Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre08.g378100 Chlamydomonas reinhardtii HOM05D006750 ORTHO05D008426 3.1e-84 315.1 159 100.0
MELO3C021769.2 Cucumis melo HOM05D006750 ORTHO05D008426 2.5e-17 92.8 138 39.1
VMungo1215G0360 Vigna mungo HOM05D006750 ORTHO05D008426 2.5e-17 92.8 142 37.3
Phvul.003G153500 Phaseolus vulgaris HOM05D006750 ORTHO05D008426 2.1e-16 89.7 146 36.3
TPR.G24866 Trifolium pratense HOM05D006750 ORTHO05D008426 3.6e-16 89.0 129 36.4
Glyma.02G206800 Glycine max HOM05D006750 ORTHO05D008426 4.8e-16 88.6 143 35.0
PGR142G2582 Punica granatum HOM05D006750 ORTHO05D008426 4.8e-16 88.6 137 35.8
Sp4g21740 Schrenkiella parvula HOM05D006750 ORTHO05D008426 8.1e-16 87.8 134 36.6
SalBow8G0594 Salvia bowleyana HOM05D006750 ORTHO05D008426 1.1e-15 87.4 130 40.0
SalBow8G2736 Salvia bowleyana HOM05D006750 ORTHO05D008426 1.1e-15 87.4 130 40.0
HPP92_004186 Vanilla planifolia HOM05D006750 ORTHO05D008426 1.4e-15 87.0 133 36.8
CsaV3_1G046580 Cucumis sativus L. HOM05D006750 ORTHO05D008426 1.8e-15 86.7 137 37.2
BcaB02g09122 Brassica carinata HOM05D006750 ORTHO05D008426 2.4e-15 86.3 134 35.8
SGA_v2.0_scaffold298G47680 Striga asiatica HOM05D006750 ORTHO05D008426 2.4e-15 86.3 131 35.9
Ca_21154_v3 Cicer arietinum L. HOM05D006750 ORTHO05D008426 3.1e-15 85.9 131 37.4
Lj4g0008374 Lotus japonicus HOM05D006750 ORTHO05D008426 3.1e-15 85.9 129 38.0
vmacro03507 Vaccinium macrocarpon HOM05D006750 ORTHO05D008426 3.1e-15 85.9 141 36.2
Atru.chr12.2220 Acer truncatum HOM05D006750 ORTHO05D008426 4.0e-15 85.5 134 38.1
Gohir.D05G369200 Gossypium hirsutum HOM05D006750 ORTHO05D008426 5.3e-15 85.1 134 35.8
Gorai.009G437900 Gossypium raimondii HOM05D006750 ORTHO05D008426 6.9e-15 84.7 134 35.8
C04p08300 Brassica napus HOM05D006750 ORTHO05D008426 2.0e-14 83.2 134 34.3
RhsimUnG0232200 Rhododendron simsii HOM05D006750 ORTHO05D008426 2.6e-14 82.8 135 34.8
BcaC02g12068 Brassica carinata HOM05D006750 ORTHO05D008426 3.4e-14 82.4 134 33.6
Thecc.06G140200 Theobroma cacao HOM05D006750 ORTHO05D008426 3.4e-14 82.4 134 35.1
BcaC02g11618 Brassica carinata HOM05D006750 ORTHO05D008426 4.4e-14 82.0 134 33.6
C04p13120 Brassica napus HOM05D006750 ORTHO05D008426 4.4e-14 82.0 134 33.6
BraA05t19661Z Brassica rapa HOM05D006750 ORTHO05D008426 4.4e-14 82.0 134 33.6
FAN25G1681 Fragaria x ananassa HOM05D006750 ORTHO05D008426 4.4e-14 82.0 137 35.0
Gohir.A04G017000 Gossypium hirsutum HOM05D006750 ORTHO05D008426 4.4e-14 82.0 134 34.3
BolC4t22432H Brassica oleracea HOM05D006750 ORTHO05D008426 5.8e-14 81.6 134 33.6
Duzib235G0570 Durio zibethinus HOM05D006750 ORTHO05D008426 5.8e-14 81.6 126 36.5
FvH4_3g12150 Fragaria vesca HOM05D006750 ORTHO05D008426 5.8e-14 81.6 137 35.0
FAN16G3293 Fragaria x ananassa HOM05D006750 ORTHO05D008426 5.8e-14 81.6 137 35.0
HanXRQChr07g0189661 Helianthus annuus HOM05D006750 ORTHO05D008426 5.8e-14 81.6 144 38.2
unitig_748.g7497 Utricularia gibba HOM05D006750 ORTHO05D008426 5.8e-14 81.6 135 34.8
Cc09_g06280 Coffea canephora HOM05D006750 ORTHO05D008426 7.6e-14 81.3 130 36.9
Thhalv10017350m.g Eutrema salsugineum HOM05D006750 ORTHO05D008426 9.9e-14 80.9 134 35.1
CiPaw.10G065100 Carya illinoinensis HOM05D006750 ORTHO05D008426 1.7e-13 80.1 131 34.4
ClCG01G009300 Citrullus lanatus HOM05D006750 ORTHO05D008426 1.7e-13 80.1 128 34.4
A05p06970 Brassica napus HOM05D006750 ORTHO05D008426 2.2e-13 79.7 134 33.6
CBR_g39953 Chara braunii HOM05D006750 ORTHO05D008426 2.2e-13 79.7 187 30.5
Thecc.06G141200 Theobroma cacao HOM05D006750 ORTHO05D008426 2.2e-13 79.7 134 34.3
Os02g0168900 Oryza sativa ssp. japonica HOM05D006750 ORTHO05D008426 2.9e-13 79.3 147 33.3
ECA246G4127 Erigeron canadensis HOM05D006750 ORTHO05D008426 3.8e-13 79.0 129 36.4
Ciclev10016972m.g Citrus clementina HOM05D006750 ORTHO05D008426 4.9e-13 78.6 134 35.1
AT2G39440 Arabidopsis thaliana HOM05D006750 ORTHO05D008426 6.4e-13 78.2 137 33.6
COL.COLO4_30981 Corchorus olitorius HOM05D006750 ORTHO05D008426 8.4e-13 77.8 98 41.8
Sabra15G0136900 Salix brachista HOM05D006750 ORTHO05D008426 8.4e-13 77.8 129 34.9
DCAR_004323 Daucus carota HOM05D006750 ORTHO05D008426 2.4e-12 76.3 127 36.2
AUR62007362 Chenopodium quinoa HOM05D006750 ORTHO05D008426 3.2e-12 75.9 139 33.1
Lsat_1_v5_gn_5_36321 Lactuca sativa HOM05D006750 ORTHO05D008426 4.2e-12 75.5 134 36.6
TWI63G0081 Tripterygium wilfordii HOM05D006750 ORTHO05D008426 4.2e-12 75.5 133 31.6
AL4G36810 Arabidopsis lyrata HOM05D006750 ORTHO05D008426 5.4e-12 75.1 133 32.3
CSS0027015 Camellia sinensis var. sinensis HOM05D006750 ORTHO05D008426 7.1e-12 74.7 135 32.6
Sp4g08180 Schrenkiella parvula HOM05D006750 ORTHO05D008426 7.1e-12 74.7 140 32.9
CAN.G1222.19 Capsicum annuum HOM05D006750 ORTHO05D008426 9.3e-12 74.3 133 34.6
Aqoxy1G01469 Aquilegia oxysepala HOM05D006750 ORTHO05D008426 1.6e-11 73.6 130 33.8
Manes.11G104340 Manihot esculenta HOM05D006750 ORTHO05D008426 1.6e-11 73.6 131 32.1
Mapoly0007s0049 Marchantia polymorpha HOM05D006750 ORTHO05D008426 1.6e-11 73.6 137 35.0
Oeu052673.2 Olea europaea HOM05D006750 ORTHO05D008426 4.6e-11 72.0 125 36.0
TAR627G0115 Trochodendron aralioides HOM05D006750 ORTHO05D008426 4.6e-11 72.0 128 33.6
Pp3c2_9480 Physcomitrium patens HOM05D006750 ORTHO05D008426 6.0e-11 71.6 163 32.5
THA.LOC104824253 Tarenaya hassleriana HOM05D006750 ORTHO05D008426 6.0e-11 71.6 134 32.8
Haze_06026 Corylus avellana HOM05D006750 ORTHO05D008426 7.9e-11 71.2 130 32.3
Actinidia22388 Actinidia chinensis HOM05D006750 ORTHO05D008426 1.0e-10 70.9 101 36.6
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 1.0e-10 70.9 114 36.0
Dinv11873 Davidia involucrata HOM05D006750 ORTHO05D008426 1.0e-10 70.9 122 35.2
QL11p018076 Quercus lobata HOM05D006750 ORTHO05D008426 1.0e-10 70.9 132 29.5
Nitab4.5_0002056g0050 Nicotiana tabacum HOM05D006750 ORTHO05D008426 1.3e-10 70.5 150 32.0
Potri.012G120220 Populus trichocarpa HOM05D006750 ORTHO05D008426 1.7e-10 70.1 131 31.3
arahy.Tifrunner.gnm1.ann1.8322W6 Arachis hypogaea HOM05D006750 ORTHO05D008426 2.3e-10 69.7 142 32.4
arahy.Tifrunner.gnm1.ann1.RPZE8L Arachis hypogaea HOM05D006750 ORTHO05D008426 2.3e-10 69.7 142 32.4
Nitab4.5_0003773g0080 Nicotiana tabacum HOM05D006750 ORTHO05D008426 2.3e-10 69.7 133 33.1
Prupe.4G110300 Prunus persica HOM05D006750 ORTHO05D008426 2.3e-10 69.7 130 30.0
Solyc02g069070.3 Solanum lycopersicum HOM05D006750 ORTHO05D008426 2.3e-10 69.7 133 32.3
ATR0763G132 Amborella trichopoda HOM05D006750 ORTHO05D008426 3.0e-10 69.3 109 36.7
Lj1A1143T38 Lonicera japonica HOM05D006750 ORTHO05D008426 3.0e-10 69.3 125 32.8
AagrBONN_evm.TU.Sc2ySwM_344.3424 Anthoceros agrestis HOM05D006750 ORTHO05D008426 5.1e-10 68.6 111 38.7
GSVIVG01012094001 Vitis vinifera HOM05D006750 ORTHO05D008426 5.1e-10 68.6 153 30.1
CSS0019703 Camellia sinensis var. sinensis HOM05D006750 ORTHO05D008426 8.7e-10 67.8 125 32.8
EL10Ac2g02809 Beta vulgaris HOM05D006750 ORTHO05D008426 1.1e-09 67.4 138 32.6
Cfa000723 Carpinus fangiana HOM05D006750 ORTHO05D008426 1.5e-09 67.0 98 34.7
Hma1.2p1_0040F.1_g025070 Hydrangea macrophylla HOM05D006750 ORTHO05D008426 2.5e-09 66.2 126 31.7
CANSAT21G0613 Cannabis sativa HOM05D006750 ORTHO05D008426 3.3e-09 65.9 134 32.8
Ah.12g055560 Amaranthus hybridus HOM05D002269 ORTHO05D002421 2.4e-07 59.7 191 30.9
Hma1.2p1_0040F.1_g025080 Hydrangea macrophylla HOM05D006750 ORTHO05D008426 5.3e-07 58.5 84 35.7
Sc05g0005750 Simmondsia chinensis HOM05D006750 ORTHO05D008426 5.8e-06 55.1 122 31.1


User provided reference genes

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