Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre08.g385700 Chlamydomonas reinhardtii HOM05D004415 ORTHO05D005198 8.0e-143 510.8 330 100.0
Mapoly0008s0129 Marchantia polymorpha HOM05D004415 ORTHO05D005198 1.1e-30 138.3 286 30.1
TPR.G22904 Trifolium pratense HOM05D004415 ORTHO05D005198 3.2e-30 136.7 270 30.4
Rhsim13G0126400 Rhododendron simsii HOM05D004415 ORTHO05D005198 6.0e-29 132.5 270 30.4
vmacro03476 Vaccinium macrocarpon HOM05D004415 ORTHO05D005198 7.8e-29 132.1 270 30.4
Medtr2g047110 Medicago truncatula HOM05D004415 ORTHO05D005198 1.0e-28 131.7 270 30.4
arahy.Tifrunner.gnm1.ann1.UW0JAL Arachis hypogaea HOM05D004415 ORTHO05D005198 1.7e-28 131.0 270 30.7
arahy.Tifrunner.gnm1.ann1.ZSFV9B Arachis hypogaea HOM05D004415 ORTHO05D005198 1.7e-28 131.0 270 30.7
AagrBONN_evm.TU.Sc2ySwM_368.3355 Anthoceros agrestis HOM05D004415 ORTHO05D005198 3.0e-28 130.2 271 29.9
MD00G1097300 Malus domestica HOM05D004415 ORTHO05D005198 3.0e-28 130.2 270 30.4
CsaV3_1G037760 Cucumis sativus L. HOM05D004415 ORTHO05D005198 6.6e-28 129.0 267 30.3
Actinidia29247 Actinidia chinensis HOM05D004415 ORTHO05D005198 8.6e-28 128.6 279 30.1
Ca_02386_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 1.1e-27 128.3 270 30.0
Migut.M01938 Erythranthe guttata HOM05D004415 ORTHO05D005198 1.1e-27 128.3 267 30.3
CSS0048897 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 1.5e-27 127.9 270 33.0
Oeu063146.1 Olea europaea HOM05D004415 ORTHO05D005198 1.5e-27 127.9 267 31.5
Phvul.009G218500 Phaseolus vulgaris HOM05D004415 ORTHO05D005198 1.9e-27 127.5 270 30.0
CBR_g24190 Chara braunii HOM05D004415 ORTHO05D005198 2.5e-27 127.1 277 28.5
MSTRG.7566 Avicennia marina HOM05D004415 ORTHO05D005198 3.3e-27 126.7 267 31.5
ClCG01G008890 Citrullus lanatus HOM05D004415 ORTHO05D005198 3.3e-27 126.7 267 30.3
Potri.011G155200 Populus trichocarpa HOM05D004415 ORTHO05D005198 4.3e-27 126.3 270 30.0
Psat1g018760 Pisum sativum HOM05D004415 ORTHO05D005198 5.6e-27 125.9 270 29.3
TWI38G1449 Tripterygium wilfordii HOM05D004415 ORTHO05D005198 5.6e-27 125.9 267 29.6
VMungo1309G0873 Vigna mungo HOM05D004415 ORTHO05D005198 5.6e-27 125.9 270 29.6
CSS0010489 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 7.3e-27 125.6 250 29.6
AagrBONN_evm.TU.Sc2ySwM_362.579 Anthoceros agrestis HOM05D004415 ORTHO05D005198 1.2e-26 124.8 271 29.2
Lj1A1155G52 Lonicera japonica HOM05D004415 ORTHO05D005198 1.2e-26 124.8 270 28.9
Sed0009944 Sechium edule HOM05D004415 ORTHO05D005198 1.6e-26 124.4 250 30.4
MELO3C021810.2 Cucumis melo HOM05D004415 ORTHO05D005198 2.1e-26 124.0 171 36.3
SalBow8G0313 Salvia bowleyana HOM05D004415 ORTHO05D005198 2.1e-26 124.0 279 29.7
Lalb_Chr11g0073471 Lupinus albus HOM05D004415 ORTHO05D005198 2.8e-26 123.6 270 28.5
Potri.001G440600 Populus trichocarpa HOM05D004415 ORTHO05D005198 2.8e-26 123.6 267 29.6
arahy.Tifrunner.gnm1.ann1.Z0R64B Arachis hypogaea HOM05D004415 ORTHO05D005198 3.6e-26 123.2 267 27.7
COL.COLO4_22898 Corchorus olitorius HOM05D004415 ORTHO05D005198 3.6e-26 123.2 270 29.3
Os04g0618500 Oryza sativa ssp. japonica HOM05D004415 ORTHO05D005198 4.7e-26 122.9 267 29.2
SalBow8G4844 Salvia bowleyana HOM05D004415 ORTHO05D005198 4.7e-26 122.9 267 30.0
Thecc.06G005600 Theobroma cacao HOM05D004415 ORTHO05D005198 4.7e-26 122.9 270 29.6
unitig_37.g12064 Utricularia gibba HOM05D004415 ORTHO05D005198 6.2e-26 122.5 267 27.7
CSS0002194 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 1.1e-25 121.7 270 29.3
CANSAT35G0835 Cannabis sativa HOM05D004415 ORTHO05D005198 1.1e-25 121.7 267 28.5
MSTRG.16315 Avicennia marina HOM05D004415 ORTHO05D005198 1.4e-25 121.3 267 30.3
Duzib235G0717 Durio zibethinus HOM05D004415 ORTHO05D005198 1.4e-25 121.3 270 28.9
MCO11G422 Micromonas commoda HOM05D004415 ORTHO05D005198 1.4e-25 121.3 282 30.9
Sabra16G0298000 Salix brachista HOM05D004415 ORTHO05D005198 1.4e-25 121.3 275 29.8
GSVIVG01037942001 Vitis vinifera HOM05D004415 ORTHO05D005198 1.4e-25 121.3 270 28.9
CiPaw.09G149000 Carya illinoinensis HOM05D004415 ORTHO05D005198 1.8e-25 120.9 270 28.5
Lalb_Chr08g0233111 Lupinus albus HOM05D004415 ORTHO05D005198 1.8e-25 120.9 270 29.3
Sed0021762 Sechium edule HOM05D004415 ORTHO05D005198 1.8e-25 120.9 267 28.8
TPR.G6264 Trifolium pratense HOM05D004415 ORTHO05D005198 1.8e-25 120.9 270 27.8
SGA_v2.0_scaffold298G47634 Striga asiatica HOM05D004415 ORTHO05D005198 2.3e-25 120.6 270 29.6
Ah.01g002800 Amaranthus hybridus HOM05D004415 ORTHO05D005198 3.1e-25 120.2 270 28.1
Hma1.2p1_0008F-2.1_g005810 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 3.1e-25 120.2 270 28.9
Sabra16G0300000 Salix brachista HOM05D004415 ORTHO05D005198 3.1e-25 120.2 171 35.7
HPP92_013188 Vanilla planifolia HOM05D004415 ORTHO05D005198 3.1e-25 120.2 267 28.8
Hund01093 Selenicereus undatus HOM05D004415 ORTHO05D005198 4.0e-25 119.8 280 27.9
CDE03G0179 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 5.2e-25 119.4 262 28.6
AUR62025006 Chenopodium quinoa HOM05D004415 ORTHO05D005198 5.2e-25 119.4 270 27.0
Sc17g0004090 Simmondsia chinensis HOM05D004415 ORTHO05D005198 5.2e-25 119.4 270 28.9
Glyma.09G083100 Glycine max HOM05D004415 ORTHO05D005198 6.8e-25 119.0 171 35.7
Solyc02g069640.3 Solanum lycopersicum HOM05D004415 ORTHO05D005198 8.9e-25 118.6 274 28.1
CAN.G954.7 Capsicum annuum HOM05D004415 ORTHO05D005198 1.2e-24 118.2 250 28.0
Ciclev10016110m.g Citrus clementina HOM05D004415 ORTHO05D005198 1.2e-24 118.2 267 28.8
Manes.16G062800 Manihot esculenta HOM05D004415 ORTHO05D005198 1.2e-24 118.2 267 28.8
Sabra11G0144600 Salix brachista HOM05D004415 ORTHO05D005198 1.2e-24 118.2 270 29.3
AUR62006530 Chenopodium quinoa HOM05D004415 ORTHO05D005198 1.5e-24 117.9 262 26.7
Gorai.010G247000 Gossypium raimondii HOM05D004415 ORTHO05D005198 1.5e-24 117.9 270 28.5
arahy.Tifrunner.gnm1.ann1.5MZ6ZS Arachis hypogaea HOM05D004415 ORTHO05D005198 2.0e-24 117.5 267 26.2
Cpa.g.sc173.46 Carica papaya HOM05D004415 ORTHO05D005198 2.6e-24 117.1 273 26.4
Eucgr.D01029 Eucalyptus grandis HOM05D004415 ORTHO05D005198 2.6e-24 117.1 257 28.8
Sopen02g018770 Solanum pennellii HOM05D004415 ORTHO05D005198 2.6e-24 117.1 270 28.1
Glyma.15G191200 Glycine max HOM05D004415 ORTHO05D005198 3.4e-24 116.7 171 35.1
Gohir.A06G202400 Gossypium hirsutum HOM05D004415 ORTHO05D005198 3.4e-24 116.7 270 28.1
arahy.Tifrunner.gnm1.ann1.QWIY8B Arachis hypogaea HOM05D004415 ORTHO05D005198 4.4e-24 116.3 171 33.3
Cc09_g04060 Coffea canephora HOM05D004415 ORTHO05D005198 4.4e-24 116.3 171 34.5
EL10Ac9g22486 Beta vulgaris HOM05D004415 ORTHO05D005198 7.5e-24 115.5 270 27.4
CDE06G2804 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 7.5e-24 115.5 262 27.9
Dinv03287 Davidia involucrata HOM05D004415 ORTHO05D005198 7.5e-24 115.5 275 28.7
Peaxi162Scf00195g00616 Petunia axillaris HOM05D004415 ORTHO05D005198 7.5e-24 115.5 270 27.4
PGSC0003DMG400021134 Solanum tuberosum HOM05D004415 ORTHO05D005198 7.5e-24 115.5 270 28.1
Medtr8g089250 Medicago truncatula HOM05D004415 ORTHO05D005198 9.8e-24 115.2 270 26.7
SMO228G0081 Selaginella moellendorffii HOM05D004415 ORTHO05D005198 9.8e-24 115.2 264 27.3
ATR1098G142 Amborella trichopoda HOM05D004415 ORTHO05D005198 1.7e-23 114.4 271 27.7
Lj6g0004921 Lotus japonicus HOM05D004415 ORTHO05D005198 1.7e-23 114.4 169 33.7
Ca_17811_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 2.2e-23 114.0 266 27.1
Gorai.009G116300 Gossypium raimondii HOM05D004415 ORTHO05D005198 2.9e-23 113.6 267 28.1
PGR083G0443 Punica granatum HOM05D004415 ORTHO05D005198 2.9e-23 113.6 267 27.0
Cfa000755 Carpinus fangiana HOM05D004415 ORTHO05D005198 3.7e-23 113.2 270 27.4
FvH4_3g11520 Fragaria vesca HOM05D004415 ORTHO05D005198 3.7e-23 113.2 270 28.5
CBR_g48904 Chara braunii HOM05D004415 ORTHO05D005198 4.9e-23 112.8 172 33.7
PSO541G2694 Papaver somniferum HOM05D004415 ORTHO05D005198 6.4e-23 112.5 171 32.7
THA.LOC104812930 Tarenaya hassleriana HOM05D004415 ORTHO05D005198 1.1e-22 111.7 262 25.2
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 1.4e-22 111.3 163 33.7
Thhalv10025893m.g Eutrema salsugineum HOM05D004415 ORTHO05D005198 1.4e-22 111.3 273 26.4
Prupe.4G102500 Prunus persica HOM05D004415 ORTHO05D005198 1.4e-22 111.3 270 28.5
RcHm_v2.0_Chr5g0018471 Rosa chinensis HOM05D004415 ORTHO05D005198 1.4e-22 111.3 270 27.8
AagrBONN_evm.TU.Sc2ySwM_368.1346 Anthoceros agrestis HOM05D004415 ORTHO05D005198 1.9e-22 110.9 270 27.8
Pp3c19_23300 Physcomitrium patens HOM05D004415 ORTHO05D005198 1.9e-22 110.9 270 27.4
TAR627G0414 Trochodendron aralioides HOM05D004415 ORTHO05D005198 2.4e-22 110.5 270 26.7
TAR627G1150 Trochodendron aralioides HOM05D004415 ORTHO05D005198 2.4e-22 110.5 270 26.7
Carub.0007s2075 Capsella rubella HOM05D004415 ORTHO05D005198 3.2e-22 110.2 273 26.0
Lsat_1_v5_gn_7_31101 Lactuca sativa HOM05D004415 ORTHO05D005198 3.2e-22 110.2 171 33.3
PSO675G6508 Papaver somniferum HOM05D004415 ORTHO05D005198 3.2e-22 110.2 171 31.6
AL7G33480 Arabidopsis lyrata HOM05D004415 ORTHO05D005198 4.1e-22 109.8 273 26.0
AT4G20410 Arabidopsis thaliana HOM05D004415 ORTHO05D005198 4.1e-22 109.8 273 26.0
Lalb_Chr07g0185681 Lupinus albus HOM05D004415 ORTHO05D005198 4.1e-22 109.8 171 33.3
HanXRQChr04g0119541 Helianthus annuus HOM05D004415 ORTHO05D005198 9.2e-22 108.6 171 32.7
Nn7g37839 Nelumbo nucifera HOM05D004415 ORTHO05D005198 9.2e-22 108.6 270 25.9
Aqoxy4G00050 Aquilegia oxysepala HOM05D004415 ORTHO05D005198 1.2e-21 108.2 267 27.3
CARHR227240 Cardamine hirsuta HOM05D004415 ORTHO05D005198 1.2e-21 108.2 273 25.6
Atru.chr10.660 Acer truncatum HOM05D004415 ORTHO05D005198 2.7e-21 107.1 267 25.5
Nitab4.5_0007613g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 3.5e-21 106.7 276 27.5
FAN25G0769 Fragaria x ananassa HOM05D004415 ORTHO05D005198 7.8e-21 105.5 288 27.1
Nitab4.5_0010415g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 7.8e-21 105.5 270 27.4
Sp7g18770 Schrenkiella parvula HOM05D004415 ORTHO05D005198 7.8e-21 105.5 273 25.3
Gohir.D06G219300 Gossypium hirsutum HOM05D004415 ORTHO05D005198 1.0e-20 105.1 246 27.6
A01p12100 Brassica napus HOM05D004415 ORTHO05D005198 1.3e-20 104.8 273 24.5
C01p14410 Brassica napus HOM05D004415 ORTHO05D005198 1.3e-20 104.8 273 24.5
BolC1t01398H Brassica oleracea HOM05D004415 ORTHO05D005198 1.3e-20 104.8 273 24.5
Aa31LG6G2800 Aethionema arabicum HOM05D004415 ORTHO05D005198 2.3e-20 104.0 273 25.6
PRCOL_00005341 Prasinoderma coloniale HOM05D004415 ORTHO05D005198 2.3e-20 104.0 181 34.3
FAN21G2450 Fragaria x ananassa HOM05D004415 ORTHO05D005198 3.9e-20 103.2 288 26.7
QL05p063115 Quercus lobata HOM05D004415 ORTHO05D005198 3.9e-20 103.2 315 25.4
ECA236G1935 Erigeron canadensis HOM05D004415 ORTHO05D005198 8.6e-20 102.1 270 25.6
BraA01t01153Z Brassica rapa HOM05D004415 ORTHO05D005198 1.9e-19 100.9 273 24.2
FAN16G2189 Fragaria x ananassa HOM05D004415 ORTHO05D005198 1.9e-19 100.9 288 26.4
Zm00001eb410240 Zea mays HOM05D004415 ORTHO05D005198 5.6e-19 99.4 165 35.8
Gohir.D05G112100 Gossypium hirsutum HOM05D004415 ORTHO05D005198 2.8e-18 97.1 196 30.6
Hma1.2p1_0008F-2.1_g005800 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 6.2e-18 95.9 214 29.9
Zm00001eb431060 Zea mays HOM05D004415 ORTHO05D005198 1.4e-17 94.7 219 27.4
arahy.Tifrunner.gnm1.ann1.6K3MVX Arachis hypogaea HOM05D004415 ORTHO05D005198 6.8e-17 92.4 151 31.8
Duzib043G0003 Durio zibethinus HOM05D004415 ORTHO05D005198 3.4e-16 90.1 151 33.1
CDE03G0221 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 4.9e-15 86.3 185 31.4
Zm00001eb072080 Zea mays HOM05D004415 ORTHO05D005198 8.4e-15 85.5 140 32.1
arahy.Tifrunner.gnm1.ann1.W2C20P Arachis hypogaea HOM05D004415 ORTHO05D005198 1.3e-12 78.2 121 32.2
Gohir.A05G111501 Gossypium hirsutum HOM05D004415 ORTHO05D005198 1.9e-11 74.3 155 28.4
Haze_05963 Corylus avellana HOM05D004415 ORTHO05D005198 5.2e-09 66.2 270 22.2
Zm00001eb266710 Zea mays HOM05D004415 ORTHO05D005198 1.2e-08 65.1 141 28.4
SEGI_29507 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 2.0e-08 64.3 164 28.0
TAR627G0753 Trochodendron aralioides HOM05D004415 ORTHO05D005198 2.2e-07 60.8 106 30.2
SEGI_22365 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 3.8e-07 60.1 81 30.9
MBI02_g43828_MAGBIO Magnolia biondii HOM05D004415 ORTHO05D005198 7.1e-06 55.8 143 25.2


User provided reference genes

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