Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre08.g380400 Chlamydomonas reinhardtii HOM05D004675 ORTHO05D005631 2.6e-110 402.1 209 100.0
CBR_g22979 Chara braunii HOM05D004675 ORTHO05D005631 2.2e-53 213.0 198 55.1
PRCOL_00002054 Prasinoderma coloniale HOM05D004675 ORTHO05D005631 3.5e-51 205.7 204 52.5
MCO12G028 Micromonas commoda HOM05D004675 ORTHO05D005631 4.3e-49 198.7 203 51.2
SMO201G0213 Selaginella moellendorffii HOM05D004675 ORTHO05D005631 5.6e-49 198.4 201 48.3
Aqoxy5G03546 Aquilegia oxysepala HOM05D004675 ORTHO05D005631 9.5e-49 197.6 196 49.0
HPP92_024295 Vanilla planifolia HOM05D004675 ORTHO05D005631 1.6e-48 196.8 196 48.0
HPP92_024302 Vanilla planifolia HOM05D004675 ORTHO05D005631 1.6e-48 196.8 196 48.0
AagrBONN_evm.TU.Sc2ySwM_228.148 Anthoceros agrestis HOM05D004675 ORTHO05D005631 1.4e-47 193.7 196 49.5
SEGI_13539 Sequoiadendron giganteum HOM05D004675 ORTHO05D005631 1.4e-47 193.7 206 45.6
DCAR_007019 Daucus carota HOM05D004675 ORTHO05D005631 1.8e-47 193.4 196 47.4
Mapoly0038s0109 Marchantia polymorpha HOM05D004675 ORTHO05D005631 1.8e-47 193.4 196 49.5
ATR0686G191 Amborella trichopoda HOM05D004675 ORTHO05D005631 8.9e-47 191.0 196 48.5
MBI11_g02883_MAGBIO Magnolia biondii HOM05D004675 ORTHO05D005631 8.9e-47 191.0 198 47.0
Medtr3g085940 Medicago truncatula HOM05D004675 ORTHO05D005631 8.9e-47 191.0 196 46.4
Duzib248G1503 Durio zibethinus HOM05D004675 ORTHO05D005631 1.2e-46 190.7 196 47.4
MD13G1109700 Malus domestica HOM05D004675 ORTHO05D005631 1.5e-46 190.3 196 47.4
RcHm_v2.0_Chr4g0431671 Rosa chinensis HOM05D004675 ORTHO05D005631 1.5e-46 190.3 196 46.9
CDE02G3169 Ceratophyllum demersum HOM05D004675 ORTHO05D005631 2.0e-46 189.9 196 46.9
FvH4_4g24620 Fragaria vesca HOM05D004675 ORTHO05D005631 2.0e-46 189.9 196 47.4
PSO782G3312 Papaver somniferum HOM05D004675 ORTHO05D005631 2.0e-46 189.9 196 46.4
MD16G1109600 Malus domestica HOM05D004675 ORTHO05D005631 2.6e-46 189.5 196 46.9
Pp3c4_13910 Physcomitrium patens HOM05D004675 ORTHO05D005631 2.6e-46 189.5 202 47.5
PSO063G1359 Papaver somniferum HOM05D004675 ORTHO05D005631 3.4e-46 189.1 196 46.4
Psat5g093080 Pisum sativum HOM05D004675 ORTHO05D005631 3.4e-46 189.1 196 46.4
TAR629G1273 Trochodendron aralioides HOM05D004675 ORTHO05D005631 4.4e-46 188.7 198 46.5
Dinv18164 Davidia involucrata HOM05D004675 ORTHO05D005631 5.8e-46 188.3 196 46.4
Prupe.1G235300 Prunus persica HOM05D004675 ORTHO05D005631 5.8e-46 188.3 196 45.9
Cpa.g.c35504 Carica papaya HOM05D004675 ORTHO05D005631 7.6e-46 188.0 196 46.4
Glyma.18G009900 Glycine max HOM05D004675 ORTHO05D005631 7.6e-46 188.0 196 46.9
Os04g0486500 Oryza sativa ssp. japonica HOM05D004675 ORTHO05D005631 7.6e-46 188.0 196 45.4
THA.LOC104805258 Tarenaya hassleriana HOM05D004675 ORTHO05D005631 7.6e-46 188.0 196 46.9
CSS0008983 Camellia sinensis var. sinensis HOM05D004675 ORTHO05D005631 9.9e-46 187.6 196 46.4
Phvul.001G258800 Phaseolus vulgaris HOM05D004675 ORTHO05D005631 9.9e-46 187.6 196 46.9
Prupe.1G235600 Prunus persica HOM05D004675 ORTHO05D005631 9.9e-46 187.6 196 45.9
Sabra08G0137200 Salix brachista HOM05D004675 ORTHO05D005631 9.9e-46 187.6 196 45.9
SalBow8G5054 Salvia bowleyana HOM05D004675 ORTHO05D005631 1.3e-45 187.2 196 45.9
Atru.chr11.2230 Acer truncatum HOM05D004675 ORTHO05D005631 1.7e-45 186.8 196 46.4
MSTRG.7971 Avicennia marina HOM05D004675 ORTHO05D005631 1.7e-45 186.8 196 46.4
CiPaw.06G062900 Carya illinoinensis HOM05D004675 ORTHO05D005631 1.7e-45 186.8 196 45.9
Cc11_g16480 Coffea canephora HOM05D004675 ORTHO05D005631 1.7e-45 186.8 196 46.4
COL.COLO4_23607 Corchorus olitorius HOM05D004675 ORTHO05D005631 1.7e-45 186.8 196 45.9
Duzib251G0102 Durio zibethinus HOM05D004675 ORTHO05D005631 1.7e-45 186.8 196 45.9
VMungo1383G2932 Vigna mungo HOM05D004675 ORTHO05D005631 1.7e-45 186.8 196 46.4
A09p25100 Brassica napus HOM05D004675 ORTHO05D005631 2.2e-45 186.4 204 46.1
BraA09t38098Z Brassica rapa HOM05D004675 ORTHO05D005631 2.2e-45 186.4 204 46.1
Gohir.A03G129700 Gossypium hirsutum HOM05D004675 ORTHO05D005631 2.2e-45 186.4 196 45.9
Manes.13G014900 Manihot esculenta HOM05D004675 ORTHO05D005631 2.2e-45 186.4 196 45.9
Nn3g16555 Nelumbo nucifera HOM05D004675 ORTHO05D005631 2.2e-45 186.4 198 46.0
Thecc.02G273100 Theobroma cacao HOM05D004675 ORTHO05D005631 2.2e-45 186.4 196 45.9
Lsat_1_v5_gn_3_29441 Lactuca sativa HOM05D004675 ORTHO05D005631 2.9e-45 186.0 196 46.9
Lj6g0000646 Lotus japonicus HOM05D004675 ORTHO05D005631 2.9e-45 186.0 196 45.9
Manes.12G015800 Manihot esculenta HOM05D004675 ORTHO05D005631 2.9e-45 186.0 196 46.4
Actinidia30679 Actinidia chinensis HOM05D004675 ORTHO05D005631 3.8e-45 185.7 196 45.4
BcaB07g30625 Brassica carinata HOM05D004675 ORTHO05D005631 3.8e-45 185.7 204 46.1
Ciclev10032763m.g Citrus clementina HOM05D004675 ORTHO05D005631 3.8e-45 185.7 196 45.9
Duzib268G1570 Durio zibethinus HOM05D004675 ORTHO05D005631 3.8e-45 185.7 196 45.9
Lalb_Chr08g0230731 Lupinus albus HOM05D004675 ORTHO05D005631 3.8e-45 185.7 196 46.4
Potri.008G179600 Populus trichocarpa HOM05D004675 ORTHO05D005631 3.8e-45 185.7 196 45.9
PGR102G1366 Punica granatum HOM05D004675 ORTHO05D005631 3.8e-45 185.7 196 45.9
arahy.Tifrunner.gnm1.ann1.06P6RC Arachis hypogaea HOM05D004675 ORTHO05D005631 4.9e-45 185.3 196 45.9
arahy.Tifrunner.gnm1.ann1.J0N2EL Arachis hypogaea HOM05D004675 ORTHO05D005631 4.9e-45 185.3 196 45.9
Gohir.D01G154000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 4.9e-45 185.3 196 45.4
Gohir.D02G155000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 4.9e-45 185.3 196 45.9
Gorai.005G172500 Gossypium raimondii HOM05D004675 ORTHO05D005631 4.9e-45 185.3 196 45.9
HanXRQChr06g0174811 Helianthus annuus HOM05D004675 ORTHO05D005631 4.9e-45 185.3 196 46.4
unitig_8.g3141 Utricularia gibba HOM05D004675 ORTHO05D005631 4.9e-45 185.3 197 44.7
Haze_12338 Corylus avellana HOM05D004675 ORTHO05D005631 6.4e-45 184.9 196 45.4
Thhalv10004915m.g Eutrema salsugineum HOM05D004675 ORTHO05D005631 6.4e-45 184.9 204 46.1
PGSC0003DMG400017457 Solanum tuberosum HOM05D004675 ORTHO05D005631 6.4e-45 184.9 198 44.9
SGA_v2.0_scaffold1G00563 Striga asiatica HOM05D004675 ORTHO05D005631 6.4e-45 184.9 196 45.4
TWI18G0072 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 6.4e-45 184.9 196 45.9
GSVIVG01010325001 Vitis vinifera HOM05D004675 ORTHO05D005631 6.4e-45 184.9 196 45.4
MSTRG.527 Avicennia marina HOM05D004675 ORTHO05D005631 8.4e-45 184.5 196 45.9
CAN.G227.11 Capsicum annuum HOM05D004675 ORTHO05D005631 8.4e-45 184.5 196 45.4
Potri.010G055100 Populus trichocarpa HOM05D004675 ORTHO05D005631 8.4e-45 184.5 196 45.9
BcaC04g21407 Brassica carinata HOM05D004675 ORTHO05D005631 1.1e-44 184.1 204 45.6
C09p32160 Brassica napus HOM05D004675 ORTHO05D005631 1.1e-44 184.1 204 45.6
BolC9t56064H Brassica oleracea HOM05D004675 ORTHO05D005631 1.1e-44 184.1 204 45.6
Migut.K00688 Erythranthe guttata HOM05D004675 ORTHO05D005631 1.1e-44 184.1 196 45.9
Solyc05g014370.3 Solanum lycopersicum HOM05D004675 ORTHO05D005631 1.1e-44 184.1 196 45.4
Sopen05g009500 Solanum pennellii HOM05D004675 ORTHO05D005631 1.1e-44 184.1 196 45.4
Hund02761 Selenicereus undatus HOM05D004675 ORTHO05D005631 1.4e-44 183.7 198 44.9
HanXRQChr17g0540031 Helianthus annuus HOM05D004675 ORTHO05D005631 1.9e-44 183.3 196 45.9
Oeu038665.1 Olea europaea HOM05D004675 ORTHO05D005631 1.9e-44 183.3 196 45.4
Sp2g15200 Schrenkiella parvula HOM05D004675 ORTHO05D005631 1.9e-44 183.3 204 46.1
Carub.0005s0383 Capsella rubella HOM05D004675 ORTHO05D005631 2.4e-44 183.0 204 45.6
Gohir.A01G156300 Gossypium hirsutum HOM05D004675 ORTHO05D005631 2.4e-44 183.0 196 44.9
Oeu041690.1 Olea europaea HOM05D004675 ORTHO05D005631 2.4e-44 183.0 200 46.0
Hma1.2p1_0079F.1_g041690 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 3.2e-44 182.6 196 45.9
AL5G14640 Arabidopsis lyrata HOM05D004675 ORTHO05D005631 4.2e-44 182.2 204 45.6
CANSAT01G3139 Cannabis sativa HOM05D004675 ORTHO05D005631 4.2e-44 182.2 196 44.9
Gorai.002G190700 Gossypium raimondii HOM05D004675 ORTHO05D005631 4.2e-44 182.2 196 44.4
SalBow2G2451 Salvia bowleyana HOM05D004675 ORTHO05D005631 4.2e-44 182.2 196 44.9
MELO3C011895.2 Cucumis melo HOM05D004675 ORTHO05D005631 7.1e-44 181.4 196 44.4
ClCG05G026270 Citrullus lanatus HOM05D004675 ORTHO05D005631 9.2e-44 181.0 196 44.4
CsaV3_5G030550 Cucumis sativus L. HOM05D004675 ORTHO05D005631 9.2e-44 181.0 196 44.4
Aa31LG2G6360 Aethionema arabicum HOM05D004675 ORTHO05D005631 1.2e-43 180.6 196 44.4
vmacro01089 Vaccinium macrocarpon HOM05D004675 ORTHO05D005631 1.6e-43 180.3 206 44.7
Dinv11000 Davidia involucrata HOM05D004675 ORTHO05D005631 2.1e-43 179.9 189 46.6
TWI75G1255 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 6.0e-43 178.3 201 44.8
Sed0023640 Sechium edule HOM05D004675 ORTHO05D005631 1.0e-42 177.6 193 44.6
QL03p055286 Quercus lobata HOM05D004675 ORTHO05D005631 1.5e-41 173.7 196 43.9
Zm00001eb425240 Zea mays HOM05D004675 ORTHO05D005631 1.9e-41 173.3 183 45.4
Rhsim12G0035500 Rhododendron simsii HOM05D004675 ORTHO05D005631 2.5e-41 172.9 196 45.4
FAN07G1447 Fragaria x ananassa HOM05D004675 ORTHO05D005631 3.3e-41 172.6 196 44.9
FAN12G3600 Fragaria x ananassa HOM05D004675 ORTHO05D005631 3.3e-41 172.6 196 44.9
FAN17G2208 Fragaria x ananassa HOM05D004675 ORTHO05D005631 3.3e-41 172.6 196 44.9
FAN22G1703 Fragaria x ananassa HOM05D004675 ORTHO05D005631 4.3e-41 172.2 196 44.9
AT3G25980 Arabidopsis thaliana HOM05D004675 ORTHO05D005631 5.6e-41 171.8 204 44.1
ECA246G2134 Erigeron canadensis HOM05D004675 ORTHO05D005631 2.8e-40 169.5 174 47.1
Peaxi162Scf00128g00833 Petunia axillaris HOM05D004675 ORTHO05D005631 3.6e-40 169.1 196 42.9
Sabra10G0049900 Salix brachista HOM05D004675 ORTHO05D005631 4.8e-40 168.7 196 43.9
Zm00001eb079190 Zea mays HOM05D004675 ORTHO05D005631 6.2e-40 168.3 196 43.9
QL11p019873 Quercus lobata HOM05D004675 ORTHO05D005631 4.0e-39 165.6 174 45.4
CARHR146960 Cardamine hirsuta HOM05D004675 ORTHO05D005631 2.6e-38 162.9 173 45.7
CiPaw.05G173000 Carya illinoinensis HOM05D004675 ORTHO05D005631 2.6e-38 162.9 173 45.1
QL11p019923 Quercus lobata HOM05D004675 ORTHO05D005631 2.6e-38 162.9 174 44.8
Ca_16490_v3 Cicer arietinum L. HOM05D004675 ORTHO05D005631 5.8e-38 161.8 174 43.7
AUR62024170 Chenopodium quinoa HOM05D004675 ORTHO05D005631 1.9e-36 156.8 196 40.3
Dinv18160 Davidia involucrata HOM05D004675 ORTHO05D005631 3.2e-36 156.0 196 44.4
Hund25435 Selenicereus undatus HOM05D004675 ORTHO05D005631 7.1e-36 154.8 198 40.9
AUR62005564 Chenopodium quinoa HOM05D004675 ORTHO05D005631 1.6e-35 153.7 196 40.3
Lsat_1_v5_gn_0_42421 Lactuca sativa HOM05D004675 ORTHO05D005631 2.3e-34 149.8 194 42.3
Sed0021695 Sechium edule HOM05D004675 ORTHO05D005631 1.5e-33 147.1 167 41.9
Haze_26713 Corylus avellana HOM05D000877 ORTHO05D005631 6.2e-32 141.7 188 41.5
Glyma.11G247400 Glycine max HOM05D004675 ORTHO05D005631 4.5e-30 135.6 149 44.3
Sc04g0009910 Simmondsia chinensis HOM05D004675 ORTHO05D005631 1.3e-29 134.0 149 43.0
EL10Ac6g13425 Beta vulgaris HOM05D004675 ORTHO05D005631 5.4e-28 128.6 196 36.2
Nitab4.5_0001898g0060 Nicotiana tabacum HOM05D004675 ORTHO05D005631 1.6e-24 117.1 198 35.4
Eucgr.B03457 Eucalyptus grandis HOM05D004675 ORTHO05D005631 1.8e-23 113.6 159 39.6
Nitab4.5_0000581g0180 Nicotiana tabacum HOM05D004675 ORTHO05D005631 1.5e-22 110.5 157 36.3
TPR.G22441 Trifolium pratense HOM05D004675 ORTHO05D005631 2.0e-22 110.2 124 44.4
Lsat_1_v5_gn_3_72261 Lactuca sativa HOM05D004675 ORTHO05D005631 3.4e-22 109.4 214 31.8
Actinidia08092 Actinidia chinensis HOM05D004675 ORTHO05D005631 7.6e-22 108.2 111 45.9
C07p35010 Brassica napus HOM05D004675 ORTHO05D005631 3.9e-18 95.9 145 37.2
HanXRQChr01g0005811 Helianthus annuus HOM05D004675 ORTHO05D005631 1.5e-17 94.0 112 43.8
HanXRQChr14g0462331 Helianthus annuus HOM05D004675 ORTHO05D005631 2.2e-13 80.1 99 42.4
Oeu060827.1 Olea europaea HOM05D004675 ORTHO05D005631 8.4e-13 78.2 162 31.5
Ah.03g133810 Amaranthus hybridus HOM05D004675 ORTHO05D005631 4.2e-12 75.9 197 26.4
HanXRQChr13g0416091 Helianthus annuus HOM05D004675 ORTHO05D005631 2.3e-10 70.1 107 37.4
Actinidia08091 Actinidia chinensis HOM05D004675 ORTHO05D005631 2.2e-08 63.5 64 43.8
Actinidia25751 Actinidia chinensis HOM05D004675 ORTHO05D005631 3.7e-08 62.8 76 39.5
Atru.chr9.690 Acer truncatum HOM05D004675 ORTHO05D005631 4.1e-07 59.3 133 29.3
Atru.chr2.951 Acer truncatum HOM05D004675 ORTHO05D005631 5.3e-07 58.9 88 39.8
HanXRQChr11g0351801 Helianthus annuus HOM05D004675 ORTHO05D005631 1.5e-06 57.4 57 45.6
Oeu049161.1 Olea europaea HOM05D004675 ORTHO05D005631 1.5e-06 57.4 86 36.0
A06p42320 Brassica napus HOM05D004675 ORTHO05D005631 3.4e-06 56.2 67 41.8
CAN.G710.39 Capsicum annuum HOM05D006956 ORTHO05D008824 5.9e-06 55.5 173 20.2
Cre13.g575333 Chlamydomonas reinhardtii HOM05D006956 ORTHO05D008824 7.7e-06 55.1 155 25.2
BcaC06g33934 Brassica carinata HOM05D004675 ORTHO05D005631 1.0e-05 54.7 86 34.9


User provided reference genes

Program Settings