
Actinidia11211 Actinidia chinensis HOM05D004183 ORTHO05D005022 4.5e-58 231.1 620 30.5
EL10Ac8g19353 Beta vulgaris HOM05D004183 ORTHO05D005022 4.5e-58 231.1 501 32.9
Duzib268G1261 Durio zibethinus HOM05D004183 ORTHO05D005022 4.5e-58 231.1 504 31.9
CANSAT78G1267 Cannabis sativa HOM05D004183 ORTHO05D005022 5.9e-58 230.7 511 31.9
Eucgr.H05055 Eucalyptus grandis HOM05D004183 ORTHO05D005022 7.7e-58 230.3 511 32.5
Sed0016560 Sechium edule HOM05D004183 ORTHO05D005022 7.7e-58 230.3 497 31.4
Migut.N00455 Erythranthe guttata HOM05D004183 ORTHO05D005022 1.3e-57 229.6 500 32.0
TPR.G7801 Trifolium pratense HOM05D004183 ORTHO05D005022 1.3e-57 229.6 806 25.9
A10p22130 Brassica napus HOM05D004183 ORTHO05D005022 1.7e-57 229.2 500 32.4
C09p59920 Brassica napus HOM05D004183 ORTHO05D005022 2.2e-57 228.8 497 33.0
Lsat_1_v5_gn_3_54960 Lactuca sativa HOM05D004183 ORTHO05D005022 2.2e-57 228.8 494 32.0
BraA10t44272Z Brassica rapa HOM05D004183 ORTHO05D005022 2.9e-57 228.4 498 32.7
CARHR195930 Cardamine hirsuta HOM05D004183 ORTHO05D005022 2.9e-57 228.4 499 33.1
Medtr3g098060 Medicago truncatula HOM05D004183 ORTHO05D005022 2.9e-57 228.4 508 31.3
Solyc07g008760.4 Solanum lycopersicum HOM05D004183 ORTHO05D005022 3.8e-57 228.0 499 31.9
HanXRQChr15g0484541 Helianthus annuus HOM05D004183 ORTHO05D005022 5.0e-57 227.6 494 31.2
Aa31LG11G12400 Aethionema arabicum HOM05D004183 ORTHO05D005022 8.5e-57 226.9 494 33.0
C03p09610 Brassica napus HOM05D004183 ORTHO05D005022 8.5e-57 226.9 502 33.1
Prupe.2G030300 Prunus persica HOM05D004183 ORTHO05D005022 8.5e-57 226.9 499 31.5
RcHm_v2.0_Chr1g0321111 Rosa chinensis HOM05D004183 ORTHO05D005022 8.5e-57 226.9 512 31.1
MELO3C019211.2 Cucumis melo HOM05D004183 ORTHO05D005022 1.1e-56 226.5 511 31.1
FvH4_7g02460 Fragaria vesca HOM05D004183 ORTHO05D005022 1.1e-56 226.5 504 30.6
CsaV3_2G035420 Cucumis sativus L. HOM05D004183 ORTHO05D005022 1.5e-56 226.1 511 31.5
Sopen07g004700 Solanum pennellii HOM05D004183 ORTHO05D005022 1.5e-56 226.1 507 31.8
Dinv04533 Davidia involucrata HOM05D004183 ORTHO05D005022 4.2e-56 224.6 815 25.9
FAN06G5080 Fragaria x ananassa HOM05D004183 ORTHO05D005022 5.5e-56 224.2 504 30.4
Duzib106G0093 Durio zibethinus HOM05D004183 ORTHO05D005022 7.2e-56 223.8 509 31.4
BolC9t58828H Brassica oleracea HOM05D004183 ORTHO05D005022 9.4e-56 223.4 500 32.8
AT5G17270 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 1.2e-55 223.0 440 33.9
BcaB01g05214 Brassica carinata HOM05D004183 ORTHO05D005022 1.6e-55 222.6 502 32.7
AT5G37130 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 3.6e-55 221.5 499 33.3
ClCG06G014020 Citrullus lanatus HOM05D004183 ORTHO05D005022 4.7e-55 221.1 521 31.5
Gohir.A01G099200 Gossypium hirsutum HOM05D004183 ORTHO05D005022 8.0e-55 220.3 504 31.0
CAN.G333.6 Capsicum annuum HOM05D004183 ORTHO05D005022 1.0e-54 219.9 490 31.8
Manes.10G067101 Manihot esculenta HOM05D004183 ORTHO05D005022 1.0e-54 219.9 438 33.1
Aqoxy7G00086 Aquilegia oxysepala HOM05D004183 ORTHO05D005022 1.4e-54 219.5 509 31.4
Gorai.002G109500 Gossypium raimondii HOM05D004183 ORTHO05D005022 1.4e-54 219.5 504 31.0
AL6G28350 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 4.0e-54 218.0 499 32.9
Cc03_g10770 Coffea canephora HOM05D004183 ORTHO05D005022 4.0e-54 218.0 509 31.2
FAN03G0165 Fragaria x ananassa HOM05D004183 ORTHO05D005022 1.2e-53 216.5 504 30.4
Os07g0455100 Oryza sativa ssp. japonica HOM05D004183 ORTHO05D005022 1.2e-53 216.5 507 31.8
Potri.004G080800 Populus trichocarpa HOM05D004183 ORTHO05D005022 1.2e-53 216.5 505 32.7
Atru.chr3.3380 Acer truncatum HOM05D004183 ORTHO05D005022 4.4e-53 214.5 510 31.2
AagrBONN_evm.TU.Sc2ySwM_344.1225 Anthoceros agrestis HOM05D004183 ORTHO05D005022 4.4e-53 214.5 492 31.7
TWI75G1732 Tripterygium wilfordii HOM05D004183 ORTHO05D005022 4.4e-53 214.5 512 31.2
Nitab4.5_0000617g0040 Nicotiana tabacum HOM05D004183 ORTHO05D005022 9.8e-53 213.4 489 31.5
arahy.Tifrunner.gnm1.ann1.RUK03S Arachis hypogaea HOM05D004183 ORTHO05D005022 2.8e-52 211.8 427 32.3
SGA_v2.0_scaffold7G03721 Striga asiatica HOM05D004183 ORTHO05D005022 4.8e-52 211.1 511 30.7
Peaxi162Scf01600g00023 Petunia axillaris HOM05D004183 ORTHO05D005022 8.3e-52 210.3 507 32.0
arahy.Tifrunner.gnm1.ann1.4S33SI Arachis hypogaea HOM05D004183 ORTHO05D005022 1.1e-51 209.9 427 31.9
Zm00001eb096590 Zea mays HOM05D004183 ORTHO05D005022 9.1e-51 206.8 794 28.7
DCAR_009033 Daucus carota HOM05D004183 ORTHO05D005022 1.2e-50 206.5 487 30.4
FAN10G3177 Fragaria x ananassa HOM05D004183 ORTHO05D005022 3.5e-50 204.9 504 29.4
Gohir.D01G083800 Gossypium hirsutum HOM05D004183 ORTHO05D005022 1.7e-49 202.6 505 29.9
COL.COLO4_19761 Corchorus olitorius HOM05D004183 ORTHO05D005022 1.1e-48 199.9 426 32.2
unitig_8.g5004 Utricularia gibba HOM05D004183 ORTHO05D005022 4.2e-48 198.0 465 30.1
AUR62027369 Chenopodium quinoa HOM05D004183 ORTHO05D005022 5.5e-48 197.6 514 30.4
PSO063G6994 Papaver somniferum HOM05D004183 ORTHO05D005022 7.2e-48 197.2 629 27.3
Sabra04G0053600 Salix brachista HOM05D004183 ORTHO05D005022 7.2e-48 197.2 532 31.2
PSO782G1025 Papaver somniferum HOM05D004183 ORTHO05D005022 1.4e-46 193.0 645 27.4
MSTRG.24596 Avicennia marina HOM05D004183 ORTHO05D005022 5.2e-46 191.0 481 29.9
CiPaw.15G184500 Carya illinoinensis HOM05D004183 ORTHO05D005022 3.4e-45 188.3 269 39.0
vmacro06007 Vaccinium macrocarpon HOM05D004183 ORTHO05D005022 1.3e-44 186.4 547 30.9
RcHm_v2.0_Chr1g0320601 Rosa chinensis HOM05D004183 ORTHO05D005022 2.8e-44 185.3 454 29.3
Ciclev10033903m.g Citrus clementina HOM05D004183 ORTHO05D005022 5.4e-43 181.0 330 35.5
BraA03t10145Z Brassica rapa HOM05D004183 ORTHO05D005022 4.5e-42 177.9 502 29.3
Pp3c1_12830 Physcomitrium patens HOM05D004183 ORTHO05D005022 1.9e-40 172.6 864 28.7
BcaC04g18812 Brassica carinata HOM05D004183 ORTHO05D005022 4.2e-40 171.4 241 41.1
HPP92_011016 Vanilla planifolia HOM05D004183 ORTHO05D005022 4.2e-40 171.4 459 27.7
PRCOL_00002789 Prasinoderma coloniale HOM05D004183 ORTHO05D005022 4.7e-39 167.9 897 29.1
Hund12628 Selenicereus undatus HOM05D004183 ORTHO05D005022 4.0e-38 164.9 244 38.5
Hund27690 Selenicereus undatus HOM05D004183 ORTHO05D005022 4.0e-38 164.9 244 38.5
Ciclev10031527m.g Citrus clementina HOM05D004183 ORTHO05D005022 6.8e-38 164.1 170 48.2
Ciclev10030817m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.1e-35 156.8 496 28.2
VMungo1309G2786 Vigna mungo HOM05D004183 ORTHO05D005022 7.8e-34 150.6 154 47.4
RcHm_v2.0_Chr1g0319751 Rosa chinensis HOM05D004183 ORTHO05D005022 1.7e-33 149.4 162 45.1
SMO147G0329 Selaginella moellendorffii HOM05D004183 ORTHO05D005022 3.3e-32 145.2 131 50.4
AUR62031288 Chenopodium quinoa HOM05D004183 ORTHO05D005022 2.1e-31 142.5 244 37.3
RcHm_v2.0_Chr1g0319801 Rosa chinensis HOM05D004183 ORTHO05D005022 3.4e-29 135.2 169 40.8
RcHm_v2.0_Chr1g0320781 Rosa chinensis HOM05D004183 ORTHO05D005022 4.6e-26 124.8 184 38.6
RcHm_v2.0_Chr1g0320901 Rosa chinensis HOM05D004183 ORTHO05D005022 1.3e-25 123.2 162 39.5
RcHm_v2.0_Chr1g0320041 Rosa chinensis HOM05D004183 ORTHO05D005022 2.8e-23 115.5 170 37.6
Ciclev10033525m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.1e-22 113.6 431 25.1
CARHR154510 Cardamine hirsuta HOM05D004183 ORTHO05D005022 7.5e-21 107.5 225 32.0
Glyma.06G161100 Glycine max HOM05D004183 ORTHO05D005022 7.1e-19 100.9 295 29.5
SEGI_41562 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 1.2e-18 100.1 172 36.0
SEGI_18489 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 5.1e-17 94.7 97 47.4
VMungo1309G0778 Vigna mungo HOM05D004183 ORTHO05D005022 9.5e-16 90.5 297 27.9
Ciclev10031844m.g Citrus clementina HOM05D004183 ORTHO05D005022 8.1e-15 87.4 238 28.2
Cfa027322 Carpinus fangiana HOM05D004183 ORTHO05D005022 6.8e-14 84.3 423 22.5
Cpa.g.sc178.29 Carica papaya HOM05D004183 ORTHO05D005022 2.0e-13 82.8 92 45.7
VMungo1309G0357 Vigna mungo HOM05D004183 ORTHO05D005022 1.7e-12 79.7 289 26.0
RcHm_v2.0_Chr1g0319811 Rosa chinensis HOM05D004183 ORTHO05D005022 1.6e-10 73.2 256 25.8
CBR_g19342 Chara braunii HOM05D000019 ORTHO05D000002 4.3e-08 65.1 162 35.8
MBI08_g38580_MAGBIO Magnolia biondii HOM05D004183 ORTHO05D005022 1.2e-07 63.5 78 44.9
COL.COLO4_14587 Corchorus olitorius HOM05D004183 ORTHO05D005022 2.4e-06 59.3 266 23.7
Ciclev10033659m.g Citrus clementina HOM05D004183 ORTHO05D005022 4.0e-06 58.5 174 27.6


User provided reference genes

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