Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre09.g401500 Chlamydomonas reinhardtii HOM05D005559 ORTHO05D139335 1.8e-287 992.6 844 100.0
ECA238G3676 Erigeron canadensis HOM05D005559 ORTHO05D006957 1.6e-22 112.5 122 46.7
CANSAT25G2267 Cannabis sativa HOM05D005559 ORTHO05D006957 8.1e-22 110.2 112 52.7
Sabra02G0003600 Salix brachista HOM05D005559 ORTHO05D006957 2.4e-21 108.6 122 50.0
Migut.N02985 Erythranthe guttata HOM05D005559 ORTHO05D006957 6.9e-21 107.1 112 51.8
MD06G1004300 Malus domestica HOM05D005559 ORTHO05D006957 6.9e-21 107.1 124 48.4
Prupe.5G005700 Prunus persica HOM05D005559 ORTHO05D006957 6.9e-21 107.1 124 48.4
Sc26g0004750 Simmondsia chinensis HOM05D005559 ORTHO05D006957 6.9e-21 107.1 115 52.2
TWI56G0785 Tripterygium wilfordii HOM05D005559 ORTHO05D006957 9.0e-21 106.7 112 51.8
Eucgr.F01812 Eucalyptus grandis HOM05D005559 ORTHO05D006957 1.2e-20 106.3 113 52.2
Glyma.17G262100 Glycine max HOM05D005559 ORTHO05D006957 1.2e-20 106.3 122 49.2
Lsat_1_v5_gn_2_3240 Lactuca sativa HOM05D005559 ORTHO05D006957 1.2e-20 106.3 112 49.1
ClCG11G019030 Citrullus lanatus HOM05D005559 ORTHO05D006957 1.5e-20 105.9 112 52.7
HanXRQChr06g0185311 Helianthus annuus HOM05D005559 ORTHO05D006957 1.5e-20 105.9 117 47.0
Nitab4.5_0001756g0040 Nicotiana tabacum HOM05D005559 ORTHO05D006957 1.5e-20 105.9 112 50.9
RcHm_v2.0_Chr7g0216661 Rosa chinensis HOM05D005559 ORTHO05D006957 1.5e-20 105.9 124 47.6
CAN.G1330.11 Capsicum annuum HOM05D005559 ORTHO05D006957 2.6e-20 105.1 106 51.9
DCAR_023024 Daucus carota HOM05D005559 ORTHO05D006957 2.6e-20 105.1 112 52.7
SalBow6G6240 Salvia bowleyana HOM05D005559 ORTHO05D006957 2.6e-20 105.1 112 50.0
PGR031G1403 Punica granatum HOM05D005559 ORTHO05D006957 3.4e-20 104.8 122 50.0
Cfa014135 Carpinus fangiana HOM05D005559 ORTHO05D006957 4.4e-20 104.4 112 50.9
Haze_22861 Corylus avellana HOM05D005559 ORTHO05D006957 4.4e-20 104.4 112 50.9
AL4G29300 Arabidopsis lyrata HOM05D005559 ORTHO05D006957 7.6e-20 103.6 113 49.6
Glyma.14G223900 Glycine max HOM05D005559 ORTHO05D006957 7.6e-20 103.6 122 48.4
Os02g0715200 Oryza sativa ssp. japonica HOM05D005559 ORTHO05D006957 7.6e-20 103.6 119 46.2
QL02p015726 Quercus lobata HOM05D005559 ORTHO05D006957 7.6e-20 103.6 112 51.8
Lalb_Chr01g0008311 Lupinus albus HOM05D005559 ORTHO05D006957 9.9e-20 103.2 108 51.9
Nn5g31046 Nelumbo nucifera HOM05D005559 ORTHO05D006957 9.9e-20 103.2 107 50.5
Peaxi162Scf00269g00414 Petunia axillaris HOM05D005559 ORTHO05D006957 9.9e-20 103.2 112 50.9
Peaxi162Scf00680g00636 Petunia axillaris HOM05D005559 ORTHO05D006957 9.9e-20 103.2 112 51.8
A03p18820 Brassica napus HOM05D005559 ORTHO05D006957 1.3e-19 102.8 112 50.0
BraA03t11142Z Brassica rapa HOM05D005559 ORTHO05D006957 1.3e-19 102.8 112 50.0
Carub.0004s1526 Capsella rubella HOM05D005559 ORTHO05D006957 1.3e-19 102.8 113 49.6
Cc10_g00280 Coffea canephora HOM05D005559 ORTHO05D006957 1.3e-19 102.8 108 52.8
FvH4_5g26130 Fragaria vesca HOM05D005559 ORTHO05D006957 1.3e-19 102.8 114 48.2
MBI01_g28397_MAGBIO Magnolia biondii HOM05D005559 ORTHO05D006957 1.3e-19 102.8 116 49.1
BcaB01g03926 Brassica carinata HOM05D005559 ORTHO05D006957 1.7e-19 102.4 112 50.0
BcaC01g05830 Brassica carinata HOM05D005559 ORTHO05D006957 1.7e-19 102.4 112 50.0
CiPaw.07G133700 Carya illinoinensis HOM05D005559 ORTHO05D006957 1.7e-19 102.4 108 53.7
Lj4A5T46 Lonicera japonica HOM05D005559 ORTHO05D006957 1.7e-19 102.4 112 50.9
Pp3c12_23240 Physcomitrium patens HOM05D005559 ORTHO05D006957 1.7e-19 102.4 120 46.7
Sp4g15980 Schrenkiella parvula HOM05D005559 ORTHO05D006957 1.7e-19 102.4 112 50.0
CARHR127640 Cardamine hirsuta HOM05D005559 ORTHO05D006957 2.2e-19 102.1 112 48.2
Dinv13752 Davidia involucrata HOM05D005559 ORTHO05D006957 2.2e-19 102.1 112 49.1
Manes.18G002100 Manihot esculenta HOM05D005559 ORTHO05D006957 2.2e-19 102.1 112 50.9
AT2G33630 Arabidopsis thaliana HOM05D005559 ORTHO05D006957 2.9e-19 101.7 113 48.7
Cpa.g.sc26.16 Carica papaya HOM05D005559 ORTHO05D006957 2.9e-19 101.7 112 51.8
AUR62024097 Chenopodium quinoa HOM05D005559 ORTHO05D006957 2.9e-19 101.7 112 51.8
MELO3C017057.2 Cucumis melo HOM05D005559 ORTHO05D006957 2.9e-19 101.7 112 50.9
Thhalv10016587m.g Eutrema salsugineum HOM05D005559 ORTHO05D006957 2.9e-19 101.7 112 49.1
Hund01836 Selenicereus undatus HOM05D005559 ORTHO05D006957 2.9e-19 101.7 116 47.4
Solyc04g082750.3 Solanum lycopersicum HOM05D005559 ORTHO05D006957 2.9e-19 101.7 108 49.1
Sopen04g036390 Solanum pennellii HOM05D005559 ORTHO05D006957 2.9e-19 101.7 108 49.1
TAR381G1403 Trochodendron aralioides HOM05D005559 ORTHO05D006957 2.9e-19 101.7 122 46.7
FAN18G3125 Fragaria x ananassa HOM05D005559 ORTHO05D006957 3.8e-19 101.3 114 47.4
GSVIVG01013425001 Vitis vinifera HOM05D005559 ORTHO05D006957 3.8e-19 101.3 116 49.1
Ah.01g024690 Amaranthus hybridus HOM05D005559 ORTHO05D006957 8.4e-19 100.1 112 51.8
Ciclev10001002m.g Citrus clementina HOM05D005559 ORTHO05D006957 8.4e-19 100.1 112 50.9
Aa31LG9G13560 Aethionema arabicum HOM05D005559 ORTHO05D006957 1.1e-18 99.8 108 50.9
FAN13G1149 Fragaria x ananassa HOM05D005559 ORTHO05D006957 1.1e-18 99.8 114 47.4
Oeu035757.2 Olea europaea HOM05D005559 ORTHO05D006957 1.1e-18 99.8 112 50.9
Rhsim06G0003400 Rhododendron simsii HOM05D005559 ORTHO05D006957 1.1e-18 99.8 109 47.7
Zm00001eb252680 Zea mays HOM05D005559 ORTHO05D006957 1.4e-18 99.4 117 47.0
C03p21990 Brassica napus HOM05D005559 ORTHO05D006957 1.9e-18 99.0 112 49.1
BolC3t14582H Brassica oleracea HOM05D005559 ORTHO05D006957 1.9e-18 99.0 112 49.1
Lj5g0020249 Lotus japonicus HOM05D005559 ORTHO05D006957 1.9e-18 99.0 117 48.7
Medtr1g026540 Medicago truncatula HOM05D005559 ORTHO05D006957 1.9e-18 99.0 115 48.7
PSO675G8223 Papaver somniferum HOM05D005559 ORTHO05D006957 1.9e-18 99.0 107 49.5
Phvul.001G000700 Phaseolus vulgaris HOM05D005559 ORTHO05D006957 1.9e-18 99.0 122 45.9
Ca_13494_v3 Cicer arietinum L. HOM05D005559 ORTHO05D006957 2.4e-18 98.6 117 47.9
Ca_30151_v3 Cicer arietinum L. HOM05D005559 ORTHO05D006957 2.4e-18 98.6 117 47.9
PSO541G1621 Papaver somniferum HOM05D005559 ORTHO05D006957 2.4e-18 98.6 107 49.5
MSTRG.24514 Avicennia marina HOM05D005559 ORTHO05D006957 3.2e-18 98.2 112 49.1
PGSC0003DMG400009923 Solanum tuberosum HOM05D005559 ORTHO05D006957 4.2e-18 97.8 108 48.1
Thecc.08G100000 Theobroma cacao HOM05D005559 ORTHO05D006957 4.2e-18 97.8 120 45.0
vmacro21769 Vaccinium macrocarpon HOM05D005559 ORTHO05D006957 4.2e-18 97.8 111 46.8
CsaV3_4G037630 Cucumis sativus L. HOM05D005559 ORTHO05D006957 5.4e-18 97.4 112 49.1
Psat0s1355g0040 Pisum sativum HOM05D005559 ORTHO05D006957 5.4e-18 97.4 116 44.8
SGA_v2.0_scaffold227G43160 Striga asiatica HOM05D005559 ORTHO05D006957 5.4e-18 97.4 108 49.1
TPR.G26383 Trifolium pratense HOM05D005559 ORTHO05D006957 5.4e-18 97.4 116 45.7
unitig_22.g5730 Utricularia gibba HOM05D005559 ORTHO05D006957 5.4e-18 97.4 112 49.1
VMungo0647G1813 Vigna mungo HOM05D005559 ORTHO05D006957 5.4e-18 97.4 122 45.1
CDE05G2847 Ceratophyllum demersum HOM05D005559 ORTHO05D006957 7.1e-18 97.1 108 49.1
THA.LOC104806872 Tarenaya hassleriana HOM05D005559 ORTHO05D006957 7.1e-18 97.1 112 48.2
AagrBONN_evm.TU.Sc2ySwM_368.1400 Anthoceros agrestis HOM05D005559 ORTHO05D006957 9.3e-18 96.7 104 47.1
Potri.002G005100 Populus trichocarpa HOM05D005559 ORTHO05D006957 9.3e-18 96.7 122 45.1
Gohir.A01G102000 Gossypium hirsutum HOM05D005559 ORTHO05D006957 1.6e-17 95.9 122 46.7
Gohir.D01G087100 Gossypium hirsutum HOM05D005559 ORTHO05D006957 1.6e-17 95.9 122 46.7
Gorai.002G112800 Gossypium raimondii HOM05D005559 ORTHO05D006957 1.6e-17 95.9 122 46.7
Sabra02G0003500 Salix brachista HOM05D005559 ORTHO05D006957 2.1e-17 95.5 122 45.1
Actinidia17075 Actinidia chinensis HOM05D005559 ORTHO05D006957 2.7e-17 95.1 124 42.7
Duzib116G0447 Durio zibethinus HOM05D005559 ORTHO05D006957 2.7e-17 95.1 122 46.7
arahy.Tifrunner.gnm1.ann1.MFDH98 Arachis hypogaea HOM05D005559 ORTHO05D006957 3.5e-17 94.7 124 45.2
CSS0038076 Camellia sinensis var. sinensis HOM05D005559 ORTHO05D006957 3.5e-17 94.7 116 44.0
ATR0605G082 Amborella trichopoda HOM05D005559 ORTHO05D006957 4.6e-17 94.4 116 46.6
AUR62035169 Chenopodium quinoa HOM05D005559 ORTHO05D006957 4.6e-17 94.4 112 48.2
Sp5g31610 Schrenkiella parvula HOM05D005559 ORTHO05D006957 4.6e-17 94.4 108 45.4
COL.COLO4_12311 Corchorus olitorius HOM05D005559 ORTHO05D006957 6.0e-17 94.0 115 49.6
Atru.chr13.62 Acer truncatum HOM05D005559 ORTHO05D006957 7.8e-17 93.6 112 49.1
Ah.03g148440 Amaranthus hybridus HOM05D005559 ORTHO05D006957 1.0e-16 93.2 112 47.3
A07p42110 Brassica napus HOM05D005559 ORTHO05D006957 1.0e-16 93.2 108 44.4
CSS0028031 Camellia sinensis var. sinensis HOM05D005559 ORTHO05D006957 1.0e-16 93.2 116 44.0
C06p50680 Brassica napus HOM05D005559 ORTHO05D006957 1.3e-16 92.8 108 43.5
BraA07t31740Z Brassica rapa HOM05D005559 ORTHO05D006957 1.7e-16 92.4 108 44.4
BcaC08g47244 Brassica carinata HOM05D005559 ORTHO05D006957 2.3e-16 92.0 108 43.5
Aqoxy6G02983 Aquilegia oxysepala HOM05D005559 ORTHO05D006957 3.0e-16 91.7 121 44.6
HPP92_020534 Vanilla planifolia HOM05D005559 ORTHO05D006957 5.1e-16 90.9 103 48.5
BcaC08g47151 Brassica carinata HOM05D005559 ORTHO05D006957 6.6e-16 90.5 109 42.2
BolC6t40094H Brassica oleracea HOM05D005559 ORTHO05D006957 8.7e-16 90.1 107 43.0
EL10Ac1g01873 Beta vulgaris HOM05D005559 ORTHO05D006957 2.5e-15 88.6 413 25.2
Thhalv10018454m.g Eutrema salsugineum HOM05D005559 ORTHO05D006957 2.5e-15 88.6 108 44.4
FAN08G1655 Fragaria x ananassa HOM05D005559 ORTHO05D006957 4.3e-15 87.8 136 39.7
Aa31LG4G6530 Aethionema arabicum HOM05D005559 ORTHO05D006957 2.8e-14 85.1 103 44.7
Cre16.g678773 Chlamydomonas reinhardtii HOM05D005559 ORTHO05D006957 1.4e-13 82.8 533 23.1
SMO147G0007 Selaginella moellendorffii HOM05D005559 ORTHO05D006957 1.8e-13 82.4 112 45.5
Ah.11g041970 Amaranthus hybridus HOM05D005559 ORTHO05D006957 9.0e-13 80.1 106 44.3
AL2G36580 Arabidopsis lyrata HOM05D005559 ORTHO05D006957 1.7e-11 75.9 107 40.2
Carub.0002s2336 Capsella rubella HOM05D005559 ORTHO05D006957 1.7e-11 75.9 107 39.3
Pp3c5_12410 Physcomitrium patens HOM05D002028 ORTHO05D002474 2.2e-11 75.5 115 35.7
SMO351G0612 Selaginella moellendorffii HOM05D002028 ORTHO05D002474 2.2e-11 75.5 107 39.3
Mapoly0001s0030 Marchantia polymorpha HOM05D002028 ORTHO05D002474 3.8e-11 74.7 109 35.8
SEGI_28534 Sequoiadendron giganteum HOM05D005559 ORTHO05D006957 5.4e-10 70.9 87 46.0
A05p03760 Brassica napus HOM05D002300 ORTHO05D002340 7.1e-10 70.5 106 33.0
AagrBONN_evm.TU.Sc2ySwM_117.1965 Anthoceros agrestis HOM05D002028 ORTHO05D002474 9.3e-10 70.1 112 34.8
AagrBONN_evm.TU.Sc2ySwM_368.717 Anthoceros agrestis HOM05D002028 ORTHO05D002474 1.2e-09 69.7 112 34.8
C04p04460 Brassica napus HOM05D002300 ORTHO05D002340 1.2e-09 69.7 106 33.0
BolC4t22079H Brassica oleracea HOM05D002042 ORTHO05D002340 1.2e-09 69.7 106 33.0
BraA05t19363Z Brassica rapa HOM05D002042 ORTHO05D003928 1.2e-09 69.7 106 33.0
PSO541G1320 Papaver somniferum HOM05D005559 ORTHO05D006957 1.2e-09 69.7 137 35.0
Sp4g25520 Schrenkiella parvula HOM05D002028 ORTHO05D002474 2.7e-09 68.6 106 32.1
Atru.chr7.1819 Acer truncatum HOM05D002028 ORTHO05D002474 4.6e-09 67.8 109 32.1
Lalb_Chr01g0003081 Lupinus albus HOM05D002028 ORTHO05D002474 6.0e-09 67.4 106 36.8
HPP92_020525 Vanilla planifolia HOM05D005559 ORTHO05D006957 7.9e-09 67.0 100 42.0
Thhalv10001381m.g Eutrema salsugineum HOM05D002028 ORTHO05D002474 1.3e-08 66.2 106 32.1
Dinv05081 Davidia involucrata HOM05D002028 ORTHO05D002474 1.8e-08 65.9 106 30.2
Prupe.1G198200 Prunus persica HOM05D002028 ORTHO05D002474 1.8e-08 65.9 105 33.3
PSO675G8730 Papaver somniferum HOM05D005559 ORTHO05D006957 3.0e-08 65.1 140 33.6
Actinidia09349 Actinidia chinensis HOM05D002028 ORTHO05D002474 3.9e-08 64.7 109 33.9
Hma1.2p1_0002F.1_g003380 Hydrangea macrophylla HOM05D002028 ORTHO05D002474 3.9e-08 64.7 105 35.2
Phvul.011G053200 Phaseolus vulgaris HOM05D002028 ORTHO05D002474 3.9e-08 64.7 106 34.0
SalBow4G0515 Salvia bowleyana HOM05D002028 ORTHO05D002474 3.9e-08 64.7 108 32.4
VMungo1127G0975 Vigna mungo HOM05D002300 ORTHO05D002340 3.9e-08 64.7 105 33.3
ClCG05G007220 Citrullus lanatus HOM05D002028 ORTHO05D002474 6.7e-08 63.9 106 33.0
Sc25g0002620 Simmondsia chinensis HOM05D002028 ORTHO05D002474 6.7e-08 63.9 106 34.0
CsaV3_3G015980 Cucumis sativus L. HOM05D002028 ORTHO05D002474 8.7e-08 63.5 106 33.0
Dinv44156 Davidia involucrata HOM05D002028 ORTHO05D002474 8.7e-08 63.5 106 29.2
Glyma.12G050900 Glycine max HOM05D002028 ORTHO05D002474 1.5e-07 62.8 106 34.0
Lj6C107G5 Lonicera japonica HOM05D002028 ORTHO05D002474 1.9e-07 62.4 102 29.4
SEGI_01118 Sequoiadendron giganteum HOM05D002028 ORTHO05D002474 2.5e-07 62.0 107 32.7
Gohir.A06G080600 Gossypium hirsutum HOM05D002028 ORTHO05D002474 3.3e-07 61.6 109 33.0
Gohir.D06G080100 Gossypium hirsutum HOM05D002028 ORTHO05D002474 3.3e-07 61.6 109 33.0
MD04G1045100 Malus domestica HOM05D002028 ORTHO05D002474 4.3e-07 61.2 104 32.7
SEGI_07319 Sequoiadendron giganteum HOM05D005559 ORTHO05D006957 5.6e-07 60.8 63 49.2
SEGI_39851 Sequoiadendron giganteum HOM05D005559 ORTHO05D006957 5.6e-07 60.8 63 49.2
THA.LOC104819911 Tarenaya hassleriana HOM05D002028 ORTHO05D002474 5.6e-07 60.8 99 36.4
Zm00001eb019510 Zea mays HOM05D002028 ORTHO05D002474 5.6e-07 60.8 113 27.4
FAN18G2825 Fragaria x ananassa HOM05D005559 ORTHO05D006957 7.4e-07 60.5 82 43.9
HanXRQChr13g0419901 Helianthus annuus HOM05D002028 ORTHO05D002474 7.4e-07 60.5 102 28.4
Sed0027421 Sechium edule HOM05D002028 ORTHO05D002474 9.6e-07 60.1 106 31.1
ATR0681G186 Amborella trichopoda HOM05D002028 ORTHO05D002474 1.3e-06 59.7 108 29.6
AUR62023839 Chenopodium quinoa HOM05D002028 ORTHO05D002474 1.3e-06 59.7 105 29.5
Gohir.D10G126400 Gossypium hirsutum HOM05D002028 ORTHO05D002474 1.3e-06 59.7 105 30.5
Gorai.011G139300 Gossypium raimondii HOM05D002028 ORTHO05D002474 1.3e-06 59.7 105 30.5
Hma1.2p1_0699F.1_g205720 Hydrangea macrophylla HOM05D005559 ORTHO05D006957 1.3e-06 59.7 73 46.6
Hund12409 Selenicereus undatus HOM05D002028 ORTHO05D002474 2.1e-06 58.9 106 33.0
AUR62002350 Chenopodium quinoa HOM05D002028 ORTHO05D002474 3.7e-06 58.2 105 29.5
Gohir.A10G140400 Gossypium hirsutum HOM05D002028 ORTHO05D002474 4.8e-06 57.8 105 30.5
Aqoxy2G04158 Aquilegia oxysepala HOM05D002028 ORTHO05D002474 6.2e-06 57.4 105 31.4
Gorai.010G093200 Gossypium raimondii HOM05D002028 ORTHO05D002474 8.1e-06 57.0 110 32.7


User provided reference genes

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