Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre09.g400219 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 1.7e-237 825.9 483 100.0
Cre03.g195500 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 3.2e-31 140.6 173 43.4
Cre12.g530950 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 5.0e-24 116.7 167 36.5
AagrBONN_evm.TU.Sc2ySwM_344.3941 Anthoceros agrestis HOM05D004930 ORTHO05D006531 5.0e-16 90.1 166 35.5
Peaxi162Scf00011g00243 Petunia axillaris HOM05D004930 ORTHO05D006531 8.5e-16 89.4 167 34.1
CAN.G1577.7 Capsicum annuum HOM05D004930 ORTHO05D006531 1.4e-15 88.6 166 34.9
Nitab4.5_0011195g0040 Nicotiana tabacum HOM05D004930 ORTHO05D006531 2.5e-15 87.8 166 34.3
Solyc01g104310.3 Solanum lycopersicum HOM05D004930 ORTHO05D006531 3.2e-15 87.4 166 33.7
PGSC0003DMG400023754 Solanum tuberosum HOM05D004930 ORTHO05D006531 3.2e-15 87.4 166 33.7
Sopen01g046750 Solanum pennellii HOM05D004930 ORTHO05D006531 5.5e-15 86.7 166 33.1
MD15G1421100 Malus domestica HOM05D004930 ORTHO05D006531 7.2e-15 86.3 167 34.1
AagrBONN_evm.TU.Sc2ySwM_344.3947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.6e-14 85.1 204 33.3
Ciclev10001315m.g Citrus clementina HOM05D004930 ORTHO05D006531 1.6e-14 85.1 166 33.7
EL10Ac6g15372 Beta vulgaris HOM05D004930 ORTHO05D006531 2.7e-14 84.3 159 35.2
CDE05G0822 Ceratophyllum demersum HOM05D004930 ORTHO05D006531 4.6e-14 83.6 166 34.3
HanXRQChr02g0058791 Helianthus annuus HOM05D004930 ORTHO05D006531 6.1e-14 83.2 166 34.3
SGA_v2.0_scaffold145G36067 Striga asiatica HOM05D004930 ORTHO05D006531 6.1e-14 83.2 166 33.7
SMO145G0200 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 7.9e-14 82.8 168 34.5
THA.LOC104810264 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 7.9e-14 82.8 167 32.9
A09p32980 Brassica napus HOM05D004930 ORTHO05D006531 1.0e-13 82.4 167 32.9
BraA09t38838Z Brassica rapa HOM05D004930 ORTHO05D006531 1.0e-13 82.4 167 32.9
Eucgr.G00613 Eucalyptus grandis HOM05D004930 ORTHO05D006531 1.0e-13 82.4 166 32.5
FvH4_5g29680 Fragaria vesca HOM05D004930 ORTHO05D006531 1.4e-13 82.0 166 33.7
FAN04G2298 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.4e-13 82.0 166 33.7
FAN13G1313 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.4e-13 82.0 166 33.7
FAN18G2930 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.4e-13 82.0 166 33.7
ECA236G4599 Erigeron canadensis HOM05D004930 ORTHO05D006531 1.8e-13 81.6 166 33.7
HanXRQChr11g0333531 Helianthus annuus HOM05D004930 ORTHO05D006531 1.8e-13 81.6 168 33.3
Lsat_1_v5_gn_7_77761 Lactuca sativa HOM05D004930 ORTHO05D006531 5.1e-13 80.1 166 34.3
Pp3c11_20720 Physcomitrium patens HOM05D004930 ORTHO05D006531 5.1e-13 80.1 167 34.7
RcHm_v2.0_Chr7g0223001 Rosa chinensis HOM05D004930 ORTHO05D006531 5.1e-13 80.1 166 33.1
SalBow6G0918 Salvia bowleyana HOM05D004930 ORTHO05D006531 5.1e-13 80.1 166 32.5
SalBow6G1869 Salvia bowleyana HOM05D004930 ORTHO05D006531 5.1e-13 80.1 166 32.5
Aa31LG6G7800 Aethionema arabicum HOM05D004930 ORTHO05D006531 6.7e-13 79.7 165 30.3
C06p12670 Brassica napus HOM05D004930 ORTHO05D006531 6.7e-13 79.7 166 31.3
MBI03_g28294_MAGBIO Magnolia biondii HOM05D004930 ORTHO05D006531 6.7e-13 79.7 169 32.5
PSO170G4712 Papaver somniferum HOM05D004930 ORTHO05D006531 6.7e-13 79.7 166 33.1
arahy.Tifrunner.gnm1.ann1.3M9FW6 Arachis hypogaea HOM05D004930 ORTHO05D006531 8.8e-13 79.3 166 33.7
Ca_00086_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 1.1e-12 79.0 166 32.5
Ca_29925_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 1.1e-12 79.0 166 32.5
ClCG05G009760 Citrullus lanatus HOM05D004930 ORTHO05D006531 1.1e-12 79.0 166 31.9
COL.COLO4_17882 Corchorus olitorius HOM05D004930 ORTHO05D006531 1.1e-12 79.0 165 32.7
Lalb_Chr20g0123411 Lupinus albus HOM05D004930 ORTHO05D006531 1.1e-12 79.0 166 34.3
Oeu012747.1 Olea europaea HOM05D004930 ORTHO05D006531 1.1e-12 79.0 166 32.5
CSS0021494 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 1.5e-12 78.6 166 31.9
TPR.G2103 Trifolium pratense HOM05D004930 ORTHO05D006531 1.5e-12 78.6 166 31.9
Zm00001eb113740 Zea mays HOM05D004930 ORTHO05D006531 1.5e-12 78.6 166 30.7
BcaB04g17919 Brassica carinata HOM05D004930 ORTHO05D006531 2.0e-12 78.2 166 30.7
BcaC08g43878 Brassica carinata HOM05D004930 ORTHO05D006531 2.0e-12 78.2 167 32.3
BolC6t36417H Brassica oleracea HOM05D004930 ORTHO05D006531 2.0e-12 78.2 167 32.3
MELO3C019485.2 Cucumis melo HOM05D004930 ORTHO05D006531 2.0e-12 78.2 165 31.5
CsaV3_3G018910 Cucumis sativus L. HOM05D004930 ORTHO05D006531 2.0e-12 78.2 165 31.5
Os11g0546300 Oryza sativa ssp. japonica HOM05D004930 ORTHO05D006531 2.0e-12 78.2 166 30.1
arahy.Tifrunner.gnm1.ann1.PLNC5S Arachis hypogaea HOM05D004930 ORTHO05D006531 2.5e-12 77.8 166 32.5
Cpa.g.sc2.5 Carica papaya HOM05D004930 ORTHO05D006531 2.5e-12 77.8 168 31.5
Nn1g08650 Nelumbo nucifera HOM05D004930 ORTHO05D006531 2.5e-12 77.8 166 31.9
Potri.003G020800 Populus trichocarpa HOM05D004930 ORTHO05D006531 2.5e-12 77.8 166 31.3
SMO139G0053 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 2.5e-12 77.8 168 33.3
Hund04330 Selenicereus undatus HOM05D004930 ORTHO05D006531 2.5e-12 77.8 167 32.9
BcaC07g37556 Brassica carinata HOM05D004930 ORTHO05D006531 3.3e-12 77.4 166 30.7
A08p08610 Brassica napus HOM05D004930 ORTHO05D006531 3.3e-12 77.4 166 31.3
BraA08t32874Z Brassica rapa HOM05D004930 ORTHO05D006531 3.3e-12 77.4 166 31.3
Lj6g0009653 Lotus japonicus HOM05D004930 ORTHO05D006531 3.3e-12 77.4 166 32.5
Medtr2g007650 Medicago truncatula HOM05D004930 ORTHO05D006531 3.3e-12 77.4 166 33.1
SEGI_13232 Sequoiadendron giganteum HOM05D004930 ORTHO05D006531 3.3e-12 77.4 165 32.1
Carub.0001s3147 Capsella rubella HOM05D004930 ORTHO05D006531 4.3e-12 77.0 166 30.7
Atru.chr6.830 Acer truncatum HOM05D004930 ORTHO05D006531 5.7e-12 76.6 166 32.5
Cc02_g22360 Coffea canephora HOM05D004930 ORTHO05D006531 7.4e-12 76.3 166 31.3
Lalb_Chr18g0060861 Lupinus albus HOM05D004930 ORTHO05D006531 7.4e-12 76.3 157 33.1
Potri.001G209500 Populus trichocarpa HOM05D004930 ORTHO05D006531 7.4e-12 76.3 166 30.7
Rhsim11G0130300 Rhododendron simsii HOM05D004930 ORTHO05D006531 7.4e-12 76.3 166 31.3
TAR376G0678 Trochodendron aralioides HOM05D004930 ORTHO05D006531 7.4e-12 76.3 166 31.9
GSVIVG01022999001 Vitis vinifera HOM05D004930 ORTHO05D006531 7.4e-12 76.3 167 32.3
Duzib248G0906 Durio zibethinus HOM05D004930 ORTHO05D006531 9.7e-12 75.9 166 31.3
CANSAT11G0917 Cannabis sativa HOM05D004930 ORTHO05D006531 1.3e-11 75.5 166 33.1
Gohir.A01G001000 Gossypium hirsutum HOM05D004930 ORTHO05D006531 1.3e-11 75.5 165 30.9
Gohir.D01G000700 Gossypium hirsutum HOM05D004930 ORTHO05D006531 1.3e-11 75.5 165 30.9
Gorai.002G001200 Gossypium raimondii HOM05D004930 ORTHO05D006531 1.3e-11 75.5 165 30.9
PRCOL_00005484 Prasinoderma coloniale HOM05D007321 ORTHO05D009244 1.3e-11 75.5 176 33.5
Sp1g28730 Schrenkiella parvula HOM05D004930 ORTHO05D006531 1.3e-11 75.5 167 31.1
Thecc.02G040000 Theobroma cacao HOM05D004930 ORTHO05D006531 1.3e-11 75.5 165 30.9
Aqoxy5G02422 Aquilegia oxysepala HOM05D004930 ORTHO05D006531 1.7e-11 75.1 165 30.9
Gohir.A08G000149 Gossypium hirsutum HOM05D004930 ORTHO05D006531 1.7e-11 75.1 165 30.3
VMungo0540G0757 Vigna mungo HOM05D004930 ORTHO05D006531 1.7e-11 75.1 166 32.5
BcaB07g32965 Brassica carinata HOM05D004930 ORTHO05D006531 2.2e-11 74.7 167 30.5
CARHR032640 Cardamine hirsuta HOM05D004930 ORTHO05D006531 2.2e-11 74.7 167 30.5
DCAR_001819 Daucus carota HOM05D004930 ORTHO05D006531 2.2e-11 74.7 166 31.3
Glyma.08G184900 Glycine max HOM05D004930 ORTHO05D006531 2.2e-11 74.7 166 31.9
Gohir.D08G010200 Gossypium hirsutum HOM05D004930 ORTHO05D006531 2.2e-11 74.7 165 30.3
Gorai.004G003500 Gossypium raimondii HOM05D004930 ORTHO05D006531 2.2e-11 74.7 165 30.3
Phvul.006G213000 Phaseolus vulgaris HOM05D004930 ORTHO05D006531 2.2e-11 74.7 166 32.5
TAR628G0980 Trochodendron aralioides HOM05D004930 ORTHO05D006531 2.2e-11 74.7 166 31.3
Cfa005536 Carpinus fangiana HOM05D004930 ORTHO05D006531 2.8e-11 74.3 166 30.1
CiPaw.06G148500 Carya illinoinensis HOM05D004930 ORTHO05D006531 2.8e-11 74.3 157 31.8
CBR_g22336 Chara braunii HOM05D004930 ORTHO05D006531 2.8e-11 74.3 100 38.0
Glyma.15G047800 Glycine max HOM05D004930 ORTHO05D006531 3.7e-11 73.9 166 31.3
Psat1g224280 Pisum sativum HOM05D004930 ORTHO05D006531 3.7e-11 73.9 166 31.3
Rhsim05G0119100 Rhododendron simsii HOM05D004930 ORTHO05D006531 3.7e-11 73.9 166 31.3
ATR0684G093 Amborella trichopoda HOM05D004930 ORTHO05D006531 4.8e-11 73.6 166 31.3
Duzib052G0674 Durio zibethinus HOM05D004930 ORTHO05D006531 4.8e-11 73.6 165 30.3
TWI59G0754 Tripterygium wilfordii HOM05D004930 ORTHO05D006531 4.8e-11 73.6 166 30.7
Mapoly0101s0012 Marchantia polymorpha HOM05D004930 ORTHO05D006531 6.3e-11 73.2 159 35.8
Actinidia39050 Actinidia chinensis HOM05D004930 ORTHO05D006531 8.2e-11 72.8 168 34.5
AUR62003501 Chenopodium quinoa HOM05D004930 ORTHO05D006531 8.2e-11 72.8 166 29.5
PGR042G0956 Punica granatum HOM05D004930 ORTHO05D006531 8.2e-11 72.8 179 29.1
AL1G47670 Arabidopsis lyrata HOM05D004930 ORTHO05D006531 1.1e-10 72.4 167 30.5
AT1G33270 Arabidopsis thaliana HOM05D004930 ORTHO05D006531 1.1e-10 72.4 167 30.5
Sabra03G0012100 Salix brachista HOM05D004930 ORTHO05D006531 6.9e-10 69.7 144 31.9
THA.LOC104813074 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 1.2e-09 68.9 100 39.0
BolC8t47898H Brassica oleracea HOM05D004930 ORTHO05D006531 3.4e-09 67.4 143 30.8
MCO11G494 Micromonas commoda HOM05D004930 ORTHO05D006531 4.5e-09 67.0 213 31.5
Lj5A251T70 Lonicera japonica HOM05D004930 ORTHO05D006531 7.7e-09 66.2 134 31.3
Nitab4.5_0002245g0180 Nicotiana tabacum HOM05D004930 ORTHO05D006531 2.2e-08 64.7 88 39.8
Thhalv10007991m.g Eutrema salsugineum HOM05D004930 ORTHO05D006531 4.2e-07 60.5 99 34.3
HPP92_002187 Vanilla planifolia HOM05D004930 ORTHO05D006531 2.1e-06 58.2 88 34.1
Dinv19356 Davidia involucrata HOM05D004930 ORTHO05D006531 4.7e-06 57.0 88 35.2


User provided reference genes

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