Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre09.g394850 Chlamydomonas reinhardtii HOM05D005120 ORTHO05D006174 1.7e-258 895.6 487 100.0
AagrBONN_evm.TU.Sc2ySwM_117.3701 Anthoceros agrestis HOM05D005120 ORTHO05D006174 3.8e-80 303.1 439 43.7
Pp3c1_16500 Physcomitrium patens HOM05D005120 ORTHO05D006174 7.1e-79 298.9 435 44.4
Sed0007636 Sechium edule HOM05D005120 ORTHO05D006174 1.6e-78 297.7 457 41.6
PSO717G0011 Papaver somniferum HOM05D005120 ORTHO05D006174 1.0e-77 295.0 418 43.8
Mapoly0008s0007 Marchantia polymorpha HOM05D005120 ORTHO05D006174 1.3e-77 294.7 436 41.7
COL.COLO4_16896 Corchorus olitorius HOM05D005120 ORTHO05D006174 1.9e-76 290.8 455 41.1
PSO675G2578 Papaver somniferum HOM05D005120 ORTHO05D006174 4.3e-76 289.7 439 42.6
SalBow1G1967 Salvia bowleyana HOM05D005120 ORTHO05D006174 7.3e-76 288.9 442 41.2
Nitab4.5_0000543g0120 Nicotiana tabacum HOM05D005120 ORTHO05D006174 1.3e-75 288.1 415 43.1
Solyc08g076290.3 Solanum lycopersicum HOM05D005120 ORTHO05D006174 1.6e-75 287.7 447 40.7
Sopen08g024900 Solanum pennellii HOM05D005120 ORTHO05D006174 1.6e-75 287.7 447 40.7
Nitab4.5_0006395g0010 Nicotiana tabacum HOM05D005120 ORTHO05D006174 2.1e-75 287.3 415 42.7
Oeu042231.1 Olea europaea HOM05D005120 ORTHO05D006174 2.1e-75 287.3 435 40.7
CANSAT21G0750 Cannabis sativa HOM05D005120 ORTHO05D006174 2.8e-75 287.0 445 41.6
PGSC0003DMG402009291 Solanum tuberosum HOM05D005120 ORTHO05D006174 3.6e-75 286.6 434 41.2
Glyma.01G009900 Glycine max HOM05D005120 ORTHO05D006174 4.8e-75 286.2 440 40.7
Glyma.09G211200 Glycine max HOM05D005120 ORTHO05D006174 6.2e-75 285.8 436 41.1
Nn1g01918 Nelumbo nucifera HOM05D005120 ORTHO05D006174 8.1e-75 285.4 415 42.7
Os01g0511600 Oryza sativa ssp. japonica HOM05D005120 ORTHO05D006174 1.1e-74 285.0 430 41.4
CsaV3_3G030430 Cucumis sativus L. HOM05D005120 ORTHO05D006174 1.4e-74 284.6 452 40.5
Aa31LG2G13920 Aethionema arabicum HOM05D005120 ORTHO05D006174 2.4e-74 283.9 415 42.9
ClCG07G002270 Citrullus lanatus HOM05D005120 ORTHO05D006174 2.4e-74 283.9 445 40.7
VMungo0251G1066 Vigna mungo HOM05D005120 ORTHO05D006174 2.4e-74 283.9 445 41.6
Duzib205G1724 Durio zibethinus HOM05D005120 ORTHO05D006174 3.1e-74 283.5 438 40.6
Aqoxy7G00879 Aquilegia oxysepala HOM05D005120 ORTHO05D006174 5.3e-74 282.7 415 42.4
Migut.A00586 Erythranthe guttata HOM05D005120 ORTHO05D006174 5.3e-74 282.7 423 40.9
Phvul.003G274000 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 5.3e-74 282.7 439 41.7
Sabra03G0067700 Salix brachista HOM05D005120 ORTHO05D006174 6.9e-74 282.3 447 39.6
Thecc.03G314000 Theobroma cacao HOM05D005120 ORTHO05D006174 6.9e-74 282.3 447 40.0
Phvul.002G132800 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 9.0e-74 282.0 414 43.2
PRCOL_00000663 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 9.0e-74 282.0 434 41.5
MELO3C026723.2 Cucumis melo HOM05D005120 ORTHO05D006174 1.2e-73 281.6 456 40.4
Potri.003G099600 Populus trichocarpa HOM05D005120 ORTHO05D006174 1.2e-73 281.6 447 39.6
GSVIVG01029984001 Vitis vinifera HOM05D005120 ORTHO05D006174 1.2e-73 281.6 427 41.9
BraA09t38958Z Brassica rapa HOM05D005120 ORTHO05D006174 1.5e-73 281.2 415 41.2
Cc08_g03980 Coffea canephora HOM05D005120 ORTHO05D006174 1.5e-73 281.2 415 42.4
Gorai.003G186700 Gossypium raimondii HOM05D005120 ORTHO05D006174 1.5e-73 281.2 445 40.7
BcaC05g27233 Brassica carinata HOM05D005120 ORTHO05D006174 2.0e-73 280.8 415 41.2
Gohir.D03G177466 Gossypium hirsutum HOM05D005120 ORTHO05D006174 2.0e-73 280.8 445 40.7
HanXRQChr02g0050021 Helianthus annuus HOM05D005120 ORTHO05D006174 2.0e-73 280.8 415 43.1
Peaxi162Scf00408g00023 Petunia axillaris HOM05D005120 ORTHO05D006174 2.0e-73 280.8 411 42.1
PGR042G0860 Punica granatum HOM05D005120 ORTHO05D006174 2.0e-73 280.8 441 40.4
Eucgr.E01259 Eucalyptus grandis HOM05D005120 ORTHO05D006174 2.6e-73 280.4 439 41.0
Gohir.A03G000018 Gossypium hirsutum HOM05D005120 ORTHO05D006174 2.6e-73 280.4 445 40.7
THA.LOC104798500 Tarenaya hassleriana HOM05D005120 ORTHO05D006174 3.4e-73 280.0 445 40.0
BraA05t21413Z Brassica rapa HOM05D005120 ORTHO05D006174 4.5e-73 279.6 437 40.3
CARHR031430 Cardamine hirsuta HOM05D005120 ORTHO05D006174 5.8e-73 279.3 415 41.0
Sed0003941 Sechium edule HOM05D005120 ORTHO05D006174 5.8e-73 279.3 439 40.8
Sc07g0008440 Simmondsia chinensis HOM05D005120 ORTHO05D006174 5.8e-73 279.3 415 41.7
C05p31470 Brassica napus HOM05D005120 ORTHO05D006174 7.6e-73 278.9 415 41.0
BolC5t31871H Brassica oleracea HOM05D005120 ORTHO05D006174 7.6e-73 278.9 415 41.0
MBI04_g36023_MAGBIO Magnolia biondii HOM05D005120 ORTHO05D006174 7.6e-73 278.9 415 42.4
RcHm_v2.0_Chr7g0212851 Rosa chinensis HOM05D005120 ORTHO05D006174 7.6e-73 278.9 451 39.7
AT1G32080 Arabidopsis thaliana HOM05D005120 ORTHO05D006174 9.9e-73 278.5 415 40.7
MSTRG.11896 Avicennia marina HOM05D005120 ORTHO05D006174 9.9e-73 278.5 445 40.0
Cpa.g.sc757.1 Carica papaya HOM05D005120 ORTHO05D006174 9.9e-73 278.5 415 41.0
AL1G46150 Arabidopsis lyrata HOM05D005120 ORTHO05D006174 1.3e-72 278.1 415 40.7
FvH4_5g23540 Fragaria vesca HOM05D005120 ORTHO05D006174 1.7e-72 277.7 434 40.6
FAN18G1216 Fragaria x ananassa HOM05D005120 ORTHO05D006174 2.2e-72 277.3 434 40.6
FAN18G2593 Fragaria x ananassa HOM05D005120 ORTHO05D006174 2.2e-72 277.3 434 40.6
SGA_v2.0_scaffold42G16013 Striga asiatica HOM05D005120 ORTHO05D006174 2.2e-72 277.3 413 41.6
Rhsim11G0027600 Rhododendron simsii HOM05D005120 ORTHO05D006174 2.9e-72 276.9 439 39.9
Sp1g27750 Schrenkiella parvula HOM05D005120 ORTHO05D006174 2.9e-72 276.9 415 41.4
BcaB03g13768 Brassica carinata HOM05D005120 ORTHO05D006174 3.8e-72 276.6 437 39.8
FAN04G0205 Fragaria x ananassa HOM05D005120 ORTHO05D006174 3.8e-72 276.6 435 40.5
FAN08G2640 Fragaria x ananassa HOM05D005120 ORTHO05D006174 3.8e-72 276.6 440 40.2
Hund11160 Selenicereus undatus HOM05D005120 ORTHO05D006174 3.8e-72 276.6 469 39.2
Lj4g0011317 Lotus japonicus HOM05D005120 ORTHO05D006174 4.9e-72 276.2 415 42.2
Manes.17G006500 Manihot esculenta HOM05D005120 ORTHO05D006174 4.9e-72 276.2 465 37.8
Hund14388 Selenicereus undatus HOM05D005120 ORTHO05D006174 4.9e-72 276.2 451 40.1
BcaC05g27930 Brassica carinata HOM05D005120 ORTHO05D006174 8.4e-72 275.4 437 39.6
CiPaw.11G101100 Carya illinoinensis HOM05D005120 ORTHO05D006174 1.1e-71 275.0 452 38.9
Glyma.16G095100 Glycine max HOM05D005120 ORTHO05D006174 1.1e-71 275.0 453 40.0
Carub.0001s3040 Capsella rubella HOM05D005120 ORTHO05D006174 1.4e-71 274.6 415 40.5
Thhalv10007389m.g Eutrema salsugineum HOM05D005120 ORTHO05D006174 1.4e-71 274.6 415 40.5
CDE06G0533 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 2.4e-71 273.9 419 41.1
AUR62007376 Chenopodium quinoa HOM05D005120 ORTHO05D006174 2.4e-71 273.9 405 42.5
Aa31LG2G11060 Aethionema arabicum HOM05D005120 ORTHO05D006174 4.2e-71 273.1 415 41.9
TWI60G0565 Tripterygium wilfordii HOM05D005120 ORTHO05D006174 4.2e-71 273.1 439 40.3
SGA_v2.0_scaffold89G27426 Striga asiatica HOM05D005120 ORTHO05D006174 5.4e-71 272.7 415 41.2
CAN.G773.16 Capsicum annuum HOM05D005120 ORTHO05D006174 7.1e-71 272.3 417 41.5
Ca_22546_v3 Cicer arietinum L. HOM05D005120 ORTHO05D006174 7.1e-71 272.3 406 42.6
Cfa012552 Carpinus fangiana HOM05D005120 ORTHO05D006174 9.3e-71 271.9 415 41.0
MD06G1023600 Malus domestica HOM05D005120 ORTHO05D006174 1.2e-70 271.6 415 41.0
QL12p000342 Quercus lobata HOM05D005120 ORTHO05D006174 1.6e-70 271.2 414 40.8
ATR0829G037 Amborella trichopoda HOM05D005120 ORTHO05D006174 2.7e-70 270.4 446 40.1
arahy.Tifrunner.gnm1.ann1.H9FFKJ Arachis hypogaea HOM05D005120 ORTHO05D006174 2.7e-70 270.4 438 39.3
Dinv29029 Davidia involucrata HOM05D005120 ORTHO05D006174 2.7e-70 270.4 416 39.9
Prupe.5G024500 Prunus persica HOM05D005120 ORTHO05D006174 2.7e-70 270.4 415 40.2
TAR374G0846 Trochodendron aralioides HOM05D005120 ORTHO05D006174 2.7e-70 270.4 456 39.5
Ah.07g201110 Amaranthus hybridus HOM05D005120 ORTHO05D006174 3.5e-70 270.0 446 39.2
BcaB07g32869 Brassica carinata HOM05D005120 ORTHO05D006174 6.0e-70 269.2 415 40.7
Lalb_Chr16g0391911 Lupinus albus HOM05D005120 ORTHO05D006174 6.0e-70 269.2 415 40.7
Medtr8g070830 Medicago truncatula HOM05D005120 ORTHO05D006174 6.0e-70 269.2 441 39.7
vmacro00236 Vaccinium macrocarpon HOM05D005120 ORTHO05D006174 1.0e-69 268.5 445 39.6
Lsat_1_v5_gn_6_17781 Lactuca sativa HOM05D005120 ORTHO05D006174 1.3e-69 268.1 472 40.3
AUR62018612 Chenopodium quinoa HOM05D005120 ORTHO05D006174 3.9e-69 266.5 480 37.9
A05p25290 Brassica napus HOM05D005120 ORTHO05D006174 6.7e-69 265.8 423 39.7
Zm00001eb025160 Zea mays HOM05D005120 ORTHO05D006174 1.5e-68 264.6 445 39.3
Actinidia27272 Actinidia chinensis HOM05D005120 ORTHO05D006174 3.3e-68 263.5 403 41.2
Nn3g19343 Nelumbo nucifera HOM05D005120 ORTHO05D006174 4.3e-68 263.1 427 39.1
C05p39360 Brassica napus HOM05D005120 ORTHO05D006174 1.3e-67 261.5 423 39.0
BolC5t32672H Brassica oleracea HOM05D005120 ORTHO05D006174 1.3e-67 261.5 423 39.0
Lalb_Chr16g0380871 Lupinus albus HOM05D005120 ORTHO05D006174 2.8e-67 260.4 455 38.5
Psat4g111760 Pisum sativum HOM05D005120 ORTHO05D006174 2.8e-67 260.4 415 40.0
arahy.Tifrunner.gnm1.ann1.PMQ83Q Arachis hypogaea HOM05D005120 ORTHO05D006174 6.2e-67 259.2 405 40.2
TPR.G6179 Trifolium pratense HOM05D005120 ORTHO05D006174 8.1e-67 258.8 472 37.7
A09p34100 Brassica napus HOM05D005120 ORTHO05D006174 9.0e-66 255.4 387 40.8
Atru.chr6.1569 Acer truncatum HOM05D005120 ORTHO05D006174 2.6e-65 253.8 416 39.4
Lj8A318T44 Lonicera japonica HOM05D005120 ORTHO05D006174 2.6e-65 253.8 446 36.5
ECA233G2235 Erigeron canadensis HOM05D005120 ORTHO05D006174 3.4e-65 253.4 423 40.9
arahy.Tifrunner.gnm1.ann1.1W9K9Y Arachis hypogaea HOM05D005120 ORTHO05D006174 1.4e-63 248.1 413 39.0
arahy.Tifrunner.gnm1.ann1.5B6WJ4 Arachis hypogaea HOM05D005120 ORTHO05D006174 1.4e-63 248.1 413 39.0
PRCOL_00006607 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 2.4e-63 247.3 452 39.4
EL10Ac5g11981 Beta vulgaris HOM05D005120 ORTHO05D006174 5.5e-63 246.1 438 38.4
Haze_08107 Corylus avellana HOM05D005120 ORTHO05D006174 7.1e-63 245.7 469 36.5
unitig_747.g21935 Utricularia gibba HOM05D005120 ORTHO05D006174 1.6e-62 244.6 456 36.8
SMO347G0341 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 1.8e-61 241.1 365 44.7
DCAR_004262 Daucus carota HOM05D005120 ORTHO05D006174 2.1e-59 234.2 446 37.4
CSS0018999 Camellia sinensis var. sinensis HOM05D005120 ORTHO05D006174 2.6e-57 227.3 421 37.8
Atru.chr6.1566 Acer truncatum HOM05D005120 ORTHO05D006174 1.4e-55 221.5 416 38.5
Pp3c4_7680 Physcomitrium patens HOM05D005120 ORTHO05D006174 3.2e-47 193.7 401 33.2
SMO367G1009 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 1.5e-44 184.9 383 32.4
Atru.chr6.1568 Acer truncatum HOM05D005120 ORTHO05D006174 2.6e-41 174.1 228 44.3
Actinidia01339 Actinidia chinensis HOM05D005120 ORTHO05D006174 1.7e-40 171.4 376 35.4
Dinv06901 Davidia involucrata HOM05D005120 ORTHO05D006174 1.8e-34 151.4 303 35.3
CBR_g23155 Chara braunii HOM05D005120 ORTHO05D006174 2.4e-34 151.0 156 54.5
Ciclev10003461m.g Citrus clementina HOM05D005120 ORTHO05D006174 9.1e-34 149.1 265 37.0
Glyma.08G265967 Glycine max HOM05D005120 ORTHO05D006174 3.8e-32 143.7 164 49.4
AagrBONN_evm.TU.Sc2ySwM_368.2516 Anthoceros agrestis HOM05D005120 ORTHO05D006174 5.0e-32 143.3 422 30.1
CANSAT64G2484 Cannabis sativa HOM05D005120 ORTHO05D006174 2.3e-29 134.4 166 47.0
Lalb_Chr16g0380881 Lupinus albus HOM05D005120 ORTHO05D006174 1.0e-21 109.0 392 27.0
Atru.chr6.1567 Acer truncatum HOM05D005120 ORTHO05D006174 4.8e-19 100.1 186 37.1
Zm00001eb025140 Zea mays HOM05D005120 ORTHO05D006174 4.8e-19 100.1 222 36.5
FAN13G2921 Fragaria x ananassa HOM05D005120 ORTHO05D006174 5.3e-18 96.7 285 30.5
PRCOL_00005007 Prasinoderma coloniale HOM05D013059 ORTHO05D014381 4.2e-15 87.0 260 31.2
CBR_g23153 Chara braunii HOM05D005120 ORTHO05D006174 8.0e-14 82.8 187 36.9
SEGI_28661 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 3.0e-13 80.9 136 41.2
PGR044G1750 Punica granatum HOM05D005120 ORTHO05D006174 1.1e-10 72.4 119 42.9
MCO13G610 Micromonas commoda HOM05D005120 ORTHO05D006174 2.4e-10 71.2 282 27.3
PRCOL_00001036 Prasinoderma coloniale HOM05D001145 ORTHO05D014381 2.5e-07 61.2 436 24.3
VMungo0647G0996 Vigna mungo HOM05D005120 ORTHO05D006174 1.6e-06 58.5 97 39.2
CARHR291910 Cardamine hirsuta HOM05D005120 ORTHO05D006174 8.0e-06 56.2 77 42.9


User provided reference genes

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