Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre09.g394584 Chlamydomonas reinhardtii HOM05D006519 ORTHO05D008306 2.3e-210 735.7 489 100.0
Mapoly0003s0145 Marchantia polymorpha HOM05D006519 ORTHO05D008306 8.8e-53 212.2 306 43.1
Pp3c21_11830 Physcomitrium patens HOM05D006519 ORTHO05D008306 1.1e-52 211.8 309 41.1
Lj4g0003537 Lotus japonicus HOM05D006519 ORTHO05D008306 1.0e-48 198.7 314 39.2
Zm00001eb279990 Zea mays HOM05D006519 ORTHO05D008306 5.0e-48 196.4 301 41.2
Sc12g0005660 Simmondsia chinensis HOM05D006519 ORTHO05D008306 7.9e-46 189.1 305 39.7
DCAR_031285 Daucus carota HOM05D006519 ORTHO05D008306 3.9e-45 186.8 305 39.7
SMO236G0037 Selaginella moellendorffii HOM05D006519 ORTHO05D008306 5.2e-45 186.4 299 38.5
Hund02710 Selenicereus undatus HOM05D006519 ORTHO05D008306 1.5e-44 184.9 306 38.9
Nitab4.5_0003386g0010 Nicotiana tabacum HOM05D006519 ORTHO05D008306 2.0e-44 184.5 305 38.7
ATR0314G030 Amborella trichopoda HOM05D006519 ORTHO05D008306 2.6e-44 184.1 308 39.3
PGSC0003DMG400024585 Solanum tuberosum HOM05D006519 ORTHO05D008306 2.6e-44 184.1 305 38.4
Solyc03g113860.2 Solanum lycopersicum HOM05D006519 ORTHO05D008306 4.4e-44 183.3 305 38.7
HanXRQChr09g0271821 Helianthus annuus HOM05D006519 ORTHO05D008306 5.7e-44 183.0 305 39.3
Nn3g17016 Nelumbo nucifera HOM05D006519 ORTHO05D008306 5.7e-44 183.0 305 37.7
Potri.012G076100 Populus trichocarpa HOM05D006519 ORTHO05D008306 5.7e-44 183.0 304 38.2
Actinidia34959 Actinidia chinensis HOM05D006519 ORTHO05D008306 7.4e-44 182.6 305 39.0
CSS0018091 Camellia sinensis var. sinensis HOM05D006519 ORTHO05D008306 7.4e-44 182.6 305 40.3
RcHm_v2.0_Chr7g0179701 Rosa chinensis HOM05D006519 ORTHO05D008306 7.4e-44 182.6 334 36.8
CSS0037543 Camellia sinensis var. sinensis HOM05D006519 ORTHO05D008306 9.7e-44 182.2 305 39.7
Sopen03g032910 Solanum pennellii HOM05D006519 ORTHO05D008306 9.7e-44 182.2 305 38.7
CAN.G853.13 Capsicum annuum HOM05D006519 ORTHO05D008306 1.3e-43 181.8 305 37.7
ECA232G3316 Erigeron canadensis HOM05D006519 ORTHO05D008306 1.3e-43 181.8 305 39.7
Cc04_g13570 Coffea canephora HOM05D006519 ORTHO05D008306 1.7e-43 181.4 305 39.0
Migut.I00056 Erythranthe guttata HOM05D006519 ORTHO05D008306 1.7e-43 181.4 323 37.2
TAR629G1196 Trochodendron aralioides HOM05D006519 ORTHO05D008306 1.7e-43 181.4 305 38.7
MBI14_g12785_MAGBIO Magnolia biondii HOM05D006519 ORTHO05D008306 2.8e-43 180.6 305 39.3
Oeu016332.2 Olea europaea HOM05D006519 ORTHO05D008306 2.8e-43 180.6 307 37.8
Psat0s1227g0160 Pisum sativum HOM05D006519 ORTHO05D008306 2.8e-43 180.6 305 36.1
Ciclev10021480m.g Citrus clementina HOM05D006519 ORTHO05D008306 3.7e-43 180.3 305 37.0
Medtr4g106410 Medicago truncatula HOM05D006519 ORTHO05D008306 3.7e-43 180.3 313 35.5
TPR.G37507 Trifolium pratense HOM05D006519 ORTHO05D008306 3.7e-43 180.3 314 35.7
Ah.11g046180 Amaranthus hybridus HOM05D006519 ORTHO05D008306 4.8e-43 179.9 306 37.6
CiPaw.11G031700 Carya illinoinensis HOM05D006519 ORTHO05D008306 4.8e-43 179.9 306 38.2
FvH4_5g16400 Fragaria vesca HOM05D006519 ORTHO05D008306 4.8e-43 179.9 305 39.3
FAN18G3891 Fragaria x ananassa HOM05D006519 ORTHO05D008306 4.8e-43 179.9 305 39.3
Glyma.05G033800 Glycine max HOM05D006519 ORTHO05D008306 4.8e-43 179.9 305 36.1
Sabra12G0054300 Salix brachista HOM05D006519 ORTHO05D008306 4.8e-43 179.9 304 37.5
BcaB01g02918 Brassica carinata HOM05D006519 ORTHO05D008306 8.2e-43 179.1 307 37.5
Carub.0008s1012 Capsella rubella HOM05D006519 ORTHO05D008306 8.2e-43 179.1 306 37.9
CANSAT80G0931 Cannabis sativa HOM05D006519 ORTHO05D008306 1.1e-42 178.7 305 37.4
CsaV3_1G008220 Cucumis sativus L. HOM05D006519 ORTHO05D008306 1.1e-42 178.7 305 37.0
A03p27660 Brassica napus HOM05D006519 ORTHO05D008306 1.4e-42 178.3 305 37.0
BraA03t11979Z Brassica rapa HOM05D006519 ORTHO05D008306 1.4e-42 178.3 305 37.0
Duzib068G0259 Durio zibethinus HOM05D006519 ORTHO05D008306 1.4e-42 178.3 305 37.0
Sed0010209 Sechium edule HOM05D006519 ORTHO05D008306 1.4e-42 178.3 314 37.6
FAN13G2537 Fragaria x ananassa HOM05D006519 ORTHO05D008306 2.4e-42 177.6 305 39.0
SalBow5G0752 Salvia bowleyana HOM05D006519 ORTHO05D008306 2.4e-42 177.6 313 37.7
Sp6g11980 Schrenkiella parvula HOM05D006519 ORTHO05D008306 2.4e-42 177.6 305 37.4
BcaC01g04830 Brassica carinata HOM05D006519 ORTHO05D008306 3.1e-42 177.2 305 36.7
Haze_07439 Corylus avellana HOM05D006519 ORTHO05D008306 3.1e-42 177.2 305 37.4
MELO3C002238.2 Cucumis melo HOM05D006519 ORTHO05D008306 3.1e-42 177.2 305 37.0
Lsat_1_v5_gn_4_73480 Lactuca sativa HOM05D006519 ORTHO05D008306 3.1e-42 177.2 305 36.7
SalBow5G4476 Salvia bowleyana HOM05D006519 ORTHO05D008306 3.1e-42 177.2 313 37.4
BolC3t15659H Brassica oleracea HOM05D006519 ORTHO05D008306 4.1e-42 176.8 305 36.4
PGR083G2560 Punica granatum HOM05D006519 ORTHO05D008306 4.1e-42 176.8 317 36.0
Ca_21889_v3 Cicer arietinum L. HOM05D006519 ORTHO05D008306 5.3e-42 176.4 299 37.1
Gorai.012G002000 Gossypium raimondii HOM05D006519 ORTHO05D008306 5.3e-42 176.4 305 36.1
AT5G50110 Arabidopsis thaliana HOM05D006519 ORTHO05D008306 7.0e-42 176.0 306 37.6
CARHR258520 Cardamine hirsuta HOM05D006519 ORTHO05D008306 1.2e-41 175.3 305 36.7
ClCG01G014120 Citrullus lanatus HOM05D006519 ORTHO05D008306 1.2e-41 175.3 327 36.4
FAN08G1114 Fragaria x ananassa HOM05D006519 ORTHO05D008306 1.2e-41 175.3 303 38.0
TWI81G0852 Tripterygium wilfordii HOM05D006519 ORTHO05D008306 2.0e-41 174.5 305 37.4
arahy.Tifrunner.gnm1.ann1.L198ZR Arachis hypogaea HOM05D006519 ORTHO05D008306 2.6e-41 174.1 305 36.7
C03p33370 Brassica napus HOM05D006519 ORTHO05D008306 2.6e-41 174.1 305 36.1
GSVIVG01007824001 Vitis vinifera HOM05D006519 ORTHO05D008306 2.6e-41 174.1 305 37.7
MCO15G300 Micromonas commoda HOM05D006519 ORTHO05D008306 3.5e-41 173.7 308 38.0
PSO591G0501 Papaver somniferum HOM05D006519 ORTHO05D008306 3.5e-41 173.7 334 35.3
arahy.Tifrunner.gnm1.ann1.IBQC5J Arachis hypogaea HOM05D006519 ORTHO05D008306 4.5e-41 173.3 305 36.7
Prupe.5G179000 Prunus persica HOM05D006519 ORTHO05D008306 4.5e-41 173.3 305 38.0
MSTRG.11426 Avicennia marina HOM05D006519 ORTHO05D008306 2.2e-40 171.0 298 38.6
Gohir.D04G001000 Gossypium hirsutum HOM05D006519 ORTHO05D008306 2.2e-40 171.0 305 36.1
Lalb_Chr07g0182571 Lupinus albus HOM05D006519 ORTHO05D008306 2.2e-40 171.0 305 35.4
THA.LOC104809258 Tarenaya hassleriana HOM05D006519 ORTHO05D008306 3.8e-40 170.2 305 35.7
Aa31sc174G50 Aethionema arabicum HOM05D006519 ORTHO05D008306 5.0e-40 169.9 320 35.6
SGA_v2.0_scaffold467G52031 Striga asiatica HOM05D006519 ORTHO05D008306 5.0e-40 169.9 252 42.5
MD06G1181000 Malus domestica HOM05D006519 ORTHO05D008306 1.5e-39 168.3 305 36.7
EL10Ac5g10829 Beta vulgaris HOM05D006519 ORTHO05D008306 3.2e-39 167.2 321 35.2
AUR62008282 Chenopodium quinoa HOM05D006519 ORTHO05D008306 5.5e-39 166.4 234 43.2
Gohir.A05G415200 Gossypium hirsutum HOM05D006519 ORTHO05D008306 2.7e-38 164.1 297 34.7
Peaxi162Scf00017g02523 Petunia axillaris HOM05D006519 ORTHO05D008306 2.7e-38 164.1 284 36.6
Thecc.03G004500 Theobroma cacao HOM05D006519 ORTHO05D008306 4.7e-38 163.3 297 36.0
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 1.0e-37 162.2 226 41.6
COL.COLO4_04635 Corchorus olitorius HOM05D006519 ORTHO05D008306 1.4e-37 161.8 228 40.8
AagrBONN_evm.TU.Sc2ySwM_228.2029 Anthoceros agrestis HOM05D006519 ORTHO05D008306 1.8e-37 161.4 248 39.9
Eucgr.B00339 Eucalyptus grandis HOM05D006519 ORTHO05D008306 5.2e-37 159.8 283 37.5
AUR62031043 Chenopodium quinoa HOM05D006519 ORTHO05D008306 1.2e-36 158.7 210 43.8
AL8G24100 Arabidopsis lyrata HOM05D006519 ORTHO05D008306 2.6e-36 157.5 284 37.0
Phvul.003G197000 Phaseolus vulgaris HOM05D006519 ORTHO05D008306 2.6e-36 157.5 206 42.7
Thhalv10014373m.g Eutrema salsugineum HOM05D006519 ORTHO05D008306 1.4e-34 151.8 306 34.6
Atru.chr9.2404 Acer truncatum HOM05D006519 ORTHO05D008306 1.0e-32 145.6 305 34.4
Hma1.2p1_0002F.1_g002810 Hydrangea macrophylla HOM05D006519 ORTHO05D008306 1.0e-32 145.6 189 44.4
Rhsim12G0161700 Rhododendron simsii HOM05D006519 ORTHO05D008306 2.9e-32 144.1 230 39.6
vmacro16588 Vaccinium macrocarpon HOM05D006519 ORTHO05D008306 2.2e-27 127.9 141 53.2
Manes.06G100700 Manihot esculenta HOM05D006519 ORTHO05D008306 4.1e-26 123.6 186 40.3
HPP92_010835 Vanilla planifolia HOM05D006519 ORTHO05D008306 2.2e-24 117.9 192 40.6
MD14G1186900 Malus domestica HOM05D006519 ORTHO05D008306 2.9e-24 117.5 136 51.5
Nitab4.5_0001642g0020 Nicotiana tabacum HOM05D006519 ORTHO05D008306 2.5e-23 114.4 170 40.6
Lj9C454G3 Lonicera japonica HOM05D006519 ORTHO05D008306 6.8e-21 106.3 305 29.5
VMungo1215G1861 Vigna mungo HOM05D006519 ORTHO05D008306 8.8e-21 105.9 208 35.1
MD14G1186100 Malus domestica HOM05D006519 ORTHO05D008306 1.3e-19 102.1 202 33.7
Hma1.2p1_0002F.1_g002800 Hydrangea macrophylla HOM05D006519 ORTHO05D008306 6.3e-19 99.8 161 37.9
SEGI_15669 Sequoiadendron giganteum HOM05D006519 ORTHO05D008306 1.1e-18 99.0 169 34.9
CDE06G0478 Ceratophyllum demersum HOM05D006519 ORTHO05D008306 1.4e-18 98.6 83 55.4
Os06g0239000 Oryza sativa ssp. japonica HOM05D006519 ORTHO05D008306 1.8e-18 98.2 138 42.0
PRCOL_00000545 Prasinoderma coloniale HOM05D006519 ORTHO05D008306 9.2e-18 95.9 174 38.5
Glyma.17G093302 Glycine max HOM05D006519 ORTHO05D008306 1.6e-17 95.1 98 49.0
MD13G1183500 Malus domestica HOM05D006519 ORTHO05D008306 1.6e-17 95.1 159 35.8
Actinidia19081 Actinidia chinensis HOM05D006519 ORTHO05D008306 2.0e-12 78.2 177 32.2
Cpa.g.sc35.56 Carica papaya HOM05D006519 ORTHO05D008306 1.7e-11 75.1 137 35.8
arahy.Tifrunner.gnm1.ann1.KZGX7R Arachis hypogaea HOM05D006519 ORTHO05D008306 8.3e-11 72.8 138 32.6
SEGI_16810 Sequoiadendron giganteum HOM05D006519 ORTHO05D008306 3.2e-10 70.9 50 66.0
arahy.Tifrunner.gnm1.ann1.J4WABN Arachis hypogaea HOM05D006519 ORTHO05D008306 3.5e-09 67.4 134 30.6
C05p16930 Brassica napus HOM05D006519 ORTHO05D008306 4.6e-09 67.0 134 31.3
CBR_g30328 Chara braunii HOM05D000019 ORTHO05D000048 8.6e-08 62.8 123 35.0
HanXRQChr11g0328331 Helianthus annuus HOM05D006519 ORTHO05D008306 2.5e-07 61.2 122 33.6
Potri.015G071001 Populus trichocarpa HOM05D006519 ORTHO05D008306 6.2e-06 56.6 52 51.9


User provided reference genes

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