Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre09.g396900 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 1.9e-246 855.5 464 100.0
Os06g0141166 Oryza sativa ssp. japonica HOM05D004174 ORTHO05D004624 1.6e-48 198.0 294 40.5
Zm00001eb377430 Zea mays HOM05D004174 ORTHO05D004624 1.1e-47 195.3 293 38.9
HPP92_000661 Vanilla planifolia HOM05D004174 ORTHO05D004624 4.0e-47 193.4 299 38.1
HPP92_000685 Vanilla planifolia HOM05D004174 ORTHO05D004624 8.9e-47 192.2 299 37.8
Migut.J01169 Erythranthe guttata HOM05D004174 ORTHO05D004624 9.8e-46 188.7 241 41.1
Aa31LG8G2170 Aethionema arabicum HOM05D004174 ORTHO05D004624 1.3e-45 188.3 242 42.6
ECA240G3275 Erigeron canadensis HOM05D004174 ORTHO05D004624 2.9e-45 187.2 228 43.0
DCAR_017828 Daucus carota HOM05D004174 ORTHO05D004624 3.7e-45 186.8 235 42.6
Gohir.A13G199200 Gossypium hirsutum HOM05D004174 ORTHO05D004624 4.9e-45 186.4 233 42.9
Actinidia26403 Actinidia chinensis HOM05D004174 ORTHO05D004624 6.4e-45 186.0 232 42.2
ATR1156G006 Amborella trichopoda HOM05D004174 ORTHO05D004624 6.4e-45 186.0 293 37.5
Cc06_g08790 Coffea canephora HOM05D004174 ORTHO05D004624 6.4e-45 186.0 313 37.7
TWI34G0924 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 1.4e-44 184.9 227 42.7
arahy.Tifrunner.gnm1.ann1.SBVG8E Arachis hypogaea HOM05D004174 ORTHO05D004624 1.9e-44 184.5 228 42.1
COL.COLO4_05761 Corchorus olitorius HOM05D004174 ORTHO05D004624 1.9e-44 184.5 237 41.8
Actinidia07434 Actinidia chinensis HOM05D004174 ORTHO05D004624 2.4e-44 184.1 232 42.2
Duzib150G0384 Durio zibethinus HOM05D004174 ORTHO05D004624 2.4e-44 184.1 241 41.9
Gohir.D13G204700 Gossypium hirsutum HOM05D004174 ORTHO05D004624 2.4e-44 184.1 228 43.4
Gorai.013G233600 Gossypium raimondii HOM05D004174 ORTHO05D004624 2.4e-44 184.1 228 43.4
MD00G1107300 Malus domestica HOM05D004174 ORTHO05D004624 2.4e-44 184.1 231 42.9
MD02G1035600 Malus domestica HOM05D004174 ORTHO05D004624 2.4e-44 184.1 231 42.4
Sc18g0000710 Simmondsia chinensis HOM05D004174 ORTHO05D004624 2.4e-44 184.1 232 44.0
Ca_03159_v3 Cicer arietinum L. HOM05D004174 ORTHO05D004624 3.2e-44 183.7 228 42.5
Atru.chr7.1197 Acer truncatum HOM05D004174 ORTHO05D004624 4.1e-44 183.3 286 38.1
Eucgr.C04181 Eucalyptus grandis HOM05D004174 ORTHO05D004624 4.1e-44 183.3 231 41.1
FAN23G0992 Fragaria x ananassa HOM05D004174 ORTHO05D004624 4.1e-44 183.3 233 41.2
Psat1g025760 Pisum sativum HOM05D004174 ORTHO05D004624 4.1e-44 183.3 237 40.5
RcHm_v2.0_Chr2g0089131 Rosa chinensis HOM05D004174 ORTHO05D004624 4.1e-44 183.3 233 41.6
THA.LOC104799651 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 4.1e-44 183.3 230 43.0
CARHR192760 Cardamine hirsuta HOM05D004174 ORTHO05D004624 5.4e-44 183.0 240 41.7
FAN26G0665 Fragaria x ananassa HOM05D004174 ORTHO05D004624 5.4e-44 183.0 233 41.2
FAN26G3217 Fragaria x ananassa HOM05D004174 ORTHO05D004624 5.4e-44 183.0 233 41.2
Lalb_Chr23g0275331 Lupinus albus HOM05D004174 ORTHO05D004624 5.4e-44 183.0 228 42.5
Potri.006G154200 Populus trichocarpa HOM05D004174 ORTHO05D004624 5.4e-44 183.0 281 39.1
TPR.G31095 Trifolium pratense HOM05D004174 ORTHO05D004624 5.4e-44 183.0 228 42.5
BcaC03g13730 Brassica carinata HOM05D004174 ORTHO05D004624 7.1e-44 182.6 234 42.3
ClCG11G002850 Citrullus lanatus HOM05D004174 ORTHO05D004624 7.1e-44 182.6 232 41.4
MELO3C004525.2 Cucumis melo HOM05D004174 ORTHO05D004624 7.1e-44 182.6 232 41.4
FAN19G0954 Fragaria x ananassa HOM05D004174 ORTHO05D004624 7.1e-44 182.6 233 41.2
FAN28G1355 Fragaria x ananassa HOM05D004174 ORTHO05D004624 7.1e-44 182.6 233 40.8
VMungo1309G2067 Vigna mungo HOM05D004174 ORTHO05D004624 7.1e-44 182.6 228 42.5
EL10Ac8g18616 Beta vulgaris HOM05D004174 ORTHO05D004624 9.2e-44 182.2 233 41.6
CDE02G3646 Ceratophyllum demersum HOM05D004174 ORTHO05D004624 9.2e-44 182.2 257 40.1
HanXRQChr03g0062501 Helianthus annuus HOM05D004174 ORTHO05D004624 9.2e-44 182.2 228 41.2
Lsat_1_v5_gn_8_58900 Lactuca sativa HOM05D004174 ORTHO05D004624 9.2e-44 182.2 231 41.6
AagrBONN_evm.TU.Sc2ySwM_368.699 Anthoceros agrestis HOM05D004174 ORTHO05D004624 1.2e-43 181.8 263 40.3
AT5G20070 Arabidopsis thaliana HOM05D004174 ORTHO05D004624 1.2e-43 181.8 234 42.3
CsaV3_2G002690 Cucumis sativus L. HOM05D004174 ORTHO05D004624 1.2e-43 181.8 232 40.9
Hma1.2p1_0665F.1_g199150 Hydrangea macrophylla HOM05D004174 ORTHO05D004624 1.2e-43 181.8 287 38.7
Lalb_Chr08g0234871 Lupinus albus HOM05D004174 ORTHO05D004624 1.2e-43 181.8 228 42.5
FvH4_1g03600 Fragaria vesca HOM05D004174 ORTHO05D004624 1.6e-43 181.4 233 40.8
Gohir.D08G260000 Gossypium hirsutum HOM05D004174 ORTHO05D004624 1.6e-43 181.4 233 41.2
Medtr2g054680 Medicago truncatula HOM05D004174 ORTHO05D004624 1.6e-43 181.4 228 42.1
BcaB05g22875 Brassica carinata HOM05D004174 ORTHO05D004624 2.1e-43 181.0 338 34.9
Glyma.06G216700 Glycine max HOM05D004174 ORTHO05D004624 2.1e-43 181.0 228 42.1
Nn8g39387 Nelumbo nucifera HOM05D004174 ORTHO05D004624 2.1e-43 181.0 227 42.3
Hund09144 Selenicereus undatus HOM05D004174 ORTHO05D004624 2.1e-43 181.0 228 43.0
Cfa003346 Carpinus fangiana HOM05D004174 ORTHO05D004624 2.7e-43 180.6 231 42.0
TWI32G1270 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 2.7e-43 180.6 227 41.9
Haze_25614 Corylus avellana HOM05D004174 ORTHO05D004624 3.5e-43 180.3 231 42.0
Thhalv10013566m.g Eutrema salsugineum HOM05D004174 ORTHO05D004624 3.5e-43 180.3 240 41.2
Lj1g0010752 Lotus japonicus HOM05D004174 ORTHO05D004624 3.5e-43 180.3 228 41.2
MBI04_g24208_MAGBIO Magnolia biondii HOM05D004174 ORTHO05D004624 3.5e-43 180.3 227 41.0
Thecc.09G123000 Theobroma cacao HOM05D004174 ORTHO05D004624 3.5e-43 180.3 234 41.9
DCAR_009201 Daucus carota HOM05D004174 ORTHO05D004624 4.6e-43 179.9 239 40.6
QL02p087765 Quercus lobata HOM05D004174 ORTHO05D004624 4.6e-43 179.9 287 35.5
AL6G31620 Arabidopsis lyrata HOM05D004174 ORTHO05D004624 6.0e-43 179.5 344 35.2
CiPaw.03G241700 Carya illinoinensis HOM05D004174 ORTHO05D004624 6.0e-43 179.5 231 40.7
Dinv36548 Davidia involucrata HOM05D004174 ORTHO05D004624 6.0e-43 179.5 227 41.9
Sed0019119 Sechium edule HOM05D004174 ORTHO05D004624 6.0e-43 179.5 232 40.9
Carub.0006s1845 Capsella rubella HOM05D004174 ORTHO05D004624 7.8e-43 179.1 234 41.5
TAR383G0558 Trochodendron aralioides HOM05D004174 ORTHO05D004624 7.8e-43 179.1 227 41.4
MSTRG.19607 Avicennia marina HOM05D004174 ORTHO05D004624 1.0e-42 178.7 228 41.2
SGA_v2.0_scaffold229G43324 Striga asiatica HOM05D004174 ORTHO05D004624 1.0e-42 178.7 233 41.2
THA.LOC104811038 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 1.0e-42 178.7 227 42.3
vmacro06177 Vaccinium macrocarpon HOM05D004174 ORTHO05D004624 1.0e-42 178.7 227 41.9
GSVIVG01015501001 Vitis vinifera HOM05D004174 ORTHO05D004624 1.0e-42 178.7 227 42.7
C03p11380 Brassica napus HOM05D004174 ORTHO05D004624 1.3e-42 178.3 237 40.1
Phvul.009G197200 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 1.3e-42 178.3 228 42.5
Potri.018G070400 Populus trichocarpa HOM05D004174 ORTHO05D004624 1.3e-42 178.3 228 41.7
A02p06020 Brassica napus HOM05D004174 ORTHO05D004624 1.7e-42 177.9 234 41.9
BraA02t05553Z Brassica rapa HOM05D004174 ORTHO05D004624 1.7e-42 177.9 234 41.9
Rhsim03G0246500 Rhododendron simsii HOM05D004174 ORTHO05D004624 1.7e-42 177.9 291 36.8
VMungo1215G2625 Vigna mungo HOM05D004174 ORTHO05D004624 1.7e-42 177.9 233 42.5
BolC3t13612H Brassica oleracea HOM05D004174 ORTHO05D004624 2.3e-42 177.6 237 40.1
Gorai.004G277900 Gossypium raimondii HOM05D004174 ORTHO05D004624 2.3e-42 177.6 240 40.8
Manes.06G050000 Manihot esculenta HOM05D004174 ORTHO05D004624 2.3e-42 177.6 234 40.6
PSO170G6838 Papaver somniferum HOM05D004174 ORTHO05D004624 2.3e-42 177.6 227 41.9
Aqoxy7G02096 Aquilegia oxysepala HOM05D004174 ORTHO05D004624 3.0e-42 177.2 227 41.4
A03p09800 Brassica napus HOM05D004174 ORTHO05D004624 3.0e-42 177.2 281 38.1
BraA03t10295Z Brassica rapa HOM05D004174 ORTHO05D004624 3.0e-42 177.2 281 38.1
Lsat_1_v5_gn_7_42401 Lactuca sativa HOM05D004174 ORTHO05D004624 3.0e-42 177.2 228 41.2
Oeu058056.1 Olea europaea HOM05D004174 ORTHO05D004624 3.0e-42 177.2 228 41.7
PSO455G0049 Papaver somniferum HOM05D004174 ORTHO05D004624 3.0e-42 177.2 227 41.9
Sabra18G0061500 Salix brachista HOM05D004174 ORTHO05D004624 3.0e-42 177.2 288 37.2
Sp6g24340 Schrenkiella parvula HOM05D004174 ORTHO05D004624 3.0e-42 177.2 234 41.0
BcaB01g04811 Brassica carinata HOM05D004174 ORTHO05D004624 3.9e-42 176.8 234 40.6
SMO169G0291 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 3.9e-42 176.8 230 40.9
Phvul.003G162700 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 5.1e-42 176.4 233 42.1
Psat4g040360 Pisum sativum HOM05D004174 ORTHO05D004624 5.1e-42 176.4 231 40.7
arahy.Tifrunner.gnm1.ann1.E6UBTJ Arachis hypogaea HOM05D004174 ORTHO05D004624 8.6e-42 175.6 240 40.0
CANSAT11G0280 Cannabis sativa HOM05D004174 ORTHO05D004624 8.6e-42 175.6 231 39.8
COL.COLO4_17917 Corchorus olitorius HOM05D004174 ORTHO05D004624 8.6e-42 175.6 242 40.5
Duzib187G0531 Durio zibethinus HOM05D004174 ORTHO05D004624 1.9e-41 174.5 245 40.4
PGR102G0881 Punica granatum HOM05D004174 ORTHO05D004624 1.9e-41 174.5 228 41.7
Medtr4g113990 Medicago truncatula HOM05D004174 ORTHO05D004624 2.5e-41 174.1 230 40.9
SalBow3G2402 Salvia bowleyana HOM05D004174 ORTHO05D004624 2.5e-41 174.1 227 41.9
TPR.G10694 Trifolium pratense HOM05D004174 ORTHO05D004624 2.5e-41 174.1 231 40.3
HanXRQChr12g0368841 Helianthus annuus HOM05D004174 ORTHO05D004624 3.3e-41 173.7 227 39.6
HanXRQChr06g0180241 Helianthus annuus HOM05D004174 ORTHO05D004624 4.3e-41 173.3 228 40.4
Prupe.7G239600 Prunus persica HOM05D004174 ORTHO05D004624 4.3e-41 173.3 231 40.7
Ciclev10008313m.g Citrus clementina HOM05D004174 ORTHO05D004624 5.6e-41 172.9 412 32.0
Ah.14g080300 Amaranthus hybridus HOM05D004174 ORTHO05D004624 9.5e-41 172.2 231 40.3
Ah.02g124290 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.2e-40 171.8 233 39.9
Peaxi162Scf02490g00007 Petunia axillaris HOM05D004174 ORTHO05D004624 1.2e-40 171.8 228 40.8
Glyma.17G116600 Glycine max HOM05D004174 ORTHO05D004624 2.8e-40 170.6 301 34.2
Sopen06g031500 Solanum pennellii HOM05D004174 ORTHO05D004624 4.7e-40 169.9 227 40.1
BNapus_Darmor_BZH_scaffold_38p01820 Brassica napus HOM05D004174 ORTHO05D004624 1.4e-39 168.3 234 40.6
Solyc06g075080.4 Solanum lycopersicum HOM05D004174 ORTHO05D004624 1.4e-39 168.3 227 40.1
PGSC0003DMG400024321 Solanum tuberosum HOM05D004174 ORTHO05D004624 1.4e-39 168.3 227 40.1
Manes.14G130500 Manihot esculenta HOM05D004174 ORTHO05D004624 1.8e-39 167.9 227 40.5
Pp3c3_2090 Physcomitrium patens HOM05D004174 ORTHO05D004624 3.1e-39 167.2 257 36.6
CAN.G1966.1 Capsicum annuum HOM05D004174 ORTHO05D004624 4.0e-39 166.8 227 39.6
Nitab4.5_0006698g0010 Nicotiana tabacum HOM05D004174 ORTHO05D004624 4.0e-39 166.8 227 40.1
Lalb_Chr07g0178801 Lupinus albus HOM05D004174 ORTHO05D004624 6.8e-39 166.0 229 38.9
Mapoly0103s0044 Marchantia polymorpha HOM05D004174 ORTHO05D004624 1.2e-38 165.2 234 38.9
Nitab4.5_0000106g0230 Nicotiana tabacum HOM05D004174 ORTHO05D004624 2.6e-38 164.1 276 37.3
SEGI_17043 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 9.9e-38 162.2 270 37.4
Sed0008859 Sechium edule HOM05D004174 ORTHO05D004624 2.2e-37 161.0 230 37.8
SEGI_09002 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 4.9e-37 159.8 228 36.4
MELO3C026643.2 Cucumis melo HOM05D004174 ORTHO05D004624 6.4e-37 159.5 231 36.4
CSS0035220 Camellia sinensis var. sinensis HOM05D004174 ORTHO05D004624 8.4e-37 159.1 175 44.0
MD15G1175700 Malus domestica HOM05D004174 ORTHO05D004624 9.2e-36 155.6 282 34.4
Dinv41532 Davidia involucrata HOM05D004174 ORTHO05D004624 1.5e-33 148.3 151 48.3
AUR62033476 Chenopodium quinoa HOM05D004174 ORTHO05D004624 2.0e-30 137.9 232 34.9
Haze_27339 Corylus avellana HOM05D004174 ORTHO05D004624 2.0e-30 137.9 160 44.4
Gohir.A08G239300 Gossypium hirsutum HOM05D004174 ORTHO05D004624 3.5e-27 127.1 120 50.0
AUR62030487 Chenopodium quinoa HOM05D004174 ORTHO05D004624 1.3e-26 125.2 176 39.8
Lj7A632G45 Lonicera japonica HOM05D004174 ORTHO05D004624 3.0e-26 124.0 120 47.5
MCO10G159 Micromonas commoda HOM05D004174 ORTHO05D004624 3.0e-26 124.0 247 34.8
Cfa023976 Carpinus fangiana HOM05D003934 ORTHO05D005108 1.5e-25 121.7 262 32.4
Lj4g0002160 Lotus japonicus HOM05D004174 ORTHO05D004624 5.6e-25 119.8 120 48.3
Lj4A460T58 Lonicera japonica HOM05D004174 ORTHO05D004624 4.8e-24 116.7 252 35.3
ClCG06G010920 Citrullus lanatus HOM05D004174 ORTHO05D004624 8.1e-24 115.9 232 28.4
SEGI_13131 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 9.9e-22 109.0 205 37.1
SEGI_03330 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 2.9e-21 107.5 120 42.5
Glyma.05G008302 Glycine max HOM05D004174 ORTHO05D004624 2.4e-20 104.4 156 37.2
AUR62011109 Chenopodium quinoa HOM05D004174 ORTHO05D004624 4.2e-20 103.6 183 35.0
Mapoly0019s0154 Marchantia polymorpha HOM05D004174 ORTHO05D004624 1.8e-18 98.2 176 36.9
Pp3c14_12120 Physcomitrium patens HOM05D004174 ORTHO05D004624 2.3e-18 97.8 210 32.9
AUR62015314 Chenopodium quinoa HOM05D004174 ORTHO05D004624 8.1e-16 89.4 147 38.1
PRCOL_00006603 Prasinoderma coloniale HOM05D004174 ORTHO05D004624 8.1e-16 89.4 144 34.0
MD02G1035400 Malus domestica HOM05D004174 ORTHO05D004624 1.1e-15 89.0 83 48.2
Cre13.g582476 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 4.5e-14 83.6 185 33.0
CBR_g46446 Chara braunii HOM05D004174 ORTHO05D004624 4.2e-12 77.0 184 33.7
SMO141G0190 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 1.3e-08 65.5 117 35.9
Ah.12g053390 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.1e-07 62.4 61 45.9
Ah.12g055680 Amaranthus hybridus HOM05D004174 ORTHO05D004624 3.1e-07 60.8 61 44.3
Sabra06G0122300 Salix brachista HOM05D004174 ORTHO05D004624 4.5e-06 57.0 49 55.1


User provided reference genes

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