Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre08.g358570 Chlamydomonas reinhardtii HOM05D043704 ORTHO05D141221 1.4e-241 839.3 474 100.0
Cre07.g340600 Chlamydomonas reinhardtii HOM05D043704 ORTHO05D143291 3.7e-64 250.0 457 40.3
Cre16.g688000 Chlamydomonas reinhardtii HOM05D001639 ORTHO05D003260 5.2e-10 70.1 193 30.1
Actinidia02005 Actinidia chinensis HOM05D000883 ORTHO05D008470 1.5e-09 68.6 202 27.2
CBR_g32177 Chara braunii HOM05D001639 ORTHO05D008274 2.0e-09 68.2 205 27.3
Actinidia14562 Actinidia chinensis HOM05D000883 ORTHO05D008470 2.6e-09 67.8 202 26.7
CBR_g40863 Chara braunii HOM05D001639 ORTHO05D026602 3.4e-09 67.4 205 28.3
Thecc.03G278800 Theobroma cacao HOM05D000883 ORTHO05D008470 4.4e-09 67.0 184 29.3
AUR62017201 Chenopodium quinoa HOM05D000883 ORTHO05D008470 5.8e-09 66.6 203 25.1
THA.LOC104816012 Tarenaya hassleriana HOM05D000883 ORTHO05D003260 7.5e-09 66.2 182 27.5
Mapoly0036s0019 Marchantia polymorpha HOM05D000883 ORTHO05D026602 2.9e-08 64.3 218 26.6
vmacro11334 Vaccinium macrocarpon HOM05D000883 ORTHO05D008470 6.4e-08 63.2 198 25.3
ATR0589G104 Amborella trichopoda HOM05D000177 ORTHO05D002612 8.3e-08 62.8 168 29.8
AUR62010681 Chenopodium quinoa HOM05D000883 ORTHO05D008470 8.3e-08 62.8 181 26.5
QL02p024608 Quercus lobata HOM05D001639 ORTHO05D008274 8.3e-08 62.8 192 24.0
Rhsim02G0231300 Rhododendron simsii HOM05D000883 ORTHO05D008470 8.3e-08 62.8 198 25.3
RcHm_v2.0_Chr7g0197691 Rosa chinensis HOM05D000883 ORTHO05D008470 1.1e-07 62.4 180 27.2
GSVIVG01019754001 Vitis vinifera HOM05D000883 ORTHO05D008470 1.1e-07 62.4 184 27.2
AagrBONN_evm.TU.Sc2ySwM_117.3407 Anthoceros agrestis HOM05D001639 ORTHO05D008660 1.4e-07 62.0 168 27.4
CsaV3_2G029660 Cucumis sativus L. HOM05D000177 ORTHO05D003091 1.4e-07 62.0 207 28.5
Duzib041G0382 Durio zibethinus HOM05D000177 ORTHO05D003091 1.4e-07 62.0 207 28.0
Pp3c8_19090 Physcomitrium patens HOM05D000883 ORTHO05D019624 1.4e-07 62.0 171 27.5
TWI12G0382 Tripterygium wilfordii HOM05D000177 ORTHO05D003091 1.4e-07 62.0 215 28.8
FvH4_5g02410 Fragaria vesca HOM05D000883 ORTHO05D008470 2.4e-07 61.2 180 26.7
FAN18G1393 Fragaria x ananassa HOM05D000883 ORTHO05D008470 2.4e-07 61.2 180 26.7
SalBow3G4170 Salvia bowleyana HOM05D000177 ORTHO05D003091 2.4e-07 61.2 204 27.9
Cc08_g14750 Coffea canephora HOM05D000883 ORTHO05D008470 3.2e-07 60.8 180 26.1
FAN08G2773 Fragaria x ananassa HOM05D000883 ORTHO05D008470 3.2e-07 60.8 180 26.7
MCO16G588 Micromonas commoda HOM05D000883 ORTHO05D008470 3.2e-07 60.8 182 26.9
Peaxi162Scf00041g01736 Petunia axillaris HOM05D000177 ORTHO05D003091 3.2e-07 60.8 207 28.0
Peaxi162Scf00119g00945 Petunia axillaris HOM05D000883 ORTHO05D008470 3.2e-07 60.8 184 25.5
Pp3c2_27940 Physcomitrium patens HOM05D000177 ORTHO05D003047 3.2e-07 60.8 215 26.0
PRCOL_00000819 Prasinoderma coloniale HOM05D000883 ORTHO05D002942 3.2e-07 60.8 253 27.3
SGA_v2.0_scaffold173G39186 Striga asiatica HOM05D000883 ORTHO05D008470 3.2e-07 60.8 180 28.9
PGR042G3209 Punica granatum HOM05D000883 ORTHO05D008470 4.1e-07 60.5 184 25.5
arahy.Tifrunner.gnm1.ann1.PIRC93 Arachis hypogaea HOM05D000177 ORTHO05D002612 5.4e-07 60.1 176 30.1
MSTRG.25608 Avicennia marina HOM05D000883 ORTHO05D008470 5.4e-07 60.1 180 27.8
COL.COLO4_16400 Corchorus olitorius HOM05D000177 ORTHO05D003091 5.4e-07 60.1 207 27.5
COL.COLO4_34463 Corchorus olitorius HOM05D000883 ORTHO05D008470 7.0e-07 59.7 139 30.2
Migut.A00763 Erythranthe guttata HOM05D000883 ORTHO05D008470 7.0e-07 59.7 183 26.8
Migut.N02897 Erythranthe guttata HOM05D000177 ORTHO05D003091 7.0e-07 59.7 204 27.0
MBI05_g19347_MAGBIO Magnolia biondii HOM05D000177 ORTHO05D003091 7.0e-07 59.7 202 25.2
MD16G1069100 Malus domestica HOM05D000406 ORTHO05D007930 7.0e-07 59.7 185 29.2
Pp3c18_13120 Physcomitrium patens HOM05D000883 ORTHO05D008470 7.0e-07 59.7 207 27.5
Thecc.01G115800 Theobroma cacao HOM05D000883 ORTHO05D003260 7.0e-07 59.7 209 25.4
Thecc.08G106900 Theobroma cacao HOM05D000177 ORTHO05D003091 7.0e-07 59.7 207 26.6
Aqoxy7G00323 Aquilegia oxysepala HOM05D000883 ORTHO05D008470 1.2e-06 58.9 175 28.0
FAN13G0852 Fragaria x ananassa HOM05D000883 ORTHO05D008470 1.2e-06 58.9 171 26.9
Sopen04g029310 Solanum pennellii HOM05D000177 ORTHO05D003091 1.2e-06 58.9 207 27.1
PGSC0003DMG400006405 Solanum tuberosum HOM05D000177 ORTHO05D003091 1.2e-06 58.9 207 27.1
vmacro21270 Vaccinium macrocarpon HOM05D000177 ORTHO05D003091 1.2e-06 58.9 207 27.5
Cpa.g.sc49.41 Carica papaya HOM05D001639 ORTHO05D008274 1.6e-06 58.5 192 25.0
Haze_11981 Corylus avellana HOM05D000406 ORTHO05D007930 1.6e-06 58.5 193 26.4
FAN04G0265 Fragaria x ananassa HOM05D000883 ORTHO05D008470 1.6e-06 58.5 180 25.6
Lsat_1_v5_gn_5_43700 Lactuca sativa HOM05D000177 ORTHO05D003091 1.6e-06 58.5 204 27.5
Phvul.006G110800 Phaseolus vulgaris HOM05D000177 ORTHO05D002612 1.6e-06 58.5 168 28.6
Phvul.010G111300 Phaseolus vulgaris HOM05D000177 ORTHO05D002612 1.6e-06 58.5 168 30.4
Solyc04g074130.3 Solanum lycopersicum HOM05D000177 ORTHO05D003091 1.6e-06 58.5 207 27.1
Lalb_Chr04g0261641 Lupinus albus HOM05D000177 ORTHO05D002612 2.1e-06 58.2 168 28.0
PGSC0003DMG400026833 Solanum tuberosum HOM05D000883 ORTHO05D003260 2.1e-06 58.2 182 27.5
HPP92_015170 Vanilla planifolia HOM05D000883 ORTHO05D008470 2.1e-06 58.2 195 25.1
Atru.chr9.2189 Acer truncatum HOM05D000883 ORTHO05D008470 2.7e-06 57.8 180 24.4
AL6G45880 Arabidopsis lyrata HOM05D000883 ORTHO05D008470 2.7e-06 57.8 188 25.0
ECA233G4152 Erigeron canadensis HOM05D000883 ORTHO05D008470 2.7e-06 57.8 199 26.6
FAN26G0233 Fragaria x ananassa HOM05D000177 ORTHO05D003091 2.7e-06 57.8 207 27.5
FAN28G1287 Fragaria x ananassa HOM05D000177 ORTHO05D003091 2.7e-06 57.8 207 27.5
Glyma.19G253900 Glycine max HOM05D000177 ORTHO05D002612 2.7e-06 57.8 169 29.6
Gorai.009G237100 Gossypium raimondii HOM05D000177 ORTHO05D003091 2.7e-06 57.8 207 26.1
Lalb_Chr04g0254511 Lupinus albus HOM05D000177 ORTHO05D002612 2.7e-06 57.8 172 29.1
MD15G1174900 Malus domestica HOM05D000177 ORTHO05D003047 2.7e-06 57.8 212 23.6
RcHm_v2.0_Chr2g0113451 Rosa chinensis HOM05D000177 ORTHO05D003091 2.7e-06 57.8 207 27.1
TWI14G0221 Tripterygium wilfordii HOM05D000177 ORTHO05D002612 2.7e-06 57.8 169 29.0
CAN.G774.41 Capsicum annuum HOM05D000883 ORTHO05D008470 3.5e-06 57.4 180 25.6
CBR_g32117 Chara braunii HOM05D000883 ORTHO05D008470 3.5e-06 57.4 208 25.5
ClCG08G006600 Citrullus lanatus HOM05D000883 ORTHO05D008274 3.5e-06 57.4 192 25.0
Glyma.03G256100 Glycine max HOM05D000177 ORTHO05D002612 3.5e-06 57.4 169 29.6
Glyma.07G058100 Glycine max HOM05D000177 ORTHO05D002612 3.5e-06 57.4 168 28.0
Pp3c12_10690 Physcomitrium patens HOM05D000883 ORTHO05D003260 3.5e-06 57.4 183 24.0
Pp3c21_5550 Physcomitrium patens HOM05D000883 ORTHO05D008470 3.5e-06 57.4 185 26.5
Potri.007G093300 Populus trichocarpa HOM05D000177 ORTHO05D003091 3.5e-06 57.4 205 26.8
Sed0012761 Sechium edule HOM05D000177 ORTHO05D003091 3.5e-06 57.4 207 27.1
TAR374G0271 Trochodendron aralioides HOM05D000883 ORTHO05D008470 3.5e-06 57.4 184 25.0
VMungo0251G1923 Vigna mungo HOM05D000883 ORTHO05D008470 3.5e-06 57.4 181 25.4
arahy.Tifrunner.gnm1.ann1.06LGCI Arachis hypogaea HOM05D000177 ORTHO05D002612 4.6e-06 57.0 168 28.0
arahy.Tifrunner.gnm1.ann1.7EB76Z Arachis hypogaea HOM05D000177 ORTHO05D002612 4.6e-06 57.0 168 28.0
MSTRG.24459 Avicennia marina HOM05D000177 ORTHO05D003091 4.6e-06 57.0 207 26.1
CiPaw.11G135300 Carya illinoinensis HOM05D000883 ORTHO05D008470 4.6e-06 57.0 195 24.6
Thhalv10018646m.g Eutrema salsugineum HOM05D000883 ORTHO05D008274 4.6e-06 57.0 192 24.5
Gohir.D05G229100 Gossypium hirsutum HOM05D000177 ORTHO05D003091 4.6e-06 57.0 200 26.0
Manes.01G060700 Manihot esculenta HOM05D000883 ORTHO05D008470 4.6e-06 57.0 184 27.2
PGSC0003DMG400012208 Solanum tuberosum HOM05D000883 ORTHO05D008470 4.6e-06 57.0 180 25.6
TWI59G1026 Tripterygium wilfordii HOM05D000177 ORTHO05D002612 4.6e-06 57.0 169 29.6
VMungo0331G1705 Vigna mungo HOM05D000177 ORTHO05D002612 4.6e-06 57.0 168 30.4
CANSAT21G1555 Cannabis sativa HOM05D000883 ORTHO05D008470 6.0e-06 56.6 180 26.1
Carub.0002s1966 Capsella rubella HOM05D001203 ORTHO05D001059 6.0e-06 56.6 200 28.5
CDE07G0986 Ceratophyllum demersum HOM05D000177 ORTHO05D003047 6.0e-06 56.6 218 22.9
FvH4_4g31020 Fragaria vesca HOM05D000406 ORTHO05D007930 6.0e-06 56.6 148 31.8
FAN12G1422 Fragaria x ananassa HOM05D000406 ORTHO05D007930 6.0e-06 56.6 148 31.8
Gohir.A05G226400 Gossypium hirsutum HOM05D000177 ORTHO05D003091 6.0e-06 56.6 207 26.1
Lsat_1_v5_gn_6_6541 Lactuca sativa HOM05D000883 ORTHO05D008470 6.0e-06 56.6 181 26.5
MD07G1145800 Malus domestica HOM05D000177 ORTHO05D002612 6.0e-06 56.6 169 27.2
PRCOL_00004167 Prasinoderma coloniale HOM05D000177 ORTHO05D004727 6.0e-06 56.6 202 27.2
Prupe.6G187500 Prunus persica HOM05D000177 ORTHO05D003091 6.0e-06 56.6 207 26.6
SEGI_17678 Sequoiadendron giganteum HOM05D000177 ORTHO05D003091 6.0e-06 56.6 200 26.0
BcaB05g23827 Brassica carinata HOM05D000883 ORTHO05D008470 7.8e-06 56.2 196 24.0
Cfa008952 Carpinus fangiana HOM05D000406 ORTHO05D007930 7.8e-06 56.2 193 25.9
Duzib084G0727 Durio zibethinus HOM05D000883 ORTHO05D008470 7.8e-06 56.2 180 26.1
FvH4_1g20840 Fragaria vesca HOM05D000177 ORTHO05D003091 7.8e-06 56.2 207 27.5
FAN08G1122 Fragaria x ananassa HOM05D000177 ORTHO05D002612 7.8e-06 56.2 175 28.6
FAN19G0952 Fragaria x ananassa HOM05D000177 ORTHO05D003091 7.8e-06 56.2 207 27.5
Glyma.05G208000 Glycine max HOM05D000883 ORTHO05D008470 7.8e-06 56.2 181 25.4
Lalb_Chr17g0342341 Lupinus albus HOM05D000177 ORTHO05D002612 7.8e-06 56.2 172 28.5
Pp3c7_15800 Physcomitrium patens HOM05D000177 ORTHO05D003047 7.8e-06 56.2 203 25.6
RcHm_v2.0_Chr7g0223901 Rosa chinensis HOM05D000406 ORTHO05D007930 7.8e-06 56.2 190 25.8
SEGI_28371 Sequoiadendron giganteum HOM05D000177 ORTHO05D002612 7.8e-06 56.2 174 27.6
Solyc08g081070.3 Solanum lycopersicum HOM05D000883 ORTHO05D008470 7.8e-06 56.2 180 25.6
TAR374G0784 Trochodendron aralioides HOM05D000883 ORTHO05D002942 7.8e-06 56.2 204 24.5


User provided reference genes

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