Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre09.g388986 Chlamydomonas reinhardtii HOM05D004574 ORTHO05D005612 0.0e+00 1194.5 1081 100.0
PRCOL_00005204 Prasinoderma coloniale HOM05D004574 ORTHO05D005612 3.5e-09 68.6 90 40.0
DCAR_017762 Daucus carota HOM05D004574 ORTHO05D005612 5.9e-09 67.8 60 51.7
Solyc07g007040.4 Solanum lycopersicum HOM05D004574 ORTHO05D005612 5.9e-09 67.8 59 57.6
Sopen07g003110 Solanum pennellii HOM05D004574 ORTHO05D005612 5.9e-09 67.8 59 57.6
MSTRG.19628 Avicennia marina HOM05D004574 ORTHO05D005612 1.0e-08 67.0 58 51.7
Cc06_g07390 Coffea canephora HOM05D004574 ORTHO05D005612 1.0e-08 67.0 62 53.2
ECA234G1322 Erigeron canadensis HOM05D004574 ORTHO05D005612 1.0e-08 67.0 59 54.2
Peaxi162Scf00347g00125 Petunia axillaris HOM05D004574 ORTHO05D005612 1.0e-08 67.0 113 34.5
Pp3c15_19210 Physcomitrium patens HOM05D004574 ORTHO05D005612 1.0e-08 67.0 64 51.6
Pp3c15_19211 Physcomitrium patens HOM05D004574 ORTHO05D005612 1.0e-08 67.0 64 51.6
vmacro21880 Vaccinium macrocarpon HOM05D004574 ORTHO05D005612 1.0e-08 67.0 115 35.7
CAN.G518.8 Capsicum annuum HOM05D004574 ORTHO05D005612 1.3e-08 66.6 59 55.9
CsaV3_1G028540 Cucumis sativus L. HOM05D004574 ORTHO05D005612 1.3e-08 66.6 113 35.4
Actinidia04251 Actinidia chinensis HOM05D004574 ORTHO05D005612 2.2e-08 65.9 113 33.6
MELO3C010260.2 Cucumis melo HOM05D004574 ORTHO05D005612 2.2e-08 65.9 113 35.4
Migut.J01279 Erythranthe guttata HOM05D004574 ORTHO05D005612 2.9e-08 65.5 58 51.7
Nitab4.5_0001151g0100 Nicotiana tabacum HOM05D004574 ORTHO05D005612 2.9e-08 65.5 59 54.2
Nitab4.5_0001671g0130 Nicotiana tabacum HOM05D004574 ORTHO05D005612 2.9e-08 65.5 59 54.2
Lj9A709T23 Lonicera japonica HOM05D004574 ORTHO05D005612 3.8e-08 65.1 58 53.4
Haze_19313 Corylus avellana HOM05D004574 ORTHO05D005612 5.0e-08 64.7 113 33.6
Manes.14G139500 Manihot esculenta HOM05D004574 ORTHO05D005612 5.0e-08 64.7 59 50.8
Actinidia21909 Actinidia chinensis HOM05D004574 ORTHO05D005612 6.5e-08 64.3 194 27.3
Thecc.09G142400 Theobroma cacao HOM05D004574 ORTHO05D005612 6.5e-08 64.3 187 28.9
PGR102G2914 Punica granatum HOM05D004574 ORTHO05D005612 8.5e-08 63.9 113 32.7
SGA_v2.0_scaffold229G43349 Striga asiatica HOM05D004574 ORTHO05D005612 8.5e-08 63.9 57 49.1
CSS0028433 Camellia sinensis var. sinensis HOM05D004574 ORTHO05D005612 1.1e-07 63.5 59 50.8
Cfa020884 Carpinus fangiana HOM05D004574 ORTHO05D005612 1.1e-07 63.5 50 60.0
Psat4g033240 Pisum sativum HOM05D004574 ORTHO05D005612 1.1e-07 63.5 113 33.6
Zm00001eb028250 Zea mays HOM05D004574 ORTHO05D005612 1.1e-07 63.5 115 33.9
arahy.Tifrunner.gnm1.ann1.J06XH2 Arachis hypogaea HOM05D004574 ORTHO05D005612 1.5e-07 63.2 113 32.7
arahy.Tifrunner.gnm1.ann1.YXSX85 Arachis hypogaea HOM05D004574 ORTHO05D005612 1.5e-07 63.2 113 32.7
Potri.018G113600 Populus trichocarpa HOM05D004574 ORTHO05D005612 1.5e-07 63.2 113 33.6
Sc18g0000060 Simmondsia chinensis HOM05D004574 ORTHO05D005612 1.5e-07 63.2 111 34.2
ECA236G2347 Erigeron canadensis HOM05D004574 ORTHO05D005612 1.9e-07 62.8 138 33.3
Hma1.2p1_1784F.1_g302190 Hydrangea macrophylla HOM05D004574 ORTHO05D005612 1.9e-07 62.8 54 53.7
Hma1.2p1_1784F.1_g302200 Hydrangea macrophylla HOM05D004574 ORTHO05D005612 1.9e-07 62.8 54 53.7
Lsat_1_v5_gn_5_90461 Lactuca sativa HOM05D004574 ORTHO05D005612 1.9e-07 62.8 58 51.7
Lsat_1_v5_gn_8_60221 Lactuca sativa HOM05D004574 ORTHO05D005612 1.9e-07 62.8 62 48.4
Potri.006G189501 Populus trichocarpa HOM05D004574 ORTHO05D005612 1.9e-07 62.8 56 51.8
QL02p091406 Quercus lobata HOM05D004574 ORTHO05D005612 1.9e-07 62.8 113 33.6
RcHm_v2.0_Chr2g0086551 Rosa chinensis HOM05D004574 ORTHO05D005612 1.9e-07 62.8 113 34.5
Eucgr.L03484 Eucalyptus grandis HOM05D004574 ORTHO05D005612 2.5e-07 62.4 64 46.9
MD02G1012700 Malus domestica HOM05D004574 ORTHO05D005612 3.2e-07 62.0 115 31.3
HanXRQChr12g0357011 Helianthus annuus HOM05D004574 ORTHO05D005612 4.2e-07 61.6 54 53.7
PRCOL_00003671 Prasinoderma coloniale HOM05D002899 ORTHO05D003850 4.2e-07 61.6 53 47.2
Ah.09g223910 Amaranthus hybridus HOM05D004574 ORTHO05D005612 5.5e-07 61.2 111 34.2
Nn2g12259 Nelumbo nucifera HOM05D004574 ORTHO05D005612 5.5e-07 61.2 59 49.2
Prupe.7G253700 Prunus persica HOM05D004574 ORTHO05D005612 5.5e-07 61.2 115 32.2
CBR_g21811 Chara braunii HOM05D004574 ORTHO05D005612 7.2e-07 60.8 67 47.8
COL.COLO4_24085 Corchorus olitorius HOM05D004574 ORTHO05D005612 7.2e-07 60.8 59 47.5
ClCG06G012070 Citrullus lanatus HOM05D004574 ORTHO05D005612 9.4e-07 60.5 199 27.1
Duzib168G1873 Durio zibethinus HOM05D004574 ORTHO05D005612 9.4e-07 60.5 113 33.6
Duzib187G1624 Durio zibethinus HOM05D004574 ORTHO05D005612 9.4e-07 60.5 113 32.7
ECA247G1966 Erigeron canadensis HOM05D000475 ORTHO05D000343 9.4e-07 60.5 59 47.5
Gohir.A06G049000 Gossypium hirsutum HOM05D004574 ORTHO05D005612 9.4e-07 60.5 113 32.7
Cpa.g.sc46.91 Carica papaya HOM05D004574 ORTHO05D005612 1.2e-06 60.1 57 47.4
CiPaw.16G117400 Carya illinoinensis HOM05D004574 ORTHO05D005612 1.2e-06 60.1 53 52.8
MD15G1158500 Malus domestica HOM05D004574 ORTHO05D005612 1.2e-06 60.1 115 30.4
Medtr4g116570 Medicago truncatula HOM05D004574 ORTHO05D005612 1.2e-06 60.1 113 32.7
CANSAT11G2415 Cannabis sativa HOM05D004574 ORTHO05D005612 1.6e-06 59.7 115 30.4
Ciclev10007567m.g Citrus clementina HOM05D004574 ORTHO05D005612 1.6e-06 59.7 53 50.9
Eucgr.L02096 Eucalyptus grandis HOM05D004574 ORTHO05D005612 1.6e-06 59.7 59 45.8
HanXRQChr05g0139651 Helianthus annuus HOM05D004574 ORTHO05D005612 1.6e-06 59.7 58 50.0
Cre07.g325713 Chlamydomonas reinhardtii HOM05D002899 ORTHO05D003850 2.1e-06 59.3 109 33.9
Eucgr.L02934 Eucalyptus grandis HOM05D004574 ORTHO05D005612 2.1e-06 59.3 59 45.8
Gohir.D06G048700 Gossypium hirsutum HOM05D004574 ORTHO05D005612 2.1e-06 59.3 59 45.8
Gorai.010G054900 Gossypium raimondii HOM05D004574 ORTHO05D005612 2.1e-06 59.3 111 32.4
Oeu040778.1 Olea europaea HOM05D004574 ORTHO05D005612 2.1e-06 59.3 93 34.4
HPP92_005314 Vanilla planifolia HOM05D004574 ORTHO05D005612 2.1e-06 59.3 71 40.8
VMungo1215G1939 Vigna mungo HOM05D004574 ORTHO05D005612 2.1e-06 59.3 113 31.0
AagrBONN_evm.TU.Sc2ySwM_340.341 Anthoceros agrestis HOM05D002899 ORTHO05D003850 2.7e-06 58.9 94 36.2
Ca_21611_v3 Cicer arietinum L. HOM05D004574 ORTHO05D005612 2.7e-06 58.9 113 31.9
MCO14G075 Micromonas commoda HOM05D004574 ORTHO05D005612 2.7e-06 58.9 70 47.1
Nn8g39728 Nelumbo nucifera HOM05D004574 ORTHO05D005612 2.7e-06 58.9 110 34.5
Hund14397 Selenicereus undatus HOM05D004574 ORTHO05D005612 2.7e-06 58.9 113 31.9
THA.LOC104815398 Tarenaya hassleriana HOM05D004574 ORTHO05D005612 2.7e-06 58.9 51 54.9
AagrBONN_evm.TU.Sc2ySwM_340.493 Anthoceros agrestis HOM05D004574 ORTHO05D005612 3.6e-06 58.5 113 36.3
BcaC05g29496 Brassica carinata HOM05D004574 ORTHO05D005612 3.6e-06 58.5 68 50.0
C05p58250 Brassica napus HOM05D004574 ORTHO05D005612 3.6e-06 58.5 68 50.0
BolC5t34479H Brassica oleracea HOM05D004574 ORTHO05D005612 3.6e-06 58.5 68 50.0
CDE05G2637 Ceratophyllum demersum HOM05D004574 ORTHO05D005612 3.6e-06 58.5 54 50.0
Glyma.13G156900 Glycine max HOM05D004574 ORTHO05D005612 3.6e-06 58.5 113 31.0
Sed0008757 Sechium edule HOM05D004574 ORTHO05D005612 3.6e-06 58.5 113 31.0
TWI34G0786 Tripterygium wilfordii HOM05D004574 ORTHO05D005612 3.6e-06 58.5 116 31.9
HPP92_005340 Vanilla planifolia HOM05D004574 ORTHO05D005612 3.6e-06 58.5 116 36.2
HPP92_017274 Vanilla planifolia HOM05D002899 ORTHO05D003850 3.6e-06 58.5 51 51.0
ATR0629G131 Amborella trichopoda HOM05D004574 ORTHO05D005612 4.7e-06 58.2 53 54.7
CBR_g50354 Chara braunii HOM05D002899 ORTHO05D003850 4.7e-06 58.2 56 46.4
MBI14_g15649_MAGBIO Magnolia biondii HOM05D004574 ORTHO05D005612 4.7e-06 58.2 112 32.1
Mapoly0074s0045 Marchantia polymorpha HOM05D004574 ORTHO05D005612 4.7e-06 58.2 52 51.9
Phvul.003G175300 Phaseolus vulgaris HOM05D004574 ORTHO05D005612 4.7e-06 58.2 113 31.0
Sabra06G0145700 Salix brachista HOM05D004574 ORTHO05D005612 4.7e-06 58.2 56 48.2
Dinv42911 Davidia involucrata HOM05D004574 ORTHO05D005612 6.1e-06 57.8 120 34.2
Dinv43190 Davidia involucrata HOM05D004574 ORTHO05D005612 6.1e-06 57.8 120 34.2
LjContig00357g0005900 Lotus japonicus HOM05D000237 ORTHO05D005612 6.1e-06 57.8 53 49.1
SEGI_33529 Sequoiadendron giganteum HOM05D004574 ORTHO05D005612 6.1e-06 57.8 71 43.7
FvH4_1g01590 Fragaria vesca HOM05D004574 ORTHO05D005612 8.0e-06 57.4 113 31.9
FAN19G2203 Fragaria x ananassa HOM05D004574 ORTHO05D005612 8.0e-06 57.4 113 31.9
FAN23G1466 Fragaria x ananassa HOM05D004574 ORTHO05D005612 8.0e-06 57.4 53 49.1
FAN28G2389 Fragaria x ananassa HOM05D004574 ORTHO05D005612 8.0e-06 57.4 113 31.9
Glyma.17G104500 Glycine max HOM05D004574 ORTHO05D005612 8.0e-06 57.4 113 30.1
Lj4g0023014 Lotus japonicus HOM05D004574 ORTHO05D005612 8.0e-06 57.4 53 49.1
Lalb_Chr12g0198521 Lupinus albus HOM05D004574 ORTHO05D005612 8.0e-06 57.4 113 30.1
Mapoly0046s0040 Marchantia polymorpha HOM05D004574 ORTHO05D010792 8.0e-06 57.4 72 43.1
Sabra18G0096500 Salix brachista HOM05D004574 ORTHO05D005612 8.0e-06 57.4 56 48.2


User provided reference genes

Program Settings