Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre08.g359100 Chlamydomonas reinhardtii HOM05D004862 ORTHO05D005841 4.2e-256 887.5 435 100.0
Ciclev10015108m.g Citrus clementina HOM05D004862 ORTHO05D005841 7.9e-106 388.3 378 51.1
MSTRG.16558 Avicennia marina HOM05D004862 ORTHO05D005841 2.6e-104 383.3 443 46.0
Mapoly0006s0193 Marchantia polymorpha HOM05D004862 ORTHO05D005841 5.7e-104 382.1 438 47.3
Glyma.08G075600 Glycine max HOM05D004862 ORTHO05D005841 1.3e-103 380.9 386 49.5
COL.COLO4_33088 Corchorus olitorius HOM05D004862 ORTHO05D005841 1.7e-103 380.6 386 49.0
Gohir.A13G061500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 1.7e-103 380.6 387 50.4
Gohir.D13G060400 Gossypium hirsutum HOM05D004862 ORTHO05D005841 2.2e-103 380.2 386 49.7
SGA_v2.0_scaffold332G48937 Striga asiatica HOM05D004862 ORTHO05D005841 2.2e-103 380.2 444 46.6
Ah.04g163010 Amaranthus hybridus HOM05D004862 ORTHO05D005841 3.7e-103 379.4 385 49.4
Solyc10g047120.2 Solanum lycopersicum HOM05D004862 ORTHO05D005841 4.8e-103 379.0 386 49.5
Pp3c13_18080 Physcomitrium patens HOM05D004862 ORTHO05D005841 6.3e-103 378.6 392 49.2
PGR042G3925 Punica granatum HOM05D004862 ORTHO05D005841 6.3e-103 378.6 449 45.0
Nn1g06191 Nelumbo nucifera HOM05D004862 ORTHO05D005841 1.1e-102 377.9 392 48.7
Sopen10g017280 Solanum pennellii HOM05D004862 ORTHO05D005841 1.4e-102 377.5 386 49.5
Migut.B00646 Erythranthe guttata HOM05D004862 ORTHO05D005841 4.1e-102 375.9 444 45.0
Glyma.05G121000 Glycine max HOM05D004862 ORTHO05D005841 4.1e-102 375.9 386 49.0
Phvul.002G205600 Phaseolus vulgaris HOM05D004862 ORTHO05D005841 4.1e-102 375.9 379 49.1
CDE02G2941 Ceratophyllum demersum HOM05D004862 ORTHO05D005841 5.3e-102 375.6 439 44.6
Lsat_1_v5_gn_9_117961 Lactuca sativa HOM05D004862 ORTHO05D005841 7.0e-102 375.2 440 45.2
CSS0014529 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 9.1e-102 374.8 384 49.2
Dinv24234 Davidia involucrata HOM05D004862 ORTHO05D005841 9.1e-102 374.8 379 50.1
CSS0027197 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 1.2e-101 374.4 384 49.2
SEGI_34202 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 1.5e-101 374.0 391 47.6
CANSAT54G0577 Cannabis sativa HOM05D004862 ORTHO05D005841 2.0e-101 373.6 437 46.7
CBR_g37214 Chara braunii HOM05D004862 ORTHO05D005841 2.0e-101 373.6 438 47.3
Lj9A317G73 Lonicera japonica HOM05D004862 ORTHO05D005841 2.6e-101 373.2 387 48.8
Manes.14G165200 Manihot esculenta HOM05D004862 ORTHO05D005841 2.6e-101 373.2 434 46.3
Nitab4.5_0005079g0020 Nicotiana tabacum HOM05D004862 ORTHO05D005841 2.6e-101 373.2 379 49.3
Potri.001G207000 Populus trichocarpa HOM05D004862 ORTHO05D005841 3.5e-101 372.9 395 49.1
Aqoxy6G00342 Aquilegia oxysepala HOM05D004862 ORTHO05D005841 4.5e-101 372.5 416 46.6
Gorai.013G068500 Gossypium raimondii HOM05D004862 ORTHO05D005841 4.5e-101 372.5 400 47.8
FAN09G3019 Fragaria x ananassa HOM05D004862 ORTHO05D005841 5.9e-101 372.1 394 49.2
FAN14G4788 Fragaria x ananassa HOM05D004862 ORTHO05D005841 5.9e-101 372.1 394 49.2
FAN14G5837 Fragaria x ananassa HOM05D004862 ORTHO05D005841 5.9e-101 372.1 394 49.2
FAN02G3155 Fragaria x ananassa HOM05D004862 ORTHO05D005841 7.7e-101 371.7 394 49.2
CiPaw.13G145700 Carya illinoinensis HOM05D004862 ORTHO05D005841 1.0e-100 371.3 439 45.8
Cc02_g18820 Coffea canephora HOM05D004862 ORTHO05D005841 1.3e-100 370.9 396 48.5
SMO115G0021 Selaginella moellendorffii HOM05D004862 ORTHO05D005841 1.3e-100 370.9 391 47.8
FvH4_6g05370 Fragaria vesca HOM05D004862 ORTHO05D005841 1.7e-100 370.5 394 49.0
Rhsim11G0133700 Rhododendron simsii HOM05D004862 ORTHO05D005841 1.7e-100 370.5 379 49.1
Sc09g0004450 Simmondsia chinensis HOM05D004862 ORTHO05D005841 1.7e-100 370.5 398 48.5
Ca_29818_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 2.2e-100 370.2 439 46.0
Oeu000228.1 Olea europaea HOM05D004862 ORTHO05D005841 2.2e-100 370.2 395 47.3
CAN.G1.65 Capsicum annuum HOM05D004862 ORTHO05D005841 2.9e-100 369.8 395 48.4
FAN05G4126 Fragaria x ananassa HOM05D004862 ORTHO05D005841 2.9e-100 369.8 394 48.7
Medtr4g094315 Medicago truncatula HOM05D004862 ORTHO05D005841 2.9e-100 369.8 422 46.9
arahy.Tifrunner.gnm1.ann1.WE1E8S Arachis hypogaea HOM05D004862 ORTHO05D005841 3.8e-100 369.4 439 44.9
Hund06875 Selenicereus undatus HOM05D004862 ORTHO05D005841 3.8e-100 369.4 394 47.5
Os02g0556400 Oryza sativa ssp. japonica HOM05D004862 ORTHO05D005841 5.0e-100 369.0 450 46.2
arahy.Tifrunner.gnm1.ann1.34Q84K Arachis hypogaea HOM05D004862 ORTHO05D005841 6.5e-100 368.6 439 44.9
THA.LOC104818254 Tarenaya hassleriana HOM05D004862 ORTHO05D005841 8.5e-100 368.2 436 45.0
DCAR_021834 Daucus carota HOM05D004862 ORTHO05D005841 1.5e-99 367.5 379 47.5
Duzib132G0210 Durio zibethinus HOM05D004862 ORTHO05D005841 1.5e-99 367.5 435 44.8
Lj5A244T54 Lonicera japonica HOM05D004862 ORTHO05D005841 1.5e-99 367.5 379 48.3
Gohir.A01G012300 Gossypium hirsutum HOM05D004862 ORTHO05D005841 1.9e-99 367.1 435 45.5
Nitab4.5_0000078g0200 Nicotiana tabacum HOM05D004862 ORTHO05D005841 1.9e-99 367.1 435 44.8
VMungo0251G1232 Vigna mungo HOM05D004862 ORTHO05D005841 1.9e-99 367.1 404 46.8
ECA240G2004 Erigeron canadensis HOM05D004862 ORTHO05D005841 2.5e-99 366.7 387 47.3
Thecc.02G156500 Theobroma cacao HOM05D004862 ORTHO05D005841 4.2e-99 365.9 386 48.2
Gohir.D01G013500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 5.5e-99 365.5 386 48.2
TWI23G0249 Tripterygium wilfordii HOM05D004862 ORTHO05D005841 5.5e-99 365.5 395 47.1
Haze_23539 Corylus avellana HOM05D004862 ORTHO05D005841 7.2e-99 365.2 387 48.1
HanXRQChr03g0065771 Helianthus annuus HOM05D004862 ORTHO05D005841 7.2e-99 365.2 380 47.1
RcHm_v2.0_Chr3g0454151 Rosa chinensis HOM05D004862 ORTHO05D005841 7.2e-99 365.2 443 44.9
Psat7g096360 Pisum sativum HOM05D004862 ORTHO05D005841 1.6e-98 364.0 436 45.4
AT3G26410 Arabidopsis thaliana HOM05D004862 ORTHO05D005841 2.1e-98 363.6 446 44.2
AUR62003397 Chenopodium quinoa HOM05D004862 ORTHO05D005841 2.1e-98 363.6 392 48.0
Gorai.002G015300 Gossypium raimondii HOM05D004862 ORTHO05D005841 2.1e-98 363.6 435 45.1
MD12G1223100 Malus domestica HOM05D004862 ORTHO05D005841 2.7e-98 363.2 438 44.5
Prupe.6G329700 Prunus persica HOM05D004862 ORTHO05D005841 2.7e-98 363.2 439 44.6
Aa31LG2G6120 Aethionema arabicum HOM05D004862 ORTHO05D005841 3.6e-98 362.8 387 48.1
MBI06_g20970_MAGBIO Magnolia biondii HOM05D004862 ORTHO05D005841 3.6e-98 362.8 411 46.0
AL5G15180 Arabidopsis lyrata HOM05D004862 ORTHO05D005841 4.7e-98 362.5 388 48.2
Carub.0005s0438 Capsella rubella HOM05D004862 ORTHO05D005841 8.0e-98 361.7 388 48.2
PSO675G5038 Papaver somniferum HOM05D004862 ORTHO05D005841 8.0e-98 361.7 439 44.9
Cfa010154 Carpinus fangiana HOM05D004862 ORTHO05D005841 1.4e-97 360.9 386 47.2
Thhalv10004120m.g Eutrema salsugineum HOM05D004862 ORTHO05D005841 1.4e-97 360.9 387 47.8
PGSC0003DMG400017691 Solanum tuberosum HOM05D004862 ORTHO05D005841 3.0e-97 359.8 423 45.6
ATR1136G066 Amborella trichopoda HOM05D004862 ORTHO05D005841 3.9e-97 359.4 387 47.8
EL10Ac4g08938 Beta vulgaris HOM05D004862 ORTHO05D005841 3.9e-97 359.4 421 44.9
Sp2g15560 Schrenkiella parvula HOM05D004862 ORTHO05D005841 5.2e-97 359.0 387 48.1
PSO541G6054 Papaver somniferum HOM05D004862 ORTHO05D005841 6.7e-97 358.6 444 45.0
Lj4g0019477 Lotus japonicus HOM05D004862 ORTHO05D005841 1.5e-96 357.5 379 47.5
SHI16537 Sapria himalayana HOM05D004862 ORTHO05D005841 2.6e-96 356.7 379 49.1
A06p42030 Brassica napus HOM05D004862 ORTHO05D005841 5.7e-96 355.5 387 47.0
Lalb_Chr07g0189371 Lupinus albus HOM05D004862 ORTHO05D005841 5.7e-96 355.5 443 44.0
BolC2t11381H Brassica oleracea HOM05D004862 ORTHO05D005841 7.4e-96 355.1 445 43.1
C07p35450 Brassica napus HOM05D004862 ORTHO05D005841 9.7e-96 354.8 387 47.0
BolC7t44069H Brassica oleracea HOM05D004862 ORTHO05D005841 9.7e-96 354.8 387 47.0
BraA06t27120Z Brassica rapa HOM05D004862 ORTHO05D005841 9.7e-96 354.8 387 47.0
CARHR147430 Cardamine hirsuta HOM05D004862 ORTHO05D005841 1.3e-95 354.4 447 43.0
ClCG09G014610 Citrullus lanatus HOM05D004862 ORTHO05D005841 1.7e-95 354.0 380 47.6
BcaB07g30229 Brassica carinata HOM05D004862 ORTHO05D005841 2.2e-95 353.6 445 42.7
MELO3C012691.2 Cucumis melo HOM05D004862 ORTHO05D005841 2.8e-95 353.2 387 47.3
GSVIVG01029751001 Vitis vinifera HOM05D004862 ORTHO05D005841 6.3e-95 352.1 375 47.7
BraA02t08465Z Brassica rapa HOM05D004862 ORTHO05D005841 1.4e-94 350.9 445 42.7
CsaV3_7G022230 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.4e-94 350.9 387 46.8
Peaxi162Scf00003g03739 Petunia axillaris HOM05D004862 ORTHO05D005841 9.1e-94 348.2 365 47.9
Sed0027136 Sechium edule HOM05D004862 ORTHO05D005841 1.2e-93 347.8 387 46.3
Eucgr.G00660 Eucalyptus grandis HOM05D004862 ORTHO05D005841 2.9e-92 343.2 358 48.6
MCO05G740 Micromonas commoda HOM05D004862 ORTHO05D005841 3.8e-92 342.8 455 42.9
SalBow5G3806 Salvia bowleyana HOM05D004862 ORTHO05D005841 6.5e-92 342.0 518 39.4
BcaC03g17366 Brassica carinata HOM05D004862 ORTHO05D005841 8.5e-92 341.7 469 40.9
Sabra01G0160300 Salix brachista HOM05D004862 ORTHO05D005841 3.2e-91 339.7 478 40.8
QL01p020593 Quercus lobata HOM05D004862 ORTHO05D005841 3.6e-90 336.3 482 39.6
SalBow5G4932 Salvia bowleyana HOM05D004862 ORTHO05D005841 5.2e-89 332.4 543 37.6
vmacro01803 Vaccinium macrocarpon HOM05D004862 ORTHO05D005841 2.0e-88 330.5 460 40.2
A02p34570 Brassica napus HOM05D004862 ORTHO05D005841 3.4e-88 329.7 358 47.2
HPP92_004639 Vanilla planifolia HOM05D004862 ORTHO05D005841 3.7e-87 326.2 330 49.7
HPP92_004630 Vanilla planifolia HOM05D004862 ORTHO05D005841 1.8e-86 323.9 330 49.4
BcaNung06886 Brassica carinata HOM05D004862 ORTHO05D005841 3.8e-84 316.2 403 43.2
TAR116G0002 Trochodendron aralioides HOM05D004862 ORTHO05D005841 1.9e-83 313.9 327 49.2
C02p53070 Brassica napus HOM05D004862 ORTHO05D005841 3.2e-83 313.2 469 39.4
AUR62004780 Chenopodium quinoa HOM05D004862 ORTHO05D005841 3.0e-81 306.6 442 41.2
Ciclev10008412m.g Citrus clementina HOM05D004862 ORTHO05D005841 7.5e-80 302.0 378 43.7
Atru.chr6.1121 Acer truncatum HOM05D004862 ORTHO05D005841 7.0e-78 295.4 365 46.0
PRCOL_00003583 Prasinoderma coloniale HOM05D004862 ORTHO05D005841 5.0e-76 289.3 382 44.0
SEGI_00112 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 1.6e-74 284.3 353 44.5
TPR.G31479 Trifolium pratense HOM05D004862 ORTHO05D005841 1.6e-74 284.3 292 47.6
TAR628G0283 Trochodendron aralioides HOM05D004862 ORTHO05D005841 3.2e-70 270.0 257 53.7
Cpa.g.sc845.1 Carica papaya HOM05D004862 ORTHO05D005841 4.1e-70 269.6 314 47.5
Zm00001eb243830 Zea mays HOM05D004862 ORTHO05D005841 1.9e-67 260.8 310 46.5
FAN05G4337 Fragaria x ananassa HOM05D004862 ORTHO05D005841 5.6e-67 259.2 264 51.9
C02p53050 Brassica napus HOM05D004862 ORTHO05D005841 1.6e-66 257.7 329 45.3
BolC2t11366H Brassica oleracea HOM05D004862 ORTHO05D005841 2.3e-65 253.8 335 44.8
BcaC03g17340 Brassica carinata HOM05D004862 ORTHO05D005841 3.1e-65 253.4 365 41.4
CsaV3_7G014980 Cucumis sativus L. HOM05D004862 ORTHO05D005841 4.1e-62 243.0 258 46.5
C02p52870 Brassica napus HOM05D004862 ORTHO05D005841 7.5e-56 222.2 329 41.9
CsaV3_UNG189490 Cucumis sativus L. HOM05D004862 ORTHO05D005841 2.2e-55 220.7 232 47.0
unitig_26.g9584 Utricularia gibba HOM05D004862 ORTHO05D005841 1.7e-44 184.5 178 47.8
Cfa021801 Carpinus fangiana HOM05D004862 ORTHO05D005841 9.6e-43 178.7 394 30.5
CsaV3_7G015000 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.9e-38 164.5 169 50.3
CsaV3_UNG187480 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.9e-38 164.5 169 50.3
CsaV3_7G014960 Cucumis sativus L. HOM05D004862 ORTHO05D005841 3.0e-36 157.1 169 49.7
Ca_29817_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 4.8e-34 149.8 207 42.5
unitig_26.g9585 Utricularia gibba HOM05D004862 ORTHO05D005841 1.9e-30 137.9 142 50.7
Ca_25384_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 1.4e-25 121.7 183 40.4
Ca_31280_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 5.3e-25 119.8 107 56.1
CsaV3_UNG197500 Cucumis sativus L. HOM05D004862 ORTHO05D005841 4.9e-23 113.2 107 52.3
CsaV3_7G014970 Cucumis sativus L. HOM05D004862 ORTHO05D005841 2.7e-21 107.5 103 53.4
CsaV3_7G015010 Cucumis sativus L. HOM05D004862 ORTHO05D005841 6.0e-21 106.3 112 50.0
AagrBONN_evm.TU.Sc2ySwM_344.4621 Anthoceros agrestis HOM05D004862 ORTHO05D005841 5.3e-17 93.2 91 45.1
Potri.003G022650 Populus trichocarpa HOM05D004862 ORTHO05D005841 6.9e-17 92.8 72 56.9
BolC2t11379H Brassica oleracea HOM05D004862 ORTHO05D005841 4.9e-15 86.7 125 40.8
TAR628G0087 Trochodendron aralioides HOM05D004862 ORTHO05D005841 6.3e-10 69.7 68 44.1
CsaV3_7G014950 Cucumis sativus L. HOM05D004862 ORTHO05D005841 4.5e-08 63.5 65 38.5


User provided reference genes

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