Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre09.g395621 Chlamydomonas reinhardtii HOM05D004576 ORTHO05D005321 1.0e-182 643.7 424 100.0
MCO15G223 Micromonas commoda HOM05D004576 ORTHO05D005321 1.9e-32 144.4 450 33.1
SMO118G0543 Selaginella moellendorffii HOM05D004576 ORTHO05D005321 1.5e-24 118.2 442 24.4
Os12g0137500 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 9.1e-22 109.0 448 25.7
AagrBONN_evm.TU.Sc2ySwM_368.1428 Anthoceros agrestis HOM05D004576 ORTHO05D005321 2.6e-21 107.5 413 29.3
VMungo1309G0981 Vigna mungo HOM05D005525 ORTHO05D005321 4.5e-21 106.7 448 25.7
Zm00001eb093250 Zea mays HOM05D004576 ORTHO05D005321 1.0e-20 105.5 453 25.2
SEGI_39808 Sequoiadendron giganteum HOM05D004576 ORTHO05D005321 1.3e-20 105.1 446 24.2
Thecc.03G200200 Theobroma cacao HOM05D004576 ORTHO05D005321 1.7e-20 104.8 450 24.2
Aa31LG9G16760 Aethionema arabicum HOM05D004576 ORTHO05D005321 2.2e-20 104.4 453 24.3
CBR_g54194 Chara braunii HOM05D004576 ORTHO05D005321 2.9e-20 104.0 480 26.7
THA.LOC104799972 Tarenaya hassleriana HOM05D004576 ORTHO05D005321 5.0e-20 103.2 453 25.8
A10p10480 Brassica napus HOM05D004576 ORTHO05D005321 8.5e-20 102.4 454 25.8
Phvul.009G051900 Phaseolus vulgaris HOM05D004576 ORTHO05D005321 8.5e-20 102.4 451 24.2
Thhalv10013705m.g Eutrema salsugineum HOM05D004576 ORTHO05D005321 1.1e-19 102.1 454 24.7
Aqoxy7G00528 Aquilegia oxysepala HOM05D004576 ORTHO05D005321 1.4e-19 101.7 454 26.0
CARHR265990 Cardamine hirsuta HOM05D004576 ORTHO05D005321 1.4e-19 101.7 454 24.7
PRCOL_00002440 Prasinoderma coloniale HOM05D004576 ORTHO05D005321 1.4e-19 101.7 450 27.1
BcaC04g20518 Brassica carinata HOM05D004576 ORTHO05D005321 1.9e-19 101.3 444 25.7
BraA10t43131Z Brassica rapa HOM05D004576 ORTHO05D005321 2.5e-19 100.9 454 25.6
C09p42710 Brassica napus HOM05D004576 ORTHO05D005321 5.5e-19 99.8 454 24.4
BolC9t57147H Brassica oleracea HOM05D004576 ORTHO05D005321 5.5e-19 99.8 454 24.4
TWI39G0751 Tripterygium wilfordii HOM05D004576 ORTHO05D005321 5.5e-19 99.8 455 26.2
Gohir.D04G001200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 1.6e-18 98.2 451 23.1
Gorai.012G002200 Gossypium raimondii HOM05D004576 ORTHO05D005321 1.6e-18 98.2 451 23.1
MD01G1217800 Malus domestica HOM05D004576 ORTHO05D005321 1.6e-18 98.2 452 23.9
AT5G53000 Arabidopsis thaliana HOM05D004576 ORTHO05D005321 2.1e-18 97.8 454 24.7
Cpa.g.sc3.95 Carica papaya HOM05D004576 ORTHO05D005321 2.1e-18 97.8 450 23.3
Lj4g0015379 Lotus japonicus HOM05D004576 ORTHO05D005321 2.1e-18 97.8 452 25.7
Gohir.A05G415000 Gossypium hirsutum HOM05D004576 ORTHO05D005321 2.7e-18 97.4 450 22.9
Hund11655 Selenicereus undatus HOM05D004576 ORTHO05D005321 2.7e-18 97.4 455 24.8
Lalb_Chr11g0066931 Lupinus albus HOM05D004576 ORTHO05D005321 3.6e-18 97.1 452 23.9
HPP92_010727 Vanilla planifolia HOM05D004576 ORTHO05D005321 3.6e-18 97.1 448 25.0
Glyma.04G234900 Glycine max HOM05D004576 ORTHO05D005321 4.7e-18 96.7 452 23.5
Manes.10G051900 Manihot esculenta HOM05D004576 ORTHO05D005321 4.7e-18 96.7 451 25.3
Sp6g15160 Schrenkiella parvula HOM05D004576 ORTHO05D005321 4.7e-18 96.7 455 24.2
CiPaw.06G045600 Carya illinoinensis HOM05D004576 ORTHO05D005321 1.0e-17 95.5 451 23.5
Pp3c27_2200 Physcomitrium patens HOM05D004576 ORTHO05D005321 1.0e-17 95.5 453 27.4
Pp3c27_2230 Physcomitrium patens HOM05D004576 ORTHO05D005321 1.0e-17 95.5 453 27.4
Duzib068G0175 Durio zibethinus HOM05D004576 ORTHO05D005321 1.4e-17 95.1 451 25.1
AL4G21090 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.8e-17 94.7 454 24.7
Eucgr.A01454 Eucalyptus grandis HOM05D004576 ORTHO05D005321 1.8e-17 94.7 451 22.0
SGA_v2.0_scaffold192G40533 Striga asiatica HOM05D004576 ORTHO05D005321 1.8e-17 94.7 452 25.9
arahy.Tifrunner.gnm1.ann1.EHU7FT Arachis hypogaea HOM05D004576 ORTHO05D005321 2.3e-17 94.4 427 23.4
arahy.Tifrunner.gnm1.ann1.S03LBS Arachis hypogaea HOM05D004576 ORTHO05D005321 2.3e-17 94.4 427 23.4
Carub.0008s1320 Capsella rubella HOM05D004576 ORTHO05D005321 2.3e-17 94.4 454 25.8
DCAR_020325 Daucus carota HOM05D004576 ORTHO05D005321 3.0e-17 94.0 431 26.0
Prupe.2G309200 Prunus persica HOM05D004576 ORTHO05D005321 3.0e-17 94.0 452 24.3
Hma1.2p1_1507F.1_g287630 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 3.9e-17 93.6 453 24.5
FAN06G1560 Fragaria x ananassa HOM05D004576 ORTHO05D005321 5.1e-17 93.2 454 24.9
Rhsim09G0206100 Rhododendron simsii HOM05D004576 ORTHO05D005321 5.1e-17 93.2 453 23.8
Ah.07g205540 Amaranthus hybridus HOM05D004576 ORTHO05D005321 6.7e-17 92.8 430 25.3
AUR62019411 Chenopodium quinoa HOM05D004576 ORTHO05D005321 6.7e-17 92.8 451 24.6
FvH4_7g31380 Fragaria vesca HOM05D004576 ORTHO05D005321 6.7e-17 92.8 454 24.9
FAN06G0548 Fragaria x ananassa HOM05D004576 ORTHO05D005321 6.7e-17 92.8 454 24.9
Psat5g076560 Pisum sativum HOM05D004576 ORTHO05D005321 6.7e-17 92.8 451 24.6
Sc25g0000910 Simmondsia chinensis HOM05D004576 ORTHO05D005321 6.7e-17 92.8 431 26.5
GSVIVG01038559001 Vitis vinifera HOM05D004576 ORTHO05D005321 6.7e-17 92.8 427 24.4
AL8G27600 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 8.8e-17 92.4 457 24.9
Potri.012G016500 Populus trichocarpa HOM05D004576 ORTHO05D005321 8.8e-17 92.4 453 23.0
COL.COLO4_16771 Corchorus olitorius HOM05D004576 ORTHO05D005321 1.1e-16 92.0 465 23.0
PGR042G3016 Punica granatum HOM05D004576 ORTHO05D005321 1.1e-16 92.0 454 23.6
ATR0763G025 Amborella trichopoda HOM05D004576 ORTHO05D005321 2.0e-16 91.3 454 26.2
Ciclev10020388m.g Citrus clementina HOM05D004576 ORTHO05D005321 2.0e-16 91.3 456 28.7
Atru.chr12.2224 Acer truncatum HOM05D004576 ORTHO05D005321 2.6e-16 90.9 453 22.5
MD07G1287100 Malus domestica HOM05D004576 ORTHO05D005321 4.4e-16 90.1 452 23.5
MD07G1287400 Malus domestica HOM05D004576 ORTHO05D005321 4.4e-16 90.1 452 23.5
CDE02G4477 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 5.7e-16 89.7 448 25.0
Ca_16714_v3 Cicer arietinum L. HOM05D004576 ORTHO05D005321 5.7e-16 89.7 451 22.8
FAN03G3343 Fragaria x ananassa HOM05D004576 ORTHO05D005321 5.7e-16 89.7 455 23.3
Medtr3g091640 Medicago truncatula HOM05D004576 ORTHO05D005321 5.7e-16 89.7 452 24.1
vmacro10126 Vaccinium macrocarpon HOM05D004576 ORTHO05D005321 5.7e-16 89.7 453 23.0
FAN01G2495 Fragaria x ananassa HOM05D004576 ORTHO05D005321 7.4e-16 89.4 454 25.1
Nn1g00276 Nelumbo nucifera HOM05D004576 ORTHO05D005321 7.4e-16 89.4 450 22.4
RcHm_v2.0_Chr1g0380451 Rosa chinensis HOM05D004576 ORTHO05D005321 9.7e-16 89.0 454 24.4
Actinidia06144 Actinidia chinensis HOM05D004576 ORTHO05D005321 1.3e-15 88.6 450 23.8
CSS0008628 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 1.3e-15 88.6 450 23.3
Haze_00204 Corylus avellana HOM05D004576 ORTHO05D005321 1.3e-15 88.6 450 24.0
Hma1.2p1_0404F.1_g145290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 1.3e-15 88.6 452 24.1
Hma1.2p1_1587F.1_g292290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 2.2e-15 87.8 452 24.1
EL10Ac3g05272 Beta vulgaris HOM05D004576 ORTHO05D005321 2.8e-15 87.4 429 23.8
Cc02_g01450 Coffea canephora HOM05D004576 ORTHO05D005321 2.8e-15 87.4 449 24.7
TAR633G0881 Trochodendron aralioides HOM05D004576 ORTHO05D005321 2.8e-15 87.4 452 22.3
Gohir.D12G250200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 3.7e-15 87.0 447 23.0
Gorai.008G268300 Gossypium raimondii HOM05D004576 ORTHO05D005321 3.7e-15 87.0 447 23.0
PSO063G4456 Papaver somniferum HOM05D004576 ORTHO05D005321 3.7e-15 87.0 454 24.0
Peaxi162Scf00441g00115 Petunia axillaris HOM05D004576 ORTHO05D005321 3.7e-15 87.0 450 27.1
Manes.07G095000 Manihot esculenta HOM05D004576 ORTHO05D005321 4.8e-15 86.7 453 24.9
ECA238G3082 Erigeron canadensis HOM05D004576 ORTHO05D005321 6.3e-15 86.3 459 25.3
Cfa016237 Carpinus fangiana HOM05D004576 ORTHO05D005321 1.4e-14 85.1 455 23.7
Nitab4.5_0003555g0040 Nicotiana tabacum HOM05D004576 ORTHO05D005321 1.4e-14 85.1 452 22.1
Sopen01g002110 Solanum pennellii HOM05D004576 ORTHO05D005321 1.4e-14 85.1 453 22.3
CAN.G575.13 Capsicum annuum HOM05D004576 ORTHO05D005321 1.8e-14 84.7 452 22.6
Zm00001eb196410 Zea mays HOM05D004576 ORTHO05D005321 1.8e-14 84.7 460 23.9
Dinv35342 Davidia involucrata HOM05D004576 ORTHO05D005321 2.4e-14 84.3 450 22.9
Solyc01g006110.3 Solanum lycopersicum HOM05D004576 ORTHO05D005321 2.4e-14 84.3 456 22.1
AUR62006083 Chenopodium quinoa HOM05D004576 ORTHO05D005321 3.1e-14 84.0 450 27.3
PGSC0003DMG400032187 Solanum tuberosum HOM05D004576 ORTHO05D005321 5.3e-14 83.2 453 22.3
unitig_748.g7294 Utricularia gibba HOM05D004576 ORTHO05D005321 5.3e-14 83.2 451 25.3
MBI06_g10867_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 7.0e-14 82.8 449 25.6
Potri.015G012200 Populus trichocarpa HOM05D004576 ORTHO05D005321 9.1e-14 82.4 454 21.8
SalBow4G0465 Salvia bowleyana HOM05D004576 ORTHO05D005321 9.1e-14 82.4 468 22.4
Sed0009575 Sechium edule HOM05D004576 ORTHO05D005321 9.1e-14 82.4 455 24.2
CAN.G140.19 Capsicum annuum HOM05D004576 ORTHO05D005321 1.2e-13 82.0 452 21.5
MSTRG.27022 Avicennia marina HOM05D004576 ORTHO05D005321 1.5e-13 81.6 453 26.3
Migut.F00204 Erythranthe guttata HOM05D004576 ORTHO05D005321 2.0e-13 81.3 430 24.9
PSO170G5996 Papaver somniferum HOM05D004576 ORTHO05D005321 2.0e-13 81.3 454 25.3
CANSAT21G1766 Cannabis sativa HOM05D004576 ORTHO05D005321 2.6e-13 80.9 455 21.8
ClCG09G018570 Citrullus lanatus HOM05D004576 ORTHO05D005321 5.9e-13 79.7 453 24.9
BolC2t08029H Brassica oleracea HOM05D004576 ORTHO05D005321 1.0e-12 79.0 418 27.8
CSS0016084 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 1.3e-12 78.6 424 23.1
MELO3C021489.2 Cucumis melo HOM05D004576 ORTHO05D005321 1.7e-12 78.2 453 25.2
TPR.G18754 Trifolium pratense HOM05D004576 ORTHO05D005321 1.7e-12 78.2 443 21.7
QL09p008710 Quercus lobata HOM05D004576 ORTHO05D005321 5.0e-12 76.6 489 21.5
Sed0014456 Sechium edule HOM05D004576 ORTHO05D005321 6.5e-12 76.3 454 23.3
CsaV3_5G037660 Cucumis sativus L. HOM05D004576 ORTHO05D005321 8.5e-12 75.9 453 25.2
HanXRQChr07g0206441 Helianthus annuus HOM05D004576 ORTHO05D005321 1.1e-11 75.5 432 24.1
Os11g0141000 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 2.5e-11 74.3 420 23.3
Mapoly0036s0077 Marchantia polymorpha HOM05D004576 ORTHO05D005321 7.2e-11 72.8 390 31.8
Nitab4.5_0001620g0020 Nicotiana tabacum HOM05D004576 ORTHO05D005321 9.4e-11 72.4 183 30.1
TAR629G2734 Trochodendron aralioides HOM05D004576 ORTHO05D005321 9.4e-11 72.4 433 21.7
Lsat_1_v5_gn_2_136141 Lactuca sativa HOM05D004576 ORTHO05D005321 2.7e-10 70.9 432 21.8
Oeu023658.2 Olea europaea HOM05D004576 ORTHO05D005321 1.0e-09 68.9 401 22.2
Lsat_1_v5_gn_3_139541 Lactuca sativa HOM05D004576 ORTHO05D005321 6.7e-09 66.2 455 25.5
CiPaw.05G197500 Carya illinoinensis HOM05D004576 ORTHO05D005321 8.8e-09 65.9 392 23.2
AL8G27540 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 5.7e-08 63.2 164 24.4
Sabra15G0009800 Salix brachista HOM05D004576 ORTHO05D005321 5.7e-08 63.2 433 23.3
Gohir.A12G249400 Gossypium hirsutum HOM05D004576 ORTHO05D005321 7.4e-08 62.8 218 27.5
Lj3C903T12 Lonicera japonica HOM05D004576 ORTHO05D005321 7.4e-08 62.8 223 28.3
PGSC0003DMG400004286 Solanum tuberosum HOM05D004576 ORTHO05D005321 7.4e-08 62.8 94 38.3
SHI02368 Sapria himalayana HOM05D004576 ORTHO05D005321 2.8e-07 60.8 463 22.9
Medtr1g050518 Medicago truncatula HOM05D004576 ORTHO05D005321 1.4e-06 58.5 220 30.0
Nitab4.5_0005477g0060 Nicotiana tabacum HOM05D004576 ORTHO05D005321 1.4e-06 58.5 221 25.3
Glyma.06G129650 Glycine max HOM05D005525 ORTHO05D006341 2.4e-06 57.8 276 21.0
Oeu041059.3 Olea europaea HOM05D004576 ORTHO05D005321 4.1e-06 57.0 462 21.0


User provided reference genes

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