Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre07.g355300 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 0.0e+00 1152.1 707 100.0
Cre03.g199600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 3.0e-62 244.2 224 53.1
Pp3c11_9440 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.1e-43 182.6 355 35.2
Pp3c1_3670 Physcomitrium patens HOM05D003942 ORTHO05D004527 9.1e-43 179.5 303 38.6
Cre06.g277650 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.0e-42 178.3 256 40.6
Pp3c1_34600 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.6e-42 177.9 304 38.5
Mapoly0009s0131 Marchantia polymorpha HOM05D003942 ORTHO05D004527 1.7e-41 175.3 352 32.1
Pp3c6_24250 Physcomitrium patens HOM05D003942 ORTHO05D004527 9.4e-40 169.5 302 36.1
Cre06.g261750 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 4.7e-39 167.2 304 34.9
Pp3c1_34560 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.7e-39 167.2 292 36.6
Cre16.g663450 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 5.2e-38 163.7 309 33.3
Cre11.g474700 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 8.8e-38 162.9 303 34.7
PRCOL_00004040 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 8.8e-38 162.9 307 35.8
Pp3c3_22870 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.2e-37 162.5 309 32.4
Pp3c4_15850 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.2e-37 162.5 310 34.2
Cre01.g038100 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.6e-37 161.4 335 34.6
Cre16.g662600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 3.4e-37 161.0 292 34.2
Cre16.g663400 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 7.5e-37 159.8 292 33.9
PRCOL_00006054 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 2.0e-34 151.8 249 36.5
Pp3c14_6660 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.7e-34 151.4 265 37.4
AagrBONN_evm.TU.Sc2ySwM_344.3805 Anthoceros agrestis HOM05D003942 ORTHO05D004527 4.5e-34 150.6 316 30.7
Prupe.2G168100 Prunus persica HOM05D003942 ORTHO05D004527 4.5e-34 150.6 311 29.6
AagrBONN_evm.TU.Sc2ySwM_228.958 Anthoceros agrestis HOM05D003942 ORTHO05D004527 5.9e-34 150.2 302 32.1
CBR_g44610 Chara braunii HOM05D000505 ORTHO05D000301 5.9e-34 150.2 309 33.3
AUR62022550 Chenopodium quinoa HOM05D003942 ORTHO05D004527 1.3e-33 149.1 311 30.2
CiPaw.01G059900 Carya illinoinensis HOM05D003942 ORTHO05D004527 2.9e-33 147.9 312 30.8
SMO364G0338 Selaginella moellendorffii HOM05D003942 ORTHO05D004527 2.9e-33 147.9 293 32.1
AUR62004344 Chenopodium quinoa HOM05D003942 ORTHO05D004527 3.8e-33 147.5 311 30.2
AagrBONN_evm.TU.Sc2ySwM_362.1957 Anthoceros agrestis HOM05D003942 ORTHO05D004527 5.0e-33 147.1 359 31.5
Lj3g0006137 Lotus japonicus HOM05D003942 ORTHO05D004527 8.5e-33 146.4 297 29.6
MD07G1139000 Malus domestica HOM05D003942 ORTHO05D004527 8.5e-33 146.4 298 30.9
Mapoly0071s0037 Marchantia polymorpha HOM05D003942 ORTHO05D004527 1.9e-32 145.2 290 32.4
MD01G1057600 Malus domestica HOM05D003942 ORTHO05D004527 2.5e-32 144.8 298 30.5
QL08p049021 Quercus lobata HOM05D003942 ORTHO05D004527 3.2e-32 144.4 314 30.3
FAN03G2475 Fragaria x ananassa HOM05D003942 ORTHO05D004527 9.4e-32 142.9 311 29.9
HanXRQChr16g0522811 Helianthus annuus HOM05D003942 ORTHO05D004527 9.4e-32 142.9 334 30.2
MBI18_g25515_MAGBIO Magnolia biondii HOM05D003942 ORTHO05D004527 9.4e-32 142.9 242 34.7
FAN10G4090 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.2e-31 142.5 361 28.0
TAR629G1832 Trochodendron aralioides HOM05D003942 ORTHO05D004527 1.2e-31 142.5 300 30.7
HanXRQChr13g0426521 Helianthus annuus HOM05D003942 ORTHO05D004527 1.6e-31 142.1 309 30.1
Lalb_Chr03g0038211 Lupinus albus HOM05D003942 ORTHO05D004527 1.6e-31 142.1 260 32.3
Lalb_Chr04g0256871 Lupinus albus HOM05D003942 ORTHO05D004527 1.6e-31 142.1 248 31.9
Rhsim07G0016400 Rhododendron simsii HOM05D003942 ORTHO05D004527 1.6e-31 142.1 315 29.2
SEGI_25793 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 1.6e-31 142.1 316 29.7
GSVIVG01026895001 Vitis vinifera HOM05D003942 ORTHO05D004527 2.1e-31 141.7 309 29.8
Cfa003938 Carpinus fangiana HOM05D003942 ORTHO05D004527 2.7e-31 141.4 320 29.4
FAN01G0250 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.7e-31 141.4 311 29.6
SalBow5G2271 Salvia bowleyana HOM05D003942 ORTHO05D004527 2.7e-31 141.4 337 29.1
VMungo0331G0006 Vigna mungo HOM05D003942 ORTHO05D004527 2.7e-31 141.4 303 29.7
Ah.05g180690 Amaranthus hybridus HOM05D003942 ORTHO05D004527 3.6e-31 141.0 290 30.7
CANSAT56G2580 Cannabis sativa HOM05D003942 ORTHO05D004527 4.7e-31 140.6 310 30.0
Hund27285 Selenicereus undatus HOM05D003942 ORTHO05D004527 4.7e-31 140.6 313 30.7
Actinidia10022 Actinidia chinensis HOM05D003942 ORTHO05D004527 8.0e-31 139.8 309 29.8
Oeu020562.1 Olea europaea HOM05D003942 ORTHO05D004527 8.0e-31 139.8 311 28.6
PGR042G2566 Punica granatum HOM05D003942 ORTHO05D004527 8.0e-31 139.8 298 29.9
Migut.N01440 Erythranthe guttata HOM05D003942 ORTHO05D004527 1.0e-30 139.4 310 29.0
Eucgr.E00157 Eucalyptus grandis HOM05D003942 ORTHO05D004527 1.0e-30 139.4 310 29.0
Lsat_1_v5_gn_3_137060 Lactuca sativa HOM05D003942 ORTHO05D004527 1.0e-30 139.4 307 29.6
RcHm_v2.0_Chr1g0355071 Rosa chinensis HOM05D003942 ORTHO05D004527 1.0e-30 139.4 311 29.3
DCAR_015969 Daucus carota HOM05D003942 ORTHO05D004527 1.8e-30 138.7 238 32.8
Gohir.A11G088200 Gossypium hirsutum HOM05D003942 ORTHO05D004527 2.3e-30 138.3 313 29.4
Gorai.007G098800 Gossypium raimondii HOM05D003942 ORTHO05D004527 2.3e-30 138.3 313 29.1
unitig_8.g3394 Utricularia gibba HOM05D003942 ORTHO05D004527 2.3e-30 138.3 289 30.8
BraA09t40766Z Brassica rapa HOM05D003942 ORTHO05D004527 3.0e-30 137.9 305 29.2
CiPaw.02G030000 Carya illinoinensis HOM05D003942 ORTHO05D004527 3.0e-30 137.9 316 29.1
Dinv32469 Davidia involucrata HOM05D003942 ORTHO05D004527 3.0e-30 137.9 310 28.7
FvH4_7g14170 Fragaria vesca HOM05D003942 ORTHO05D004527 3.0e-30 137.9 311 28.9
FAN06G2309 Fragaria x ananassa HOM05D003942 ORTHO05D004527 3.0e-30 137.9 311 28.9
Lsat_1_v5_gn_4_36221 Lactuca sativa HOM05D003942 ORTHO05D004527 3.0e-30 137.9 252 31.7
C08p36210 Brassica napus HOM05D003942 ORTHO05D004527 4.0e-30 137.5 305 29.2
BolC8t51203H Brassica oleracea HOM05D003942 ORTHO05D004527 4.0e-30 137.5 305 29.2
COL.COLO4_12700 Corchorus olitorius HOM05D003942 ORTHO05D004527 4.0e-30 137.5 313 29.1
Glyma.03G010800 Glycine max HOM05D003942 ORTHO05D004527 4.0e-30 137.5 299 29.8
Potri.014G082900 Populus trichocarpa HOM05D003942 ORTHO05D004527 5.2e-30 137.1 307 28.3
Sabra14G0060100 Salix brachista HOM05D003942 ORTHO05D004527 5.2e-30 137.1 328 27.7
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 6.8e-30 136.7 249 32.1
SGA_v2.0_scaffold43G16422 Striga asiatica HOM05D003942 ORTHO05D004527 6.8e-30 136.7 308 28.6
TAR375G0209 Trochodendron aralioides HOM05D003942 ORTHO05D004527 6.8e-30 136.7 309 28.5
Aa31LG10G15570 Aethionema arabicum HOM05D003942 ORTHO05D004527 8.8e-30 136.3 299 29.4
Ca_23643_v3 Cicer arietinum L. HOM05D003942 ORTHO05D004527 8.8e-30 136.3 299 29.1
Glyma.07G071900 Glycine max HOM05D003942 ORTHO05D004527 8.8e-30 136.3 300 29.7
arahy.Tifrunner.gnm1.ann1.Q5YAPI Arachis hypogaea HOM05D003942 ORTHO05D004527 1.2e-29 136.0 324 29.3
A09p53400 Brassica napus HOM05D003942 ORTHO05D004527 1.2e-29 136.0 305 29.2
Manes.05G036000 Manihot esculenta HOM05D003942 ORTHO05D004527 1.2e-29 136.0 310 29.0
CDE09G0298 Ceratophyllum demersum HOM05D003942 ORTHO05D004527 1.5e-29 135.6 307 27.7
ECA240G2096 Erigeron canadensis HOM05D003942 ORTHO05D004527 1.5e-29 135.6 308 29.5
Medtr8g031000 Medicago truncatula HOM05D003942 ORTHO05D004527 2.0e-29 135.2 299 27.1
Phvul.010G097300 Phaseolus vulgaris HOM05D003942 ORTHO05D004527 2.0e-29 135.2 297 28.6
Os03g0106000 Oryza sativa ssp. japonica HOM05D003942 ORTHO05D004527 2.6e-29 134.8 334 25.7
Thecc.01G360500 Theobroma cacao HOM05D003942 ORTHO05D004527 2.6e-29 134.8 312 29.2
TPR.G15979 Trifolium pratense HOM05D003942 ORTHO05D004527 2.6e-29 134.8 295 28.5
BcaC09g52244 Brassica carinata HOM05D003942 ORTHO05D004527 3.4e-29 134.4 327 27.8
FAN06G3470 Fragaria x ananassa HOM05D003942 ORTHO05D004527 3.4e-29 134.4 311 28.6
Aa31LG1G27300 Aethionema arabicum HOM05D003942 ORTHO05D004527 4.4e-29 134.0 311 28.6
arahy.Tifrunner.gnm1.ann1.2H0UDK Arachis hypogaea HOM05D003942 ORTHO05D004527 4.4e-29 134.0 324 29.0
Pp3c2_13700 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.4e-29 134.0 309 32.7
CSS0049620 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 5.7e-29 133.7 266 31.6
Duzib133G0298 Durio zibethinus HOM05D003942 ORTHO05D004527 7.5e-29 133.3 312 28.8
Nitab4.5_0001702g0090 Nicotiana tabacum HOM05D003942 ORTHO05D004527 7.5e-29 133.3 309 28.2
Psat4g154400 Pisum sativum HOM05D003942 ORTHO05D004527 7.5e-29 133.3 313 27.5
Sp5g02060 Schrenkiella parvula HOM05D003942 ORTHO05D004527 7.5e-29 133.3 299 29.1
CSS0041241 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 9.8e-29 132.9 266 31.6
Carub.0005s2799 Capsella rubella HOM05D003942 ORTHO05D004527 9.8e-29 132.9 311 27.7
AL5G43590 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 1.3e-28 132.5 311 27.7
BcaC07g40631 Brassica carinata HOM05D003942 ORTHO05D004527 1.3e-28 132.5 299 29.4
A04p01160 Brassica napus HOM05D003942 ORTHO05D004527 1.3e-28 132.5 299 29.1
BraA04t15833Z Brassica rapa HOM05D003942 ORTHO05D004527 1.3e-28 132.5 299 29.1
THA.LOC104817290 Tarenaya hassleriana HOM05D003942 ORTHO05D004527 1.3e-28 132.5 312 30.1
PGSC0003DMG400021644 Solanum tuberosum HOM05D003942 ORTHO05D004527 1.7e-28 132.1 265 30.6
C04p31390 Brassica napus HOM05D003942 ORTHO05D004527 2.2e-28 131.7 299 29.1
BolC4t24688H Brassica oleracea HOM05D003942 ORTHO05D004527 2.2e-28 131.7 299 29.1
Cc02_g37870 Coffea canephora HOM05D003942 ORTHO05D004527 2.2e-28 131.7 311 28.3
Nitab4.5_0008050g0040 Nicotiana tabacum HOM05D003942 ORTHO05D004527 2.2e-28 131.7 309 27.5
Atru.chr5.464 Acer truncatum HOM05D003942 ORTHO05D004527 3.7e-28 131.0 300 28.0
Cpa.g.sc18.243 Carica papaya HOM05D003942 ORTHO05D004527 3.7e-28 131.0 312 29.2
HPP92_006558 Vanilla planifolia HOM05D003942 ORTHO05D004527 3.7e-28 131.0 248 30.2
Haze_15488 Corylus avellana HOM05D003942 ORTHO05D004527 6.3e-28 130.2 299 28.4
Solyc05g049900.3 Solanum lycopersicum HOM05D003942 ORTHO05D004527 6.3e-28 130.2 326 27.9
Sopen05g028240 Solanum pennellii HOM05D003942 ORTHO05D004527 6.3e-28 130.2 326 27.9
Thhalv10006010m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 8.3e-28 129.8 299 28.8
Zm00001eb000510 Zea mays HOM05D003942 ORTHO05D004527 1.1e-27 129.4 336 28.0
CAN.G399.13 Capsicum annuum HOM05D003942 ORTHO05D004527 1.4e-27 129.0 237 30.0
SEGI_35716 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 4.1e-27 127.5 335 27.8
TWI23G1005 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 4.1e-27 127.5 298 30.5
CARHR141140 Cardamine hirsuta HOM05D003942 ORTHO05D004527 5.4e-27 127.1 298 28.5
TWI59G0555 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 5.4e-27 127.1 310 29.7
BcaC02g07065 Brassica carinata HOM05D003942 ORTHO05D004527 7.0e-27 126.7 315 27.3
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 7.0e-27 126.7 249 30.1
Carub.0004s2857 Capsella rubella HOM05D003942 ORTHO05D004527 9.1e-27 126.3 300 29.0
BcaC02g10219 Brassica carinata HOM05D003942 ORTHO05D004527 1.6e-26 125.6 297 28.6
Sp4g27940 Schrenkiella parvula HOM05D003942 ORTHO05D004527 1.6e-26 125.6 299 27.1
Thhalv10001467m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 2.0e-26 125.2 298 27.9
Peaxi162Scf00191g01422 Petunia axillaris HOM05D003942 ORTHO05D004527 2.7e-26 124.8 310 26.1
MSTRG.4859 Avicennia marina HOM05D003942 ORTHO05D004527 4.5e-26 124.0 295 28.1
BraA04t18872Z Brassica rapa HOM05D003942 ORTHO05D004527 7.7e-26 123.2 301 27.6
Ciclev10020374m.g Citrus clementina HOM05D003942 ORTHO05D004527 1.0e-25 122.9 322 27.6
Aqoxy5G04009 Aquilegia oxysepala HOM05D003942 ORTHO05D004527 1.7e-25 122.1 312 27.2
AL4G45080 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 1.7e-25 122.1 289 28.0
BolC4t28689H Brassica oleracea HOM05D003942 ORTHO05D004527 3.8e-25 120.9 301 26.6
C04p71910 Brassica napus HOM05D003942 ORTHO05D004527 6.6e-25 120.2 301 26.6
Lj9A582T85 Lonicera japonica HOM05D003942 ORTHO05D004527 1.9e-24 118.6 276 28.3
A04p34110 Brassica napus HOM05D003942 ORTHO05D004527 3.3e-24 117.9 301 27.2
PRCOL_00005764 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.2e-23 115.9 303 30.7
Sc23g0002980 Simmondsia chinensis HOM05D003942 ORTHO05D004527 1.6e-23 115.5 275 29.5
PRCOL_00003097 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 4.7e-23 114.0 322 29.2
MCO09G357 Micromonas commoda HOM05D003942 ORTHO05D004527 2.3e-22 111.7 357 28.0
CBR_g772 Chara braunii HOM05D003942 ORTHO05D004527 5.2e-22 110.5 310 27.4
PRCOL_00004398 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.3e-20 105.9 239 32.6
MCO01G007 Micromonas commoda HOM05D003942 ORTHO05D004527 4.1e-19 100.9 242 31.4
MCO01G232 Micromonas commoda HOM05D003942 ORTHO05D004527 5.4e-19 100.5 317 29.7
HPP92_011356 Vanilla planifolia HOM05D003942 ORTHO05D004527 2.0e-18 98.6 161 29.2
AT2G45870 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 5.9e-18 97.1 273 25.3
AagrBONN_evm.TU.Sc2ySwM_228.2628 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.7e-17 95.5 153 32.7
PRCOL_00003548 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 3.3e-16 91.3 225 30.2
CBR_g38187 Chara braunii HOM05D003942 ORTHO05D004527 2.1e-15 88.6 200 32.5
Cre03.g199652 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D144524 1.7e-12 79.0 83 45.8
Pp3c11_6680 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.9e-12 78.2 89 47.2
Pp3c6_17920 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.4e-11 75.9 198 31.3
Duzib138G1448 Durio zibethinus HOM05D003942 ORTHO05D004527 2.4e-11 75.1 312 23.1
ATR0680G085 Amborella trichopoda HOM05D003942 ORTHO05D004527 4.1e-11 74.3 208 28.8
AT3G61320 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 3.5e-10 71.2 207 25.6
Gohir.D11G092500 Gossypium hirsutum HOM05D003942 ORTHO05D004527 3.0e-09 68.2 199 26.6
Nn1g01512 Nelumbo nucifera HOM05D003942 ORTHO05D004527 5.0e-09 67.4 206 25.7
MCO13G261 Micromonas commoda HOM05D037687 ORTHO05D267800 3.3e-08 64.7 279 24.4
MD01G1202300 Malus domestica HOM05D003942 ORTHO05D004527 1.2e-07 62.8 189 25.4


User provided reference genes

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