Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre08.g360250 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 0.0e+00 1320.8 722 100.0
Cre08.g360200 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 5.2e-304 1047.3 661 80.8
Cre17.g703800 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 3.9e-283 978.0 640 77.8
Thhalv10000803m.g Eutrema salsugineum HOM05D004914 ORTHO05D006512 2.4e-168 596.7 662 48.2
Nn1g02045 Nelumbo nucifera HOM05D004914 ORTHO05D006512 7.1e-168 595.1 636 49.2
Mapoly0022s0194 Marchantia polymorpha HOM05D004914 ORTHO05D006512 1.2e-167 594.3 652 49.5
BcaC04g21765 Brassica carinata HOM05D004914 ORTHO05D006512 6.0e-167 592.0 661 47.5
C09p27840 Brassica napus HOM05D004914 ORTHO05D006512 6.0e-167 592.0 661 47.5
BolC9t55648H Brassica oleracea HOM05D004914 ORTHO05D006512 6.0e-167 592.0 661 47.5
Sp2g10330 Schrenkiella parvula HOM05D004914 ORTHO05D006512 7.8e-167 591.7 660 47.6
BcaB07g30888 Brassica carinata HOM05D004914 ORTHO05D006512 1.0e-166 591.3 661 47.7
A09p21740 Brassica napus HOM05D004914 ORTHO05D006512 1.0e-166 591.3 661 47.7
BraA09t37776Z Brassica rapa HOM05D004914 ORTHO05D006512 1.3e-166 590.9 661 47.5
Carub.0008s0273 Capsella rubella HOM05D004914 ORTHO05D006512 2.3e-166 590.1 662 47.3
Pp3c1_21890 Physcomitrium patens HOM05D004914 ORTHO05D006512 3.0e-166 589.7 653 49.0
Medtr5g026640 Medicago truncatula HOM05D004914 ORTHO05D006512 3.9e-166 589.3 647 48.7
TPR.G17253 Trifolium pratense HOM05D004914 ORTHO05D006512 3.9e-166 589.3 638 49.2
Pp3c14_7160 Physcomitrium patens HOM05D004914 ORTHO05D006512 6.6e-166 588.6 641 49.1
TWI12G0750 Tripterygium wilfordii HOM05D004914 ORTHO05D006512 6.6e-166 588.6 642 49.1
Glyma.04G123700 Glycine max HOM05D004914 ORTHO05D006512 8.7e-166 588.2 638 50.0
PSO717G0130 Papaver somniferum HOM05D004914 ORTHO05D006512 8.7e-166 588.2 634 49.1
Potri.003G104000 Populus trichocarpa HOM05D004914 ORTHO05D006512 8.7e-166 588.2 638 48.6
VMungo1215G3133 Vigna mungo HOM05D004914 ORTHO05D006512 8.7e-166 588.2 638 50.0
Lj2g0015407 Lotus japonicus HOM05D004914 ORTHO05D006512 1.5e-165 587.4 639 49.3
Nn3g19257 Nelumbo nucifera HOM05D004914 ORTHO05D006512 1.5e-165 587.4 639 49.3
Migut.A00542 Erythranthe guttata HOM05D004914 ORTHO05D006512 3.3e-165 586.3 636 49.2
Phvul.002G127200 Phaseolus vulgaris HOM05D004914 ORTHO05D006512 4.3e-165 585.9 638 50.0
Aa31LG9G7630 Aethionema arabicum HOM05D004914 ORTHO05D006512 5.6e-165 585.5 641 48.0
CARHR176690 Cardamine hirsuta HOM05D004914 ORTHO05D006512 5.6e-165 585.5 651 47.8
CiPaw.13G121600 Carya illinoinensis HOM05D004914 ORTHO05D006512 5.6e-165 585.5 628 49.7
Eucgr.E01217 Eucalyptus grandis HOM05D004914 ORTHO05D006512 5.6e-165 585.5 638 49.1
MD06G1017300 Malus domestica HOM05D004914 ORTHO05D006512 5.6e-165 585.5 638 49.1
Cc08_g05310 Coffea canephora HOM05D004914 ORTHO05D006512 1.6e-164 583.9 636 48.7
Peaxi162Scf00053g00525 Petunia axillaris HOM05D004914 ORTHO05D006512 2.1e-164 583.6 638 49.4
TAR375G1103 Trochodendron aralioides HOM05D004914 ORTHO05D006512 2.1e-164 583.6 634 48.9
SEGI_38788 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 2.8e-164 583.2 643 47.9
ATR0829G119 Amborella trichopoda HOM05D004914 ORTHO05D006512 3.6e-164 582.8 634 49.4
Psat2g142640 Pisum sativum HOM05D004914 ORTHO05D006512 3.6e-164 582.8 638 49.1
CANSAT35G0949 Cannabis sativa HOM05D004914 ORTHO05D006512 4.8e-164 582.4 656 48.2
Prupe.5G019100 Prunus persica HOM05D004914 ORTHO05D006512 4.8e-164 582.4 639 48.8
Aqoxy7G00885 Aquilegia oxysepala HOM05D004914 ORTHO05D006512 6.2e-164 582.0 651 48.2
AT5G45380 Arabidopsis thaliana HOM05D004914 ORTHO05D006512 6.2e-164 582.0 661 47.2
SMO134G0146 Selaginella moellendorffii HOM05D004914 ORTHO05D006512 6.2e-164 582.0 643 48.5
RcHm_v2.0_Chr7g0213721 Rosa chinensis HOM05D004914 ORTHO05D006512 8.1e-164 581.6 640 48.9
MSTRG.25735 Avicennia marina HOM05D004914 ORTHO05D006512 1.1e-163 581.3 647 48.1
Lsat_1_v5_gn_5_55660 Lactuca sativa HOM05D004914 ORTHO05D006512 1.4e-163 580.9 638 48.3
Dinv37416 Davidia involucrata HOM05D004914 ORTHO05D006512 1.8e-163 580.5 638 48.3
SalBow4G0569 Salvia bowleyana HOM05D004914 ORTHO05D006512 2.4e-163 580.1 638 48.1
Manes.17G007000 Manihot esculenta HOM05D004914 ORTHO05D006512 3.1e-163 579.7 634 48.3
ECA240G3397 Erigeron canadensis HOM05D004914 ORTHO05D006512 4.0e-163 579.3 634 48.3
FvH4_5g24140 Fragaria vesca HOM05D004914 ORTHO05D006512 4.0e-163 579.3 640 48.8
CSS0049486 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 6.9e-163 578.6 639 48.0
CsaV3_3G001000 Cucumis sativus L. HOM05D004914 ORTHO05D006512 6.9e-163 578.6 639 48.4
Solyc08g075570.4 Solanum lycopersicum HOM05D004914 ORTHO05D006512 9.0e-163 578.2 638 48.6
A02p29100 Brassica napus HOM05D004914 ORTHO05D006512 1.2e-162 577.8 645 47.1
MELO3C013790.2 Cucumis melo HOM05D004914 ORTHO05D006512 1.2e-162 577.8 639 48.2
GSVIVG01022810001 Vitis vinifera HOM05D004914 ORTHO05D006512 1.5e-162 577.4 639 48.7
Lalb_Chr05g0215361 Lupinus albus HOM05D004914 ORTHO05D006512 2.6e-162 576.6 658 47.6
RcHm_v2.0_Chr7g0213811 Rosa chinensis HOM05D004914 ORTHO05D006512 2.6e-162 576.6 640 48.8
BcaB07g30458 Brassica carinata HOM05D004914 ORTHO05D006512 3.4e-162 576.2 642 47.2
BraA02t07943Z Brassica rapa HOM05D004914 ORTHO05D006512 3.4e-162 576.2 645 47.0
CDE12G0485 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 4.5e-162 575.9 641 48.2
Ciclev10000444m.g Citrus clementina HOM05D004914 ORTHO05D006512 4.5e-162 575.9 638 48.3
HanXRQChr13g0411091 Helianthus annuus HOM05D004914 ORTHO05D006512 4.5e-162 575.9 638 47.6
Eucgr.E01215 Eucalyptus grandis HOM05D004914 ORTHO05D006512 5.8e-162 575.5 639 49.3
PGR042G1968 Punica granatum HOM05D004914 ORTHO05D006512 5.8e-162 575.5 655 47.9
HPP92_015125 Vanilla planifolia HOM05D004914 ORTHO05D006512 7.6e-162 575.1 638 48.0
Sopen08g024250 Solanum pennellii HOM05D004914 ORTHO05D006512 1.7e-161 573.9 638 48.4
Oeu046797.1 Olea europaea HOM05D004914 ORTHO05D006512 2.9e-161 573.2 641 48.8
CSS0032490 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 3.8e-161 572.8 639 48.0
Sed0010004 Sechium edule HOM05D004914 ORTHO05D006512 4.9e-161 572.4 626 48.2
CSS0043328 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 8.4e-161 571.6 639 47.9
RcHm_v2.0_Chr4g0401521 Rosa chinensis HOM05D004914 ORTHO05D006512 8.4e-161 571.6 638 48.6
BcaC03g16746 Brassica carinata HOM05D004914 ORTHO05D006512 1.1e-160 571.2 645 46.8
BolC2t10674H Brassica oleracea HOM05D004914 ORTHO05D006512 1.1e-160 571.2 645 46.8
Duzib205G0746 Durio zibethinus HOM05D004914 ORTHO05D006512 1.1e-160 571.2 638 47.3
Atru.chr6.2105 Acer truncatum HOM05D004914 ORTHO05D006512 1.4e-160 570.9 643 48.2
C02p46180 Brassica napus HOM05D004914 ORTHO05D006512 1.4e-160 570.9 645 46.8
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 1.9e-160 570.5 639 48.2
Thecc.03G324700 Theobroma cacao HOM05D004914 ORTHO05D006512 2.4e-160 570.1 638 47.5
RcHm_v2.0_Chr4g0401421 Rosa chinensis HOM05D004914 ORTHO05D006512 9.3e-160 568.2 638 48.4
Sabra03G0071100 Salix brachista HOM05D004914 ORTHO05D006512 1.6e-159 567.4 666 46.4
ClCG10G000930 Citrullus lanatus HOM05D004914 ORTHO05D006512 3.0e-158 563.1 638 46.7
Gorai.005G228700 Gossypium raimondii HOM05D004914 ORTHO05D006512 3.0e-158 563.1 633 46.8
Os10g0580400 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D006512 3.0e-158 563.1 652 48.5
Zm00001eb279810 Zea mays HOM05D004914 ORTHO05D006512 6.7e-158 562.0 651 48.1
Gohir.D02G202952 Gossypium hirsutum HOM05D004914 ORTHO05D006512 8.1e-156 555.1 634 46.7
Eucgr.E01216 Eucalyptus grandis HOM05D004914 ORTHO05D006512 1.5e-154 550.8 594 49.2
arahy.Tifrunner.gnm1.ann1.AE6EEZ Arachis hypogaea HOM05D004914 ORTHO05D006512 2.6e-154 550.1 646 47.1
arahy.Tifrunner.gnm1.ann1.Q0IN0Q Arachis hypogaea HOM05D004914 ORTHO05D006512 2.6e-154 550.1 646 47.1
DCAR_006313 Daucus carota HOM05D004914 ORTHO05D006512 3.4e-154 549.7 652 46.8
AL8G13420 Arabidopsis lyrata HOM05D004914 ORTHO05D006512 7.6e-154 548.5 662 45.5
Ca_25087_v3 Cicer arietinum L. HOM05D004914 ORTHO05D006512 1.0e-153 548.1 605 48.8
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 7.1e-152 542.0 594 48.5
CSS0023780 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.3e-150 537.7 639 46.2
MCO16G134 Micromonas commoda HOM05D004914 ORTHO05D006512 3.3e-149 533.1 664 45.5
CSS0040630 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.8e-148 530.0 668 44.5
EL10Ac5g11909 Beta vulgaris HOM05D004914 ORTHO05D006512 2.6e-146 523.5 641 46.0
Actinidia01258 Actinidia chinensis HOM05D004914 ORTHO05D006512 2.2e-145 520.4 639 45.5
Gohir.A03G179800 Gossypium hirsutum HOM05D004914 ORTHO05D006512 5.5e-144 515.8 549 48.5
Mapoly0244s0005 Marchantia polymorpha HOM05D004914 ORTHO05D006512 5.5e-144 515.8 529 52.2
Nitab4.5_0016045g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 3.0e-142 510.0 516 50.6
QL12p001913 Quercus lobata HOM05D004914 ORTHO05D006512 3.0e-142 510.0 638 45.1
QL12p001923 Quercus lobata HOM05D004914 ORTHO05D006512 5.1e-142 509.2 640 45.9
vmacro00075 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 1.5e-141 507.7 645 44.5
CAN.G1731.1 Capsicum annuum HOM05D004914 ORTHO05D006512 2.5e-141 506.9 638 44.7
Rhsim11G0034500 Rhododendron simsii HOM05D004914 ORTHO05D006512 2.2e-140 503.8 642 44.7
FAN04G0884 Fragaria x ananassa HOM05D004914 ORTHO05D006512 3.8e-137 493.0 661 43.6
SGA_v2.0_scaffold96G29079 Striga asiatica HOM05D004914 ORTHO05D006512 1.2e-135 488.0 637 44.4
FAN13G2505 Fragaria x ananassa HOM05D004914 ORTHO05D006512 1.6e-135 487.6 661 43.3
unitig_92.g28131 Utricularia gibba HOM05D004914 ORTHO05D006512 4.8e-132 476.1 648 42.9
AUR62027313 Chenopodium quinoa HOM05D004914 ORTHO05D006512 4.5e-130 469.5 544 47.8
AagrBONN_evm.TU.Sc2ySwM_117.1801 Anthoceros agrestis HOM05D004914 ORTHO05D006512 5.9e-130 469.2 648 40.0
CSS0001315 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.1e-128 464.9 651 41.9
AagrBONN_evm.TU.Sc2ySwM_117.1769 Anthoceros agrestis HOM05D004914 ORTHO05D006512 2.1e-127 460.7 633 39.7
FAN18G4324 Fragaria x ananassa HOM05D004914 ORTHO05D006512 4.7e-127 459.5 530 48.1
PGSC0003DMG401007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 2.0e-125 454.1 428 53.7
AagrBONN_evm.TU.Sc2ySwM_344.881 Anthoceros agrestis HOM05D004914 ORTHO05D006512 2.8e-124 450.3 528 47.7
Mapoly0006s0303 Marchantia polymorpha HOM05D004914 ORTHO05D006512 9.1e-123 445.3 623 39.2
CDE01G0684 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 3.2e-120 436.8 628 41.1
AagrBONN_evm.TU.Sc2ySwM_228.2050 Anthoceros agrestis HOM05D004914 ORTHO05D006512 3.0e-118 430.3 623 41.6
vmacro00050 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 3.9e-118 429.9 588 42.2
SEGI_09515 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 9.7e-117 425.2 411 52.8
Lj8C331T9 Lonicera japonica HOM05D004914 ORTHO05D006512 8.2e-116 422.2 660 40.2
SEGI_28013 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 3.5e-114 416.8 377 54.9
AUR62007419 Chenopodium quinoa HOM05D004914 ORTHO05D006512 2.0e-109 401.0 484 46.3
AagrBONN_evm.TU.Sc2ySwM_228.2053 Anthoceros agrestis HOM05D004914 ORTHO05D006512 1.4e-102 378.3 391 50.1
CSS0015562 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.0e-101 374.4 519 43.7
COL.COLO4_37234 Corchorus olitorius HOM05D004914 ORTHO05D006512 4.6e-90 336.7 579 37.1
Nitab4.5_0011552g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 3.2e-83 313.9 519 38.5
CSS0048600 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.7e-82 310.8 373 47.5
Mapoly0339s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 3.3e-64 250.8 239 54.0
Oeu046798.1 Olea europaea HOM05D004914 ORTHO05D006512 1.4e-46 192.2 178 53.9
SEGI_18257 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 1.6e-42 178.7 265 37.7
CSS0040069 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 5.1e-41 173.7 390 32.8
SEGI_16876 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 7.6e-37 159.8 206 43.7
FAN18G1875 Fragaria x ananassa HOM05D004914 ORTHO05D006512 5.7e-24 117.1 104 51.0
CSS0006727 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 4.1e-22 110.9 171 41.5
CSS0011428 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 9.0e-22 109.8 78 61.5
PGSC0003DMG402007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 1.1e-19 102.8 171 36.8
arahy.Tifrunner.gnm1.ann1.N8W4DB Arachis hypogaea HOM05D004914 ORTHO05D000389 7.7e-13 80.1 61 60.7
arahy.Tifrunner.gnm1.ann1.3D8EL1 Arachis hypogaea HOM05D004914 ORTHO05D000389 4.2e-11 74.3 59 59.3
AagrBONN_evm.TU.Sc2ySwM_117.1738 Anthoceros agrestis HOM05D004914 ORTHO05D038447 7.9e-10 70.1 90 44.4
Mapoly1910s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 1.4e-09 69.3 88 43.2
Os02g0689066 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D038447 7.0e-06 57.0 36 69.4


User provided reference genes

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