Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre08.g379050 Chlamydomonas reinhardtii HOM05D002505 ORTHO05D007115 7.8e-254 880.6 665 100.0
Os10g0520700 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D007115 5.8e-31 140.2 596 24.2
vmacro11517 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 1.3e-30 139.0 607 24.5
Nitab4.5_0005042g0030 Nicotiana tabacum HOM05D002505 ORTHO05D007115 1.1e-29 136.0 597 24.5
AUR62007033 Chenopodium quinoa HOM05D002505 ORTHO05D007115 1.9e-29 135.2 595 24.4
TPR.G36929 Trifolium pratense HOM05D002505 ORTHO05D007115 3.2e-29 134.4 590 24.4
ATR0757G152 Amborella trichopoda HOM05D002505 ORTHO05D007115 5.4e-29 133.7 324 30.9
AUR62019897 Chenopodium quinoa HOM05D002505 ORTHO05D007115 5.4e-29 133.7 595 24.2
Lj2A158G82 Lonicera japonica HOM05D002505 ORTHO05D007115 7.0e-29 133.3 342 29.8
HPP92_022335 Vanilla planifolia HOM05D002505 ORTHO05D007115 9.2e-29 132.9 331 37.5
VMungo1309G3079 Vigna mungo HOM05D002505 ORTHO05D007115 9.2e-29 132.9 594 24.7
Glyma.06G132900 Glycine max HOM05D002505 ORTHO05D007115 1.2e-28 132.5 594 24.1
Phvul.009G039500 Phaseolus vulgaris HOM05D002505 ORTHO05D007115 1.2e-28 132.5 594 24.6
GSVIVG01019628001 Vitis vinifera HOM05D002505 ORTHO05D007115 1.6e-28 132.1 603 24.5
Glyma.04G232000 Glycine max HOM05D002505 ORTHO05D007115 2.7e-28 131.3 594 24.1
FAN17G1638 Fragaria x ananassa HOM05D002505 ORTHO05D007115 3.5e-28 131.0 598 23.4
Lsat_1_v5_gn_6_9040 Lactuca sativa HOM05D002505 ORTHO05D007115 3.5e-28 131.0 597 22.6
Eucgr.D01694 Eucalyptus grandis HOM05D002505 ORTHO05D007115 6.0e-28 130.2 335 29.0
Medtr5g025880 Medicago truncatula HOM05D002505 ORTHO05D007115 6.0e-28 130.2 594 24.1
Sopen08g031180 Solanum pennellii HOM05D002505 ORTHO05D007115 6.0e-28 130.2 599 23.9
HPP92_022360 Vanilla planifolia HOM05D002505 ORTHO05D007115 6.0e-28 130.2 331 37.2
Haze_09143 Corylus avellana HOM05D002505 ORTHO05D007115 1.0e-27 129.4 597 23.8
FAN22G1998 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.0e-27 129.4 614 23.5
Medtr1g032200 Medicago truncatula HOM05D002505 ORTHO05D007115 1.0e-27 129.4 478 25.3
Solyc08g082960.3 Solanum lycopersicum HOM05D002505 ORTHO05D007115 1.0e-27 129.4 599 23.7
Cfa011943 Carpinus fangiana HOM05D002505 ORTHO05D007115 1.7e-27 128.6 597 23.6
Nitab4.5_0002728g0050 Nicotiana tabacum HOM05D002505 ORTHO05D007115 1.7e-27 128.6 597 24.1
Prupe.5G127300 Prunus persica HOM05D002505 ORTHO05D007115 1.7e-27 128.6 597 22.8
Zm00001eb021220 Zea mays HOM05D002505 ORTHO05D007115 1.7e-27 128.6 333 29.7
FAN07G1120 Fragaria x ananassa HOM05D002505 ORTHO05D007115 2.3e-27 128.3 598 23.4
SalBow6G5481 Salvia bowleyana HOM05D002505 ORTHO05D007115 3.0e-27 127.9 328 28.7
FvH4_4g16080 Fragaria vesca HOM05D002505 ORTHO05D007115 5.0e-27 127.1 614 23.0
FAN12G2820 Fragaria x ananassa HOM05D002505 ORTHO05D007115 5.0e-27 127.1 614 23.0
QL02p027659 Quercus lobata HOM05D002505 ORTHO05D007115 5.0e-27 127.1 598 23.2
Ca_12555_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 1.5e-26 125.6 598 24.2
Gohir.A12G238900 Gossypium hirsutum HOM05D002505 ORTHO05D007115 1.5e-26 125.6 335 29.3
MD06G1114600 Malus domestica HOM05D002505 ORTHO05D007115 1.9e-26 125.2 335 28.1
Potri.003G145100 Populus trichocarpa HOM05D002505 ORTHO05D007115 1.9e-26 125.2 335 28.4
HanXRQChr02g0047181 Helianthus annuus HOM05D002505 ORTHO05D007115 2.5e-26 124.8 335 27.2
Manes.02G004600 Manihot esculenta HOM05D002505 ORTHO05D007115 2.5e-26 124.8 599 23.9
Aqoxy5G02423 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 4.3e-26 124.0 478 25.1
Cc00_g23270 Coffea canephora HOM05D002505 ORTHO05D007115 4.3e-26 124.0 590 23.7
Oeu010746.1 Olea europaea HOM05D002505 ORTHO05D007115 4.3e-26 124.0 332 28.9
TWI60G0007 Tripterygium wilfordii HOM05D002505 ORTHO05D007115 4.3e-26 124.0 613 23.3
TAR375G0040 Trochodendron aralioides HOM05D002505 ORTHO05D007115 4.3e-26 124.0 331 29.6
Aa31LG1G18070 Aethionema arabicum HOM05D002505 ORTHO05D007115 7.3e-26 123.2 330 29.4
CANSAT21G2418 Cannabis sativa HOM05D002505 ORTHO05D007115 9.5e-26 122.9 591 22.7
MBI04_g06931_MAGBIO Magnolia biondii HOM05D002505 ORTHO05D007115 1.2e-25 122.5 590 24.1
LjContig00141g0018407 Lotus japonicus HOM05D002505 ORTHO05D007115 1.6e-25 122.1 336 28.9
Lalb_Chr17g0338531 Lupinus albus HOM05D002505 ORTHO05D007115 1.6e-25 122.1 478 25.7
Dinv11454 Davidia involucrata HOM05D002505 ORTHO05D007115 2.8e-25 121.3 341 29.3
Gorai.008G257100 Gossypium raimondii HOM05D002505 ORTHO05D007115 2.8e-25 121.3 335 28.7
COL.COLO4_10772 Corchorus olitorius HOM05D002505 ORTHO05D007115 3.6e-25 120.9 335 27.8
Gohir.D12G240000 Gossypium hirsutum HOM05D002505 ORTHO05D007115 4.7e-25 120.6 335 28.7
Aqoxy5G01632 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 6.2e-25 120.2 478 24.9
arahy.Tifrunner.gnm1.ann1.31YZJ9 Arachis hypogaea HOM05D002505 ORTHO05D007115 8.1e-25 119.8 594 23.2
Sed0001422 Sechium edule HOM05D002505 ORTHO05D007115 1.1e-24 119.4 332 28.6
SMO348G0019 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 1.1e-24 119.4 328 28.0
arahy.Tifrunner.gnm1.ann1.Y3P1ER Arachis hypogaea HOM05D002505 ORTHO05D007115 2.3e-24 118.2 340 27.9
SGA_v2.0_scaffold104G30125 Striga asiatica HOM05D002505 ORTHO05D007115 2.3e-24 118.2 331 26.3
THA.LOC104823623 Tarenaya hassleriana HOM05D002505 ORTHO05D007115 2.3e-24 118.2 335 27.5
A06p30440 Brassica napus HOM05D002505 ORTHO05D007115 3.1e-24 117.9 331 28.4
Pp3c16_17440 Physcomitrium patens HOM05D002505 ORTHO05D007115 3.1e-24 117.9 328 28.7
Thecc.03G223700 Theobroma cacao HOM05D002505 ORTHO05D007115 3.1e-24 117.9 343 28.6
Ca_12566_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 4.0e-24 117.5 590 23.9
CsaV3_5G036540 Cucumis sativus L. HOM05D002505 ORTHO05D007115 4.0e-24 117.5 338 29.3
Sp2g26890 Schrenkiella parvula HOM05D002505 ORTHO05D007115 4.0e-24 117.5 328 28.0
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 5.2e-24 117.1 328 29.0
Lalb_Chr10g0095811 Lupinus albus HOM05D002505 ORTHO05D007115 6.8e-24 116.7 336 28.9
SEGI_04382 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 6.8e-24 116.7 595 23.5
BraA06t25993Z Brassica rapa HOM05D002505 ORTHO05D007115 8.9e-24 116.3 331 28.1
CSS0047752 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D007115 1.2e-23 115.9 591 23.2
PSO017G1033 Papaver somniferum HOM05D002505 ORTHO05D007115 1.5e-23 115.5 474 24.3
BcaC01g02620 Brassica carinata HOM05D002505 ORTHO05D007115 2.6e-23 114.8 331 28.1
C03p62620 Brassica napus HOM05D002505 ORTHO05D007115 2.6e-23 114.8 331 28.4
BolC3t18519H Brassica oleracea HOM05D002505 ORTHO05D007115 2.6e-23 114.8 331 28.4
CiPaw.11G114300 Carya illinoinensis HOM05D002505 ORTHO05D007115 2.6e-23 114.8 603 22.4
CDE11G0043 Ceratophyllum demersum HOM05D002505 ORTHO05D007115 3.4e-23 114.4 479 25.1
Peaxi162Scf00074g00358 Petunia axillaris HOM05D002505 ORTHO05D007115 3.4e-23 114.4 586 22.9
unitig_22.g5105 Utricularia gibba HOM05D002505 ORTHO05D007115 4.4e-23 114.0 328 26.8
MSTRG.2011 Avicennia marina HOM05D002505 ORTHO05D007115 7.5e-23 113.2 328 27.1
Duzib205G1766 Durio zibethinus HOM05D002505 ORTHO05D007115 9.8e-23 112.8 335 27.8
Nn4g26685 Nelumbo nucifera HOM05D002505 ORTHO05D007115 1.3e-22 112.5 332 27.1
PSO384G5034 Papaver somniferum HOM05D002505 ORTHO05D007115 1.3e-22 112.5 328 27.7
RcHm_v2.0_Chr7g0186571 Rosa chinensis HOM05D002505 ORTHO05D007115 1.7e-22 112.1 598 22.7
CARHR277730 Cardamine hirsuta HOM05D002505 ORTHO05D007115 4.9e-22 110.5 328 27.4
Mapoly0049s0078 Marchantia polymorpha HOM05D002505 ORTHO05D007115 6.4e-22 110.2 328 26.8
Psat6g045400 Pisum sativum HOM05D002505 ORTHO05D007115 1.1e-21 109.4 332 28.3
ClCG05G020760 Citrullus lanatus HOM05D002505 ORTHO05D007115 1.4e-21 109.0 332 28.6
PSO339G4385 Papaver somniferum HOM05D002505 ORTHO05D007115 3.2e-21 107.8 328 26.5
DCAR_009648 Daucus carota HOM05D002505 ORTHO05D007115 4.1e-21 107.5 336 27.1
Migut.J00879 Erythranthe guttata HOM05D002505 ORTHO05D007115 4.1e-21 107.5 328 25.6
Cpa.g.sc175.6 Carica papaya HOM05D002505 ORTHO05D007115 7.1e-21 106.7 332 27.1
AT5G63830 Arabidopsis thaliana HOM05D002505 ORTHO05D007115 9.2e-21 106.3 331 28.4
MCO07G240 Micromonas commoda HOM05D002505 ORTHO05D007115 1.3e-19 102.4 478 25.9
Thhalv10004334m.g Eutrema salsugineum HOM05D002505 ORTHO05D007115 4.3e-18 97.4 328 29.0
Atru.chr5.482 Acer truncatum HOM05D002505 ORTHO05D007115 1.8e-16 92.0 81 49.4
Zm00001eb044440 Zea mays HOM05D002505 ORTHO05D007115 1.8e-16 92.0 102 47.1
Ciclev10020379m.g Citrus clementina HOM05D002505 ORTHO05D007115 2.3e-16 91.7 343 24.8
Sc22g0004760 Simmondsia chinensis HOM05D002505 ORTHO05D007115 5.2e-16 90.5 73 52.1
Rhsim10G0016900 Rhododendron simsii HOM05D000068 ORTHO05D004691 2.0e-15 88.6 103 43.7
EL10Ac5g12461 Beta vulgaris HOM05D002505 ORTHO05D007115 3.4e-15 87.8 299 26.4
Sabra01G0062100 Salix brachista HOM05D002505 ORTHO05D007115 3.7e-14 84.3 335 24.8
PGSC0003DMG400012246 Solanum tuberosum HOM05D002505 ORTHO05D007115 3.7e-14 84.3 410 23.7
SEGI_16855 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 8.4e-14 83.2 71 52.1
Actinidia22196 Actinidia chinensis HOM05D002505 ORTHO05D007115 1.4e-13 82.4 437 23.6
AL8G41060 Arabidopsis lyrata HOM05D002505 ORTHO05D007115 4.1e-13 80.9 328 24.4
Glyma.13G121900 Glycine max HOM05D002505 ORTHO05D007115 4.1e-13 80.9 437 23.6
Carub.0008s2460 Capsella rubella HOM05D002505 ORTHO05D007115 1.6e-12 79.0 328 24.7
AagrBONN_evm.TU.Sc2ySwM_368.1194 Anthoceros agrestis HOM05D002505 ORTHO05D007115 2.1e-12 78.6 169 33.1
CBR_g20449 Chara braunii HOM05D002505 ORTHO05D007115 3.0e-11 74.7 476 23.7
MELO3C012450.2 Cucumis melo HOM05D002505 ORTHO05D007115 1.1e-10 72.8 313 24.6
FAN08G0319 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.1e-10 72.8 160 32.5
CAN.G567.73 Capsicum annuum HOM05D002505 ORTHO05D007115 3.3e-10 71.2 176 29.5
Dinv25607 Davidia involucrata HOM05D002505 ORTHO05D007115 1.6e-09 68.9 148 31.8
PGR031G3103 Punica granatum HOM05D002505 ORTHO05D007115 2.1e-09 68.6 295 24.4
ECA240G2126 Erigeron canadensis HOM05D002505 ORTHO05D007115 3.6e-09 67.8 411 20.9
Sc22g0004750 Simmondsia chinensis HOM05D002505 ORTHO05D007115 1.4e-08 65.9 113 36.3
vmacro04587 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 6.8e-08 63.5 106 33.0
FvH4_5g11280 Fragaria vesca HOM05D002505 ORTHO05D007115 3.4e-07 61.2 137 30.7


User provided reference genes

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