Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre08.g375250 Chlamydomonas reinhardtii HOM05D000540 ORTHO05D009557 6.5e-63 243.8 117 100.0
Haze_26884 Corylus avellana HOM05D000540 ORTHO05D000681 5.2e-12 74.7 105 40.0
Mapoly0157s0025 Marchantia polymorpha HOM05D000540 ORTHO05D008105 9.9e-11 70.5 110 37.3
Gohir.A12G089750 Gossypium hirsutum HOM05D000540 ORTHO05D009557 3.7e-10 68.6 90 40.0
PGR111G0101 Punica granatum HOM05D000540 ORTHO05D009557 4.9e-10 68.2 90 40.0
Lalb_Chr25g0283401 Lupinus albus HOM05D000540 ORTHO05D009557 1.9e-09 66.2 90 40.0
Medtr3g035720 Medicago truncatula HOM05D000540 ORTHO05D009557 1.9e-09 66.2 90 40.0
Medtr4g051420 Medicago truncatula HOM05D000540 ORTHO05D009557 1.9e-09 66.2 90 40.0
PSO548G0068 Papaver somniferum HOM05D000540 ORTHO05D009557 1.9e-09 66.2 90 41.1
ECA236G4531 Erigeron canadensis HOM05D000540 ORTHO05D009557 3.2e-09 65.5 65 47.7
Hma1.2p1_0192F.1_g083730 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 3.2e-09 65.5 88 39.8
Hma1.2p1_0247F.1_g101832 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 3.2e-09 65.5 88 39.8
Hma1.2p1_0298F.1_g117734 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 3.2e-09 65.5 88 39.8
Hma1.2p1_0818F.1_g223303 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 3.2e-09 65.5 88 39.8
DCAR_032526 Daucus carota HOM05D000540 ORTHO05D009557 4.1e-09 65.1 88 39.8
HanXRQChr10g0318011 Helianthus annuus HOM05D000540 ORTHO05D009557 4.1e-09 65.1 88 38.6
HanXRQChr15g0494391 Helianthus annuus HOM05D000540 ORTHO05D009557 4.1e-09 65.1 77 42.9
Lsat_1_v5_gn_0_41560 Lactuca sativa HOM05D000540 ORTHO05D000681 4.1e-09 65.1 88 38.6
CDE04G1374 Ceratophyllum demersum HOM05D000540 ORTHO05D009557 5.4e-09 64.7 70 41.4
Potri.011G074301 Populus trichocarpa HOM05D000540 ORTHO05D009557 5.4e-09 64.7 90 38.9
CARHR282280 Cardamine hirsuta HOM05D000540 ORTHO05D009557 7.1e-09 64.3 88 38.6
Potri.005G154674 Populus trichocarpa HOM05D000540 ORTHO05D009557 7.1e-09 64.3 90 38.9
Potri.013G137688 Populus trichocarpa HOM05D000540 ORTHO05D009557 7.1e-09 64.3 90 38.9
SMO086G0012 Selaginella moellendorffii HOM05D000540 ORTHO05D009557 7.1e-09 64.3 103 36.9
HanXRQChr11g0337241 Helianthus annuus HOM05D000540 ORTHO05D009557 1.2e-08 63.5 65 44.6
Oeu025653.1 Olea europaea HOM05D000218 ORTHO05D000125 1.2e-08 63.5 107 30.8
AagrBONN_evm.TU.Sc2ySwM_228.180 Anthoceros agrestis HOM05D000540 ORTHO05D008105 1.6e-08 63.2 99 35.4
arahy.Tifrunner.gnm1.ann1.YHR3P6 Arachis hypogaea HOM05D000540 ORTHO05D009557 1.6e-08 63.2 86 37.2
C03p38140 Brassica napus HOM05D000540 ORTHO05D009557 1.6e-08 63.2 88 37.5
BolSC35t60674H Brassica oleracea HOM05D000540 ORTHO05D009557 1.6e-08 63.2 88 37.5
BraSC59t46567Z Brassica rapa HOM05D000540 ORTHO05D009557 1.6e-08 63.2 88 37.5
CDE07G1014 Ceratophyllum demersum HOM05D000540 ORTHO05D009557 1.6e-08 63.2 70 40.0
Oeu011524.2 Olea europaea HOM05D000218 ORTHO05D000125 1.6e-08 63.2 104 33.7
SMO358G0711 Selaginella moellendorffii HOM05D000540 ORTHO05D008105 1.6e-08 63.2 116 37.9
AagrBONN_evm.TU.Sc2ySwM_117.3450 Anthoceros agrestis HOM05D000540 ORTHO05D008105 2.1e-08 62.8 99 35.4
PSO541G1563 Papaver somniferum HOM05D000540 ORTHO05D009557 2.1e-08 62.8 101 35.6
Lsat_1_v5_gn_5_185760 Lactuca sativa HOM05D000540 ORTHO05D009557 2.7e-08 62.4 69 42.0
Lsat_1_v5_gn_7_110000 Lactuca sativa HOM05D000540 ORTHO05D009557 4.6e-08 61.6 64 43.8
Peaxi162Scf00299g00117 Petunia axillaris HOM05D000540 ORTHO05D009557 4.6e-08 61.6 70 44.3
Gohir.D06G105033 Gossypium hirsutum HOM05D000540 ORTHO05D009557 6.0e-08 61.2 84 38.1
PSO675G4368 Papaver somniferum HOM05D000540 ORTHO05D009557 6.0e-08 61.2 66 40.9
SGA_v2.0_scaffold126G33916 Striga asiatica HOM05D000218 ORTHO05D000125 6.0e-08 61.2 111 30.6
Lsat_1_v5_gn_5_50501 Lactuca sativa HOM05D000540 ORTHO05D009557 7.8e-08 60.8 94 37.2
Nitab4.5_0001783g0160 Nicotiana tabacum HOM05D000540 ORTHO05D009557 1.0e-07 60.5 63 42.9
CARHR114570 Cardamine hirsuta HOM05D000540 ORTHO05D009557 1.3e-07 60.1 103 35.9
Oeu001341.1 Olea europaea HOM05D000218 ORTHO05D000125 1.3e-07 60.1 72 41.7
Aqoxy3G00098 Aquilegia oxysepala HOM05D000540 ORTHO05D009557 1.7e-07 59.7 66 47.0
MSTRG.19148 Avicennia marina HOM05D000218 ORTHO05D000125 1.7e-07 59.7 109 33.0
PSO675G7318 Papaver somniferum HOM05D000540 ORTHO05D009557 2.3e-07 59.3 65 43.1
unitig_699.g19584 Utricularia gibba HOM05D000218 ORTHO05D000125 2.3e-07 59.3 107 31.8
BolSC35t60725H Brassica oleracea HOM05D000540 ORTHO05D000681 3.0e-07 58.9 74 39.2
PSO349G0315 Papaver somniferum HOM05D000540 ORTHO05D009557 3.9e-07 58.5 65 44.6
BolC9t56905H Brassica oleracea HOM05D000540 ORTHO05D009557 5.1e-07 58.2 88 35.2
Mapoly0010s0113 Marchantia polymorpha HOM05D024141 ORTHO05D008105 5.1e-07 58.2 60 46.7
Pp3c3_35760 Physcomitrium patens HOM05D024141 ORTHO05D008105 5.1e-07 58.2 67 43.3
Ah.08g216160 Amaranthus hybridus HOM05D000540 ORTHO05D008105 6.6e-07 57.8 112 33.9
BcaC03g13258 Brassica carinata HOM05D000856 ORTHO05D001792 6.6e-07 57.8 82 37.8
C02p03890 Brassica napus HOM05D000856 ORTHO05D001792 6.6e-07 57.8 82 37.8
BolC2t06351H Brassica oleracea HOM05D000856 ORTHO05D001792 6.6e-07 57.8 82 37.8
Migut.J00430 Erythranthe guttata HOM05D000540 ORTHO05D009557 6.6e-07 57.8 65 46.2
THA.LOC104808595 Tarenaya hassleriana HOM05D000856 ORTHO05D001792 6.6e-07 57.8 61 42.6
AT5G09490 Arabidopsis thaliana HOM05D000856 ORTHO05D001792 8.6e-07 57.4 60 45.0
BcaB04g19944 Brassica carinata HOM05D000856 ORTHO05D001792 8.6e-07 57.4 94 31.9
C03p53300 Brassica napus HOM05D000540 ORTHO05D008105 8.6e-07 57.4 101 34.7
Carub.0008s2379 Capsella rubella HOM05D000856 ORTHO05D001792 8.6e-07 57.4 94 35.1
MELO3C011310.2 Cucumis melo HOM05D000540 ORTHO05D008105 8.6e-07 57.4 90 34.4
Lsat_1_v5_gn_3_22600 Lactuca sativa HOM05D000540 ORTHO05D000681 8.6e-07 57.4 49 49.0
Medtr7g106780 Medicago truncatula HOM05D000540 ORTHO05D008105 1.1e-06 57.0 93 39.8
C09p09120 Brassica napus HOM05D000856 ORTHO05D001792 1.5e-06 56.6 59 42.4
BolC9t53824H Brassica oleracea HOM05D000856 ORTHO05D001792 1.5e-06 56.6 59 42.4
CARHR276880 Cardamine hirsuta HOM05D000856 ORTHO05D001792 1.5e-06 56.6 59 42.4
CBR_g40516 Chara braunii HOM05D000856 ORTHO05D001792 1.5e-06 56.6 60 43.3
Gohir.A02G076002 Gossypium hirsutum HOM05D000540 ORTHO05D009557 1.5e-06 56.6 55 45.5
AagrBONN_evm.TU.Sc2ySwM_344.4683 Anthoceros agrestis HOM05D000856 ORTHO05D001792 1.9e-06 56.2 60 43.3
AT5G47320 Arabidopsis thaliana HOM05D000540 ORTHO05D008105 1.9e-06 56.2 101 34.7
C01p39820 Brassica napus HOM05D000540 ORTHO05D008105 1.9e-06 56.2 95 32.6
CsaV3_2G032570 Cucumis sativus L. HOM05D000540 ORTHO05D008105 1.9e-06 56.2 90 34.4
SMO137G0231 Selaginella moellendorffii HOM05D000856 ORTHO05D001792 1.9e-06 56.2 60 41.7
AL6G19890 Arabidopsis lyrata HOM05D000856 ORTHO05D001792 2.5e-06 55.8 60 43.3
BcaB05g21549 Brassica carinata HOM05D000856 ORTHO05D001792 2.5e-06 55.8 60 43.3
C09p40100 Brassica napus HOM05D000540 ORTHO05D000681 2.5e-06 55.8 74 37.8
Carub.0006s0806 Capsella rubella HOM05D000856 ORTHO05D001792 2.5e-06 55.8 60 43.3
CARHR203890 Cardamine hirsuta HOM05D000856 ORTHO05D001792 2.5e-06 55.8 60 43.3
Cre08.g360900 Chlamydomonas reinhardtii HOM05D000856 ORTHO05D001792 2.5e-06 55.8 80 36.2
Ca_09077_v3 Cicer arietinum L. HOM05D000540 ORTHO05D008105 2.5e-06 55.8 103 35.0
PRCOL_00007002 Prasinoderma coloniale HOM05D000856 ORTHO05D001792 2.5e-06 55.8 60 41.7
Hund07747 Selenicereus undatus HOM05D000540 ORTHO05D008105 2.5e-06 55.8 105 34.3
Hund29685 Selenicereus undatus HOM05D002578 ORTHO05D009557 2.5e-06 55.8 87 35.6
Hund30542 Selenicereus undatus HOM05D002578 ORTHO05D009557 2.5e-06 55.8 87 35.6
Hund31295 Selenicereus undatus HOM05D002578 ORTHO05D009557 2.5e-06 55.8 87 35.6
BcaB04g20419 Brassica carinata HOM05D000540 ORTHO05D008105 3.3e-06 55.5 95 32.6
BcaB06g26544 Brassica carinata HOM05D000540 ORTHO05D008105 3.3e-06 55.5 95 32.6
BcaC06g35575 Brassica carinata HOM05D000540 ORTHO05D008105 3.3e-06 55.5 95 32.6
A01p31250 Brassica napus HOM05D000540 ORTHO05D008105 3.3e-06 55.5 95 32.6
A03p43380 Brassica napus HOM05D000540 ORTHO05D008105 3.3e-06 55.5 95 32.6
A07p08550 Brassica napus HOM05D000540 ORTHO05D008105 3.3e-06 55.5 95 32.6
C07p13360 Brassica napus HOM05D000540 ORTHO05D008105 3.3e-06 55.5 95 32.6
BolC1t03932H Brassica oleracea HOM05D000540 ORTHO05D008105 3.3e-06 55.5 95 32.6
BolC7t41830H Brassica oleracea HOM05D000540 ORTHO05D008105 3.3e-06 55.5 95 32.6
BraA01t03249Z Brassica rapa HOM05D000540 ORTHO05D008105 3.3e-06 55.5 95 32.6
BraA03t13476Z Brassica rapa HOM05D000540 ORTHO05D008105 3.3e-06 55.5 95 32.6
BraA07t28644Z Brassica rapa HOM05D000540 ORTHO05D008105 3.3e-06 55.5 95 32.6
CANSAT16G0016 Cannabis sativa HOM05D000540 ORTHO05D008105 3.3e-06 55.5 89 34.8
Carub.0008s0045 Capsella rubella HOM05D000540 ORTHO05D008105 3.3e-06 55.5 98 32.7
DCAR_015262 Daucus carota HOM05D000540 ORTHO05D008105 3.3e-06 55.5 105 31.4
Thhalv10002665m.g Eutrema salsugineum HOM05D000540 ORTHO05D008105 3.3e-06 55.5 95 32.6
Lj2A1229G102 Lonicera japonica HOM05D000540 ORTHO05D000681 3.3e-06 55.5 89 34.8
MBI12_g23294_MAGBIO Magnolia biondii HOM05D000540 ORTHO05D009557 3.3e-06 55.5 108 34.3
Sp3g21530 Schrenkiella parvula HOM05D000540 ORTHO05D008105 3.3e-06 55.5 95 32.6
AL8G10730 Arabidopsis lyrata HOM05D000540 ORTHO05D008105 4.3e-06 55.1 99 34.3
AL8G40100 Arabidopsis lyrata HOM05D000856 ORTHO05D001792 4.3e-06 55.1 59 40.7
BcaC01g03363 Brassica carinata HOM05D000540 ORTHO05D008105 4.3e-06 55.1 95 32.6
BolC3t17591H Brassica oleracea HOM05D000540 ORTHO05D008105 4.3e-06 55.1 95 32.6
Mapoly0004s0172 Marchantia polymorpha HOM05D000856 ORTHO05D001792 4.3e-06 55.1 60 41.7
AT5G63070 Arabidopsis thaliana HOM05D000856 ORTHO05D001792 5.6e-06 54.7 56 42.9
A09p08050 Brassica napus HOM05D000856 ORTHO05D001792 5.6e-06 54.7 56 42.9
CiPaw.04G013600 Carya illinoinensis HOM05D002804 ORTHO05D003755 5.6e-06 54.7 89 32.6
Nitab4.5_0005420g0010 Nicotiana tabacum HOM05D000856 ORTHO05D001792 5.6e-06 54.7 56 41.1
Solyc00g500245.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 5.6e-06 54.7 89 33.7
Solyc00g500273.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 5.6e-06 54.7 89 33.7
PGSC0003DMG400021035 Solanum tuberosum HOM05D000540 ORTHO05D008105 5.6e-06 54.7 89 33.7
Aa31LG1G20610 Aethionema arabicum HOM05D000856 ORTHO05D001792 7.3e-06 54.3 60 43.3
Cfa009693 Carpinus fangiana HOM05D002804 ORTHO05D003755 7.3e-06 54.3 60 40.0
Pp3c27_7820 Physcomitrium patens HOM05D000856 ORTHO05D001792 7.3e-06 54.3 60 41.7
Sc06g0008940 Simmondsia chinensis HOM05D000540 ORTHO05D008105 7.3e-06 54.3 107 31.8
A02p00010 Brassica napus HOM05D000856 ORTHO05D001792 9.5e-06 53.9 60 41.7
CSS0001641 Camellia sinensis var. sinensis HOM05D000856 ORTHO05D001792 9.5e-06 53.9 60 40.0
Carub.0006s0807 Capsella rubella HOM05D000856 ORTHO05D001792 9.5e-06 53.9 60 41.7
CBR_g17958 Chara braunii HOM05D000856 ORTHO05D001792 9.5e-06 53.9 60 40.0
Ca_22805_v3 Cicer arietinum L. HOM05D000540 ORTHO05D008105 9.5e-06 53.9 93 34.4
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 9.5e-06 53.9 60 41.7
THA.LOC104808491 Tarenaya hassleriana HOM05D000856 ORTHO05D001792 9.5e-06 53.9 60 40.0
Thecc.01G265700 Theobroma cacao HOM05D000856 ORTHO05D001792 9.5e-06 53.9 60 40.0
TPR.G25660 Trifolium pratense HOM05D000540 ORTHO05D008105 9.5e-06 53.9 103 34.0
vmacro08410 Vaccinium macrocarpon HOM05D000856 ORTHO05D001792 9.5e-06 53.9 60 40.0
vmacro15407 Vaccinium macrocarpon HOM05D000856 ORTHO05D001792 9.5e-06 53.9 60 40.0


User provided reference genes

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