Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre07.g356750 Chlamydomonas reinhardtii HOM05D001323 ORTHO05D139504 3.8e-204 715.3 576 100.0
Pp3c15_15520 Physcomitrium patens HOM05D001323 ORTHO05D001223 6.8e-12 76.6 285 25.3
CBR_g12615 Chara braunii HOM05D001323 ORTHO05D001223 1.2e-11 75.9 271 25.8
MCO06G254 Micromonas commoda HOM05D001323 ORTHO05D001223 9.8e-11 72.8 315 25.4
AUR62004759 Chenopodium quinoa HOM05D001323 ORTHO05D001223 3.7e-10 70.9 283 23.7
Pp3c1_36000 Physcomitrium patens HOM05D001323 ORTHO05D001223 3.7e-10 70.9 100 39.0
AUR62037494 Chenopodium quinoa HOM05D001323 ORTHO05D001223 4.9e-10 70.5 283 23.7
Zm00001eb001490 Zea mays HOM05D001323 ORTHO05D001223 2.4e-09 68.2 290 23.1
vmacro20464 Vaccinium macrocarpon HOM05D001323 ORTHO05D001223 3.1e-09 67.8 283 23.7
AagrBONN_evm.TU.Sc2ySwM_117.329 Anthoceros agrestis HOM05D001323 ORTHO05D001223 4.1e-09 67.4 85 41.2
vmacro03354 Vaccinium macrocarpon HOM05D001323 ORTHO05D001223 4.1e-09 67.4 299 24.7
EL10Ac4g08912 Beta vulgaris HOM05D001323 ORTHO05D001223 9.2e-09 66.2 288 22.6
Cre06.g278300 Chlamydomonas reinhardtii HOM05D001323 ORTHO05D001223 2.7e-08 64.7 80 41.2
Pp3c2_9840 Physcomitrium patens HOM05D001323 ORTHO05D001223 4.5e-08 63.9 98 37.8
Solyc05g054800.3 Solanum lycopersicum HOM05D001323 ORTHO05D001223 7.7e-08 63.2 281 23.1
Os03g0120100 Oryza sativa ssp. japonica HOM05D001323 ORTHO05D001223 1.3e-07 62.4 283 22.6
GSVIVG01036722001 Vitis vinifera HOM05D001323 ORTHO05D001223 1.3e-07 62.4 84 38.1
CBR_g6595 Chara braunii HOM05D001323 ORTHO05D001223 2.3e-07 61.6 90 36.7
AagrBONN_evm.TU.Sc2ySwM_117.712 Anthoceros agrestis HOM05D001323 ORTHO05D001223 2.9e-07 61.2 82 39.0
Lsat_1_v5_gn_3_16240 Lactuca sativa HOM05D001323 ORTHO05D001223 2.9e-07 61.2 83 39.8
THA.LOC104812867 Tarenaya hassleriana HOM05D001323 ORTHO05D001223 2.9e-07 61.2 285 22.8
CBR_g48129 Chara braunii HOM05D001323 ORTHO05D001223 3.8e-07 60.8 89 32.6
Pp3c15_18239 Physcomitrium patens HOM05D001323 ORTHO05D001223 3.8e-07 60.8 92 35.9
QL04p093752 Quercus lobata HOM05D001323 ORTHO05D001223 3.8e-07 60.8 85 37.6
Rhsim10G0185500 Rhododendron simsii HOM05D001323 ORTHO05D001223 3.8e-07 60.8 86 37.2
MD09G1280100 Malus domestica HOM05D001323 ORTHO05D001223 5.0e-07 60.5 94 35.1
Ah.06g191530 Amaranthus hybridus HOM05D001323 ORTHO05D001223 6.6e-07 60.1 85 36.5
Ciclev10005291m.g Citrus clementina HOM05D001323 ORTHO05D001223 6.6e-07 60.1 109 35.8
Manes.02G081400 Manihot esculenta HOM05D001323 ORTHO05D001223 8.6e-07 59.7 84 35.7
Nitab4.5_0000029g0170 Nicotiana tabacum HOM05D001323 ORTHO05D001223 8.6e-07 59.7 84 39.3
Sed0015412 Sechium edule HOM05D001323 ORTHO05D001223 8.6e-07 59.7 84 36.9
Ah.04g162940 Amaranthus hybridus HOM05D000356 ORTHO05D000265 1.1e-06 59.3 91 35.2
Hma1.2p1_0158F.1_g069610 Hydrangea macrophylla HOM05D001323 ORTHO05D001223 1.1e-06 59.3 84 36.9
SalBow4G0001 Salvia bowleyana HOM05D001323 ORTHO05D001223 1.5e-06 58.9 84 36.9
SGA_v2.0_scaffold186G40179 Striga asiatica HOM05D001323 ORTHO05D001223 1.5e-06 58.9 85 36.5
TAR624G1096 Trochodendron aralioides HOM05D001323 ORTHO05D001223 1.5e-06 58.9 85 38.8
MSTRG.7091 Avicennia marina HOM05D001323 ORTHO05D001223 1.9e-06 58.5 86 37.2
Eucgr.G00564 Eucalyptus grandis HOM05D001323 ORTHO05D001223 1.9e-06 58.5 84 34.5
MD17G1286800 Malus domestica HOM05D001323 ORTHO05D001223 1.9e-06 58.5 94 33.0
unitig_748.g7611 Utricularia gibba HOM05D001323 ORTHO05D001223 1.9e-06 58.5 87 36.8
Atru.chr12.1703 Acer truncatum HOM05D001323 ORTHO05D001223 2.5e-06 58.2 84 36.9
PRCOL_00000284 Prasinoderma coloniale HOM05D001323 ORTHO05D001223 2.5e-06 58.2 294 24.5
Zm00001eb320300 Zea mays HOM05D001323 ORTHO05D001223 2.5e-06 58.2 87 35.6
Os05g0529900 Oryza sativa ssp. japonica HOM05D001323 ORTHO05D001223 3.3e-06 57.8 92 32.6
Sabra10G0133800 Salix brachista HOM05D001323 ORTHO05D001223 3.3e-06 57.8 85 35.3
TWI38G0475 Tripterygium wilfordii HOM05D001323 ORTHO05D001223 3.3e-06 57.8 84 35.7
CDE11G0400 Ceratophyllum demersum HOM05D001323 ORTHO05D001223 4.3e-06 57.4 93 35.5
CsaV3_3G018000 Cucumis sativus L. HOM05D001323 ORTHO05D001223 4.3e-06 57.4 84 36.9
Nn4g24747 Nelumbo nucifera HOM05D001323 ORTHO05D001223 4.3e-06 57.4 82 35.4
Potri.010G173900 Populus trichocarpa HOM05D001323 ORTHO05D001223 4.3e-06 57.4 94 36.2
THA.LOC104816993 Tarenaya hassleriana HOM05D001323 ORTHO05D001223 4.3e-06 57.4 84 36.9
Eucgr.G00565 Eucalyptus grandis HOM05D001323 ORTHO05D001223 5.6e-06 57.0 92 32.6
Lsat_1_v5_gn_3_67441 Lactuca sativa HOM05D001323 ORTHO05D001223 5.6e-06 57.0 86 36.0
PRCOL_00001843 Prasinoderma coloniale HOM05D001323 ORTHO05D333151 5.6e-06 57.0 279 23.7
Actinidia00847 Actinidia chinensis HOM05D001323 ORTHO05D001223 7.3e-06 56.6 83 33.7
Eucgr.F04470 Eucalyptus grandis HOM05D001323 ORTHO05D001223 7.3e-06 56.6 84 34.5
HanXRQChr04g0105561 Helianthus annuus HOM05D001323 ORTHO05D001223 7.3e-06 56.6 86 34.9
MBI18_g01505_MAGBIO Magnolia biondii HOM05D001323 ORTHO05D001223 7.3e-06 56.6 105 32.4
Peaxi162Scf00452g00223 Petunia axillaris HOM05D001323 ORTHO05D001223 7.3e-06 56.6 84 35.7
AL3G24420 Arabidopsis lyrata HOM05D001323 ORTHO05D001223 9.5e-06 56.2 96 35.4
BcaC01g04031 Brassica carinata HOM05D001323 ORTHO05D001223 9.5e-06 56.2 102 32.4
C03p45850 Brassica napus HOM05D001323 ORTHO05D001223 9.5e-06 56.2 102 32.4
BolC3t16860H Brassica oleracea HOM05D001323 ORTHO05D001223 9.5e-06 56.2 102 32.4
Haze_14326 Corylus avellana HOM05D001323 ORTHO05D001223 9.5e-06 56.2 84 36.9
SEGI_35077 Sequoiadendron giganteum HOM05D001323 ORTHO05D001223 9.5e-06 56.2 82 36.6


User provided reference genes

Program Settings