Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre08.g368450 Chlamydomonas reinhardtii HOM05D003718 ORTHO05D004402 5.0e-152 541.2 299 100.0
Pp3c7_6480 Physcomitrium patens HOM05D003718 ORTHO05D004402 1.3e-22 111.3 269 35.3
Duzib211G0290 Durio zibethinus HOM05D003718 ORTHO05D004402 1.1e-21 108.2 304 32.9
Duzib133G1085 Durio zibethinus HOM05D003718 ORTHO05D004402 2.4e-21 107.1 221 37.1
Gorai.001G179000 Gossypium raimondii HOM05D003718 ORTHO05D004402 5.4e-21 105.9 301 32.2
Gohir.D07G156100 Gossypium hirsutum HOM05D003718 ORTHO05D004402 7.1e-21 105.5 301 32.2
CANSAT01G0671 Cannabis sativa HOM05D003718 ORTHO05D004402 1.6e-20 104.4 304 34.5
GSVIVG01028357001 Vitis vinifera HOM05D003718 ORTHO05D004402 1.6e-20 104.4 304 33.9
SEGI_27157 Sequoiadendron giganteum HOM05D003718 ORTHO05D004402 2.1e-20 104.0 219 38.4
Thecc.01G255900 Theobroma cacao HOM05D003718 ORTHO05D004402 2.1e-20 104.0 304 31.6
Psat6g054080 Pisum sativum HOM05D003718 ORTHO05D004402 3.5e-20 103.2 220 39.1
Duzib138G1036 Durio zibethinus HOM05D003718 ORTHO05D004402 4.6e-20 102.8 300 33.3
Prupe.8G221600 Prunus persica HOM05D003718 ORTHO05D004402 1.3e-19 101.3 305 32.5
HanXRQChr04g0110491 Helianthus annuus HOM05D003718 ORTHO05D004402 1.7e-19 100.9 302 32.5
VMungo1383G2169 Vigna mungo HOM05D003718 ORTHO05D004402 1.7e-19 100.9 218 37.6
Medtr1g069780 Medicago truncatula HOM05D003718 ORTHO05D004402 3.0e-19 100.1 300 35.0
Aqoxy1G01842 Aquilegia oxysepala HOM05D003718 ORTHO05D004402 3.9e-19 99.8 300 33.7
Os01g0911200 Oryza sativa ssp. japonica HOM05D003718 ORTHO05D004402 3.9e-19 99.8 220 35.9
Lj5g0026512 Lotus japonicus HOM05D003718 ORTHO05D004402 6.6e-19 99.0 298 32.2
Nn1g02814 Nelumbo nucifera HOM05D003718 ORTHO05D004402 6.6e-19 99.0 303 33.0
TPR.G5874 Trifolium pratense HOM05D003718 ORTHO05D004402 6.6e-19 99.0 220 39.5
Gohir.A11G131600 Gossypium hirsutum HOM05D003718 ORTHO05D004402 1.1e-18 98.2 221 36.7
arahy.Tifrunner.gnm1.ann1.FU7SP6 Arachis hypogaea HOM05D003718 ORTHO05D004402 1.5e-18 97.8 220 37.7
AUR62013766 Chenopodium quinoa HOM05D003718 ORTHO05D004402 1.5e-18 97.8 221 36.7
AUR62043414 Chenopodium quinoa HOM05D003718 ORTHO05D004402 1.5e-18 97.8 221 36.7
Gohir.A07G149800 Gossypium hirsutum HOM05D003718 ORTHO05D004402 1.5e-18 97.8 301 31.2
QL09p039591 Quercus lobata HOM05D003718 ORTHO05D004402 1.5e-18 97.8 302 33.1
Ciclev10019124m.g Citrus clementina HOM05D003718 ORTHO05D004402 2.5e-18 97.1 306 31.7
Atru.chr5.1725 Acer truncatum HOM05D003718 ORTHO05D004402 4.3e-18 96.3 301 31.9
Gohir.D11G137575 Gossypium hirsutum HOM05D003718 ORTHO05D004402 4.3e-18 96.3 221 35.7
MD10G1181500 Malus domestica HOM05D003718 ORTHO05D004402 4.3e-18 96.3 307 32.9
Manes.13G035300 Manihot esculenta HOM05D003718 ORTHO05D004402 4.3e-18 96.3 304 31.9
Manes.12G033700 Manihot esculenta HOM05D003718 ORTHO05D004402 5.6e-18 95.9 304 31.9
Mapoly0028s0115 Marchantia polymorpha HOM05D003718 ORTHO05D004402 5.6e-18 95.9 277 33.9
Sopen07g005600 Solanum pennellii HOM05D003718 ORTHO05D004402 5.6e-18 95.9 220 35.0
Glyma.03G164400 Glycine max HOM05D003718 ORTHO05D004402 7.3e-18 95.5 285 32.3
Gorai.007G147600 Gossypium raimondii HOM05D003718 ORTHO05D004402 7.3e-18 95.5 221 35.3
VMungo0720G0687 Vigna mungo HOM05D003718 ORTHO05D004402 7.3e-18 95.5 220 35.0
Peaxi162Scf00320g00717 Petunia axillaris HOM05D003718 ORTHO05D004402 9.5e-18 95.1 217 35.9
RcHm_v2.0_Chr6g0287811 Rosa chinensis HOM05D003718 ORTHO05D004402 9.5e-18 95.1 301 33.2
TWI12G1081 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 1.2e-17 94.7 301 31.2
SalBow4G0483 Salvia bowleyana HOM05D003718 ORTHO05D004402 1.6e-17 94.4 276 33.0
Solyc07g014700.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 1.6e-17 94.4 218 35.3
Cfa013046 Carpinus fangiana HOM05D003718 ORTHO05D004402 2.1e-17 94.0 301 32.2
CiPaw.03G266000 Carya illinoinensis HOM05D003718 ORTHO05D004402 2.1e-17 94.0 300 31.7
Glyma.19G165800 Glycine max HOM05D003718 ORTHO05D004402 2.1e-17 94.0 216 36.6
Phvul.001G162000 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 2.1e-17 94.0 291 33.3
TAR633G0796 Trochodendron aralioides HOM05D003718 ORTHO05D004402 2.1e-17 94.0 299 31.1
HPP92_000351 Vanilla planifolia HOM05D003718 ORTHO05D004402 2.1e-17 94.0 216 34.7
TWI75G1389 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 2.8e-17 93.6 301 32.2
TAR362G0778 Trochodendron aralioides HOM05D003718 ORTHO05D004402 2.8e-17 93.6 301 30.2
ECA236G3831 Erigeron canadensis HOM05D003718 ORTHO05D004402 3.6e-17 93.2 304 32.2
arahy.Tifrunner.gnm1.ann1.EWE7BX Arachis hypogaea HOM05D003718 ORTHO05D004402 4.7e-17 92.8 218 34.9
EL10Ac1g00739 Beta vulgaris HOM05D003718 ORTHO05D004402 4.7e-17 92.8 169 42.0
Lsat_1_v5_gn_8_92540 Lactuca sativa HOM05D003718 ORTHO05D004402 4.7e-17 92.8 291 31.3
TPR.G9204 Trifolium pratense HOM05D003718 ORTHO05D004402 4.7e-17 92.8 218 37.6
Cpa.g.sc20.44 Carica papaya HOM05D003718 ORTHO05D004402 6.2e-17 92.4 306 31.4
Eucgr.K03255 Eucalyptus grandis HOM05D003718 ORTHO05D004402 6.2e-17 92.4 300 31.0
Hma1.2p1_0273F.1_g109540 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 6.2e-17 92.4 303 31.0
Zm00001eb143710 Zea mays HOM05D003718 ORTHO05D004402 8.1e-17 92.0 295 31.2
ATR0736G006 Amborella trichopoda HOM05D003718 ORTHO05D004402 1.1e-16 91.7 301 30.9
Dinv34637 Davidia involucrata HOM05D003718 ORTHO05D004402 1.1e-16 91.7 304 30.3
MD05G1194900 Malus domestica HOM05D003718 ORTHO05D004402 1.1e-16 91.7 280 32.5
CiPaw.04G187700 Carya illinoinensis HOM05D003718 ORTHO05D004402 1.4e-16 91.3 293 32.1
Lsat_1_v5_gn_5_182920 Lactuca sativa HOM05D003718 ORTHO05D004402 1.4e-16 91.3 300 29.7
Zm00001eb365020 Zea mays HOM05D003718 ORTHO05D004402 1.4e-16 91.3 220 36.4
arahy.Tifrunner.gnm1.ann1.QXN52H Arachis hypogaea HOM05D003718 ORTHO05D004402 1.8e-16 90.9 303 32.3
CDE07G1087 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 1.8e-16 90.9 307 29.0
Sp7g19230 Schrenkiella parvula HOM05D003718 ORTHO05D004402 1.8e-16 90.9 213 35.7
THA.LOC104812416 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 1.8e-16 90.9 224 34.8
Nn3g19693 Nelumbo nucifera HOM05D003718 ORTHO05D004402 2.4e-16 90.5 299 30.8
Psat3g056400 Pisum sativum HOM05D003718 ORTHO05D004402 2.4e-16 90.5 277 32.5
PGR031G0689 Punica granatum HOM05D003718 ORTHO05D004402 2.4e-16 90.5 302 32.1
Nitab4.5_0001572g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 3.1e-16 90.1 169 40.2
AL7G32970 Arabidopsis lyrata HOM05D003718 ORTHO05D004402 4.0e-16 89.7 213 35.2
arahy.Tifrunner.gnm1.ann1.B1YDGW Arachis hypogaea HOM05D003718 ORTHO05D004402 4.0e-16 89.7 300 30.7
CARHR227730 Cardamine hirsuta HOM05D003718 ORTHO05D004402 4.0e-16 89.7 214 35.0
Ca_09672_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 4.0e-16 89.7 302 33.8
Actinidia07305 Actinidia chinensis HOM05D003718 ORTHO05D004402 5.2e-16 89.4 304 29.6
CDE04G2599 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 6.8e-16 89.0 221 33.0
BcaNung03839 Brassica carinata HOM05D003718 ORTHO05D004402 8.9e-16 88.6 213 36.2
CAN.G54.7 Capsicum annuum HOM05D003718 ORTHO05D004402 8.9e-16 88.6 220 35.0
BcaC09g51252 Brassica carinata HOM05D003718 ORTHO05D004402 1.2e-15 88.2 213 35.7
FvH4_2g21250 Fragaria vesca HOM05D003718 ORTHO05D004402 1.2e-15 88.2 301 31.9
BcaC01g00710 Brassica carinata HOM05D003718 ORTHO05D004402 1.5e-15 87.8 220 35.9
Ca_08683_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 1.5e-15 87.8 277 32.5
Thhalv10024580m.g Eutrema salsugineum HOM05D003718 ORTHO05D004402 1.5e-15 87.8 213 35.2
Phvul.007G191800 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 1.5e-15 87.8 303 30.7
Potri.002G036600 Populus trichocarpa HOM05D003718 ORTHO05D004402 1.5e-15 87.8 304 29.9
Solyc05g046330.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 1.5e-15 87.8 299 29.8
FAN27G0576 Fragaria x ananassa HOM05D003718 ORTHO05D004402 2.6e-15 87.0 301 31.6
Oeu052043.2 Olea europaea HOM05D003718 ORTHO05D004402 2.6e-15 87.0 218 36.2
Sopen05g027610 Solanum pennellii HOM05D003718 ORTHO05D004402 2.6e-15 87.0 299 29.4
THA.LOC104806254 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 2.6e-15 87.0 299 31.1
Lj1C68G8 Lonicera japonica HOM05D003718 ORTHO05D004402 3.4e-15 86.7 271 31.4
FAN15G3248 Fragaria x ananassa HOM05D003718 ORTHO05D004402 4.4e-15 86.3 301 31.6
PSO832G2930 Papaver somniferum HOM05D003718 ORTHO05D004402 4.4e-15 86.3 307 32.6
AT4G21150 Arabidopsis thaliana HOM05D003718 ORTHO05D004402 5.8e-15 85.9 214 34.1
Carub.0007s2028 Capsella rubella HOM05D003718 ORTHO05D004402 7.6e-15 85.5 284 31.0
CSS0040480 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 9.9e-15 85.1 301 28.9
AUR62023389 Chenopodium quinoa HOM05D003718 ORTHO05D004402 9.9e-15 85.1 172 40.1
Cc01_g18200 Coffea canephora HOM05D003718 ORTHO05D004402 9.9e-15 85.1 220 31.8
Potri.005G226100 Populus trichocarpa HOM05D003718 ORTHO05D004402 9.9e-15 85.1 305 29.5
Lalb_Chr02g0152551 Lupinus albus HOM05D003718 ORTHO05D004402 1.3e-14 84.7 280 31.4
PSO210G5136 Papaver somniferum HOM05D003718 ORTHO05D004402 1.3e-14 84.7 307 32.6
BraA03t14340Z Brassica rapa HOM05D003718 ORTHO05D004402 2.2e-14 84.0 224 34.8
CSS0049010 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 2.2e-14 84.0 304 29.6
FAN24G2691 Fragaria x ananassa HOM05D003718 ORTHO05D004402 2.2e-14 84.0 301 31.9
MSTRG.21485 Avicennia marina HOM05D003718 ORTHO05D004402 2.9e-14 83.6 220 34.5
DCAR_000921 Daucus carota HOM05D003718 ORTHO05D004402 2.9e-14 83.6 301 30.6
Lalb_Chr21g0313961 Lupinus albus HOM05D003718 ORTHO05D004402 2.9e-14 83.6 218 34.4
Sabra05G0174600 Salix brachista HOM05D003718 ORTHO05D004402 2.9e-14 83.6 305 29.5
vmacro14814 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 2.9e-14 83.6 303 29.7
Glyma.10G038000 Glycine max HOM05D003718 ORTHO05D004402 3.8e-14 83.2 295 31.2
Nitab4.5_0000413g0180 Nicotiana tabacum HOM05D003718 ORTHO05D004402 3.8e-14 83.2 168 39.3
CAN.G106.18 Capsicum annuum HOM05D003718 ORTHO05D004402 6.4e-14 82.4 299 31.4
CsaV3_1G015830 Cucumis sativus L. HOM05D003718 ORTHO05D004402 1.1e-13 81.6 301 30.6
BolC1t01458H Brassica oleracea HOM05D003718 ORTHO05D004402 1.4e-13 81.3 213 35.2
A03p52670 Brassica napus HOM05D003718 ORTHO05D004402 1.9e-13 80.9 224 34.4
MELO3C025537.2 Cucumis melo HOM05D003718 ORTHO05D004402 1.9e-13 80.9 301 29.9
SGA_v2.0_scaffold1G00624 Striga asiatica HOM05D003718 ORTHO05D004402 1.9e-13 80.9 277 32.1
CBR_g32152 Chara braunii HOM05D003718 ORTHO05D004402 2.4e-13 80.5 282 30.5
Sed0001928 Sechium edule HOM05D003718 ORTHO05D004402 2.4e-13 80.5 306 29.1
Migut.D00439 Erythranthe guttata HOM05D003718 ORTHO05D004402 5.4e-13 79.3 217 34.6
C01p15100 Brassica napus HOM05D003718 ORTHO05D004402 7.1e-13 79.0 218 34.9
ClCG03G002590 Citrullus lanatus HOM05D003718 ORTHO05D004402 7.1e-13 79.0 169 38.5
SGA_v2.0_scaffold138G35211 Striga asiatica HOM05D003718 ORTHO05D004402 7.1e-13 79.0 273 32.2
C03p83480 Brassica napus HOM05D003718 ORTHO05D004402 9.2e-13 78.6 198 33.3
vmacro02673 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 9.2e-13 78.6 246 30.5
HanXRQChr11g0336771 Helianthus annuus HOM05D003718 ORTHO05D004402 1.2e-12 78.2 220 32.7
AagrBONN_evm.TU.Sc2ySwM_340.234 Anthoceros agrestis HOM05D003718 ORTHO05D004402 2.1e-12 77.4 174 36.2
unitig_8.g3735 Utricularia gibba HOM05D003718 ORTHO05D004402 2.1e-12 77.4 163 35.0
Hund17111 Selenicereus undatus HOM05D003718 ORTHO05D004402 2.7e-12 77.0 262 32.1
C07p51100 Brassica napus HOM05D003718 ORTHO05D004402 6.0e-12 75.9 221 33.5
BolC7t45610H Brassica oleracea HOM05D003718 ORTHO05D004402 6.0e-12 75.9 221 33.5
Sabra02G0029600 Salix brachista HOM05D003718 ORTHO05D004402 1.7e-11 74.3 300 28.3
BraA01t01195Z Brassica rapa HOM05D003718 ORTHO05D004402 3.0e-11 73.6 256 30.5
unitig_22.g5287 Utricularia gibba HOM05D003718 ORTHO05D004402 3.0e-11 73.6 233 31.8
Peaxi162Scf00906g00225 Petunia axillaris HOM05D003718 ORTHO05D004402 3.9e-11 73.2 214 33.6
A01p12510 Brassica napus HOM05D003718 ORTHO05D004402 5.1e-11 72.8 290 29.7
BolC3t20629H Brassica oleracea HOM05D003718 ORTHO05D004402 5.1e-11 72.8 222 31.5
Actinidia09538 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.1e-10 71.6 136 40.4
Aa31LG6G3160 Aethionema arabicum HOM05D003718 ORTHO05D004402 1.1e-10 71.6 254 31.5
Rhsim01G0262400 Rhododendron simsii HOM05D003718 ORTHO05D004402 3.3e-10 70.1 185 33.5
EL10Ac1g02094 Beta vulgaris HOM05D003718 ORTHO05D004402 4.3e-10 69.7 281 28.8
SMO367G0218 Selaginella moellendorffii HOM05D003718 ORTHO05D004402 4.3e-10 69.7 138 38.4
CsaV3_UNG055470 Cucumis sativus L. HOM05D003718 ORTHO05D004402 1.2e-07 61.6 268 29.9
Cfa026969 Carpinus fangiana HOM05D003718 ORTHO05D004402 2.9e-06 57.0 289 26.3
Sc02g0003190 Simmondsia chinensis HOM05D003718 ORTHO05D004402 8.4e-06 55.5 136 32.4


User provided reference genes

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