Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre07.g350750 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 4.5e-233 810.8 395 100.0
Cre03.g172500 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 3.3e-103 379.4 383 50.7
AagrBONN_evm.TU.Sc2ySwM_362.2521 Anthoceros agrestis HOM05D005176 ORTHO05D006482 2.2e-99 366.7 353 55.8
Mapoly0003s0157 Marchantia polymorpha HOM05D005176 ORTHO05D006482 8.5e-99 364.8 353 54.4
Pp3c27_6780 Physcomitrium patens HOM05D005176 ORTHO05D006482 2.5e-98 363.2 353 53.8
SMO147G0375 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 2.2e-86 323.6 242 64.9
MCO02G403 Micromonas commoda HOM05D005176 ORTHO05D006482 3.0e-75 286.6 360 45.6
PRCOL_00006497 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 3.6e-65 253.1 201 59.2
Rhsim13G0148600 Rhododendron simsii HOM05D005176 ORTHO05D006482 5.2e-64 249.2 224 54.9
FvH4_3g01250 Fragaria vesca HOM05D005176 ORTHO05D006482 8.9e-64 248.4 210 56.7
Eucgr.E03960 Eucalyptus grandis HOM05D005176 ORTHO05D006482 5.8e-63 245.7 260 50.0
CANSAT56G2407 Cannabis sativa HOM05D005176 ORTHO05D006482 7.5e-63 245.4 232 52.6
Prupe.4G013400 Prunus persica HOM05D005176 ORTHO05D006482 9.9e-63 245.0 220 55.0
Ciclev10015546m.g Citrus clementina HOM05D005176 ORTHO05D006482 1.3e-62 244.6 195 57.9
CAN.G1186.9 Capsicum annuum HOM05D005176 ORTHO05D006482 1.7e-62 244.2 218 55.0
MD10G1328600 Malus domestica HOM05D005176 ORTHO05D006482 1.7e-62 244.2 238 51.3
Dinv20117 Davidia involucrata HOM05D005176 ORTHO05D006482 3.7e-62 243.0 225 54.2
CSS0003829 Camellia sinensis var. sinensis HOM05D005176 ORTHO05D006482 4.9e-62 242.7 224 53.6
unitig_748.g7945 Utricularia gibba HOM05D005176 ORTHO05D006482 4.9e-62 242.7 210 55.2
Phvul.006G144800 Phaseolus vulgaris HOM05D005176 ORTHO05D006482 8.3e-62 241.9 195 58.5
Solyc11g011990.2 Solanum lycopersicum HOM05D005176 ORTHO05D006482 8.3e-62 241.9 220 55.0
Manes.16G002000 Manihot esculenta HOM05D005176 ORTHO05D006482 1.1e-61 241.5 210 56.7
Sopen11g006800 Solanum pennellii HOM05D005176 ORTHO05D006482 1.4e-61 241.1 218 55.5
AUR62012769 Chenopodium quinoa HOM05D005176 ORTHO05D006482 1.9e-61 240.7 195 58.5
RcHm_v2.0_Chr5g0001781 Rosa chinensis HOM05D005176 ORTHO05D006482 2.4e-61 240.4 210 55.2
CARHR229150 Cardamine hirsuta HOM05D005176 ORTHO05D006482 3.2e-61 240.0 242 50.0
PGSC0003DMG400013335 Solanum tuberosum HOM05D005176 ORTHO05D006482 3.2e-61 240.0 220 54.5
Aqoxy1G04164 Aquilegia oxysepala HOM05D005176 ORTHO05D006482 4.1e-61 239.6 234 50.4
Migut.M01360 Erythranthe guttata HOM05D005176 ORTHO05D006482 4.1e-61 239.6 195 57.4
VMungo0540G1825 Vigna mungo HOM05D005176 ORTHO05D006482 4.1e-61 239.6 195 57.4
Hma1.2p1_0660F.1_g197450 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 5.4e-61 239.2 224 53.6
Oeu002752.3 Olea europaea HOM05D005176 ORTHO05D006482 5.4e-61 239.2 195 56.9
Sabra11G0011400 Salix brachista HOM05D005176 ORTHO05D006482 5.4e-61 239.2 221 54.3
Sabra11G0013200 Salix brachista HOM05D005176 ORTHO05D006482 5.4e-61 239.2 221 54.3
Actinidia26877 Actinidia chinensis HOM05D005176 ORTHO05D006482 7.1e-61 238.8 222 54.5
arahy.Tifrunner.gnm1.ann1.8PRB68 Arachis hypogaea HOM05D005176 ORTHO05D006482 7.1e-61 238.8 195 58.5
arahy.Tifrunner.gnm1.ann1.E5J967 Arachis hypogaea HOM05D005176 ORTHO05D006482 7.1e-61 238.8 195 58.5
Carub.0007s1906 Capsella rubella HOM05D005176 ORTHO05D006482 7.1e-61 238.8 242 49.2
Lj1A1237T47 Lonicera japonica HOM05D005176 ORTHO05D006482 7.1e-61 238.8 195 56.9
Gorai.009G182200 Gossypium raimondii HOM05D005176 ORTHO05D006482 9.2e-61 238.4 239 50.6
AT4G22260 Arabidopsis thaliana HOM05D005176 ORTHO05D006482 1.2e-60 238.0 232 51.3
Gohir.D05G176800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 1.2e-60 238.0 233 51.5
CiPaw.09G100100 Carya illinoinensis HOM05D005176 ORTHO05D006482 1.6e-60 237.7 210 55.2
Cpa.g.sc152.62 Carica papaya HOM05D005176 ORTHO05D006482 2.1e-60 237.3 195 57.4
COL.COLO4_31852 Corchorus olitorius HOM05D005176 ORTHO05D006482 2.1e-60 237.3 224 53.6
Sed0020812 Sechium edule HOM05D005176 ORTHO05D006482 2.1e-60 237.3 225 51.6
AL7G31370 Arabidopsis lyrata HOM05D005176 ORTHO05D006482 2.7e-60 236.9 242 48.8
Haze_06890 Corylus avellana HOM05D005176 ORTHO05D006482 2.7e-60 236.9 215 54.9
Thhalv10025624m.g Eutrema salsugineum HOM05D005176 ORTHO05D006482 2.7e-60 236.9 210 54.3
Gohir.A05G173800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 2.7e-60 236.9 239 50.2
SMO200G0146 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 2.7e-60 236.9 191 58.1
THA.LOC104812984 Tarenaya hassleriana HOM05D005176 ORTHO05D006482 2.7e-60 236.9 212 54.2
TWI63G1683 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 2.7e-60 236.9 238 51.7
TAR626G1813 Trochodendron aralioides HOM05D005176 ORTHO05D006482 2.7e-60 236.9 220 54.1
FAN25G2381 Fragaria x ananassa HOM05D005176 ORTHO05D006482 3.5e-60 236.5 218 54.1
Lsat_1_v5_gn_7_14460 Lactuca sativa HOM05D005176 ORTHO05D006482 3.5e-60 236.5 195 55.4
Lj6g0018145 Lotus japonicus HOM05D005176 ORTHO05D006482 3.5e-60 236.5 195 57.4
Psat1g177440 Pisum sativum HOM05D005176 ORTHO05D006482 3.5e-60 236.5 195 56.9
PGR042G2916 Punica granatum HOM05D005176 ORTHO05D006482 3.5e-60 236.5 191 57.6
SalBow8G4341 Salvia bowleyana HOM05D005176 ORTHO05D006482 4.6e-60 236.1 195 56.4
TPR.G13024 Trifolium pratense HOM05D005176 ORTHO05D006482 4.6e-60 236.1 195 56.9
Atru.chr10.2310 Acer truncatum HOM05D005176 ORTHO05D006482 6.0e-60 235.7 195 56.9
Ca_00707_v3 Cicer arietinum L. HOM05D005176 ORTHO05D006482 6.0e-60 235.7 195 56.9
Lalb_Chr15g0087861 Lupinus albus HOM05D005176 ORTHO05D006482 6.0e-60 235.7 195 57.4
Glyma.09G008500 Glycine max HOM05D005176 ORTHO05D006482 7.8e-60 235.3 195 56.9
Glyma.15G112900 Glycine max HOM05D005176 ORTHO05D006482 7.8e-60 235.3 195 56.9
Medtr2g025140 Medicago truncatula HOM05D005176 ORTHO05D006482 7.8e-60 235.3 195 56.9
TAR624G0457 Trochodendron aralioides HOM05D005176 ORTHO05D006482 7.8e-60 235.3 195 56.4
EL10Ac8g20147 Beta vulgaris HOM05D005176 ORTHO05D006482 1.0e-59 235.0 210 55.7
CsaV3_1G045890 Cucumis sativus L. HOM05D005176 ORTHO05D006482 1.0e-59 235.0 210 54.3
QL03p008214 Quercus lobata HOM05D005176 ORTHO05D006482 1.0e-59 235.0 226 53.1
QL05p070074 Quercus lobata HOM05D005176 ORTHO05D006482 1.0e-59 235.0 226 53.1
Nn1g03357 Nelumbo nucifera HOM05D005176 ORTHO05D006482 1.3e-59 234.6 210 53.8
Hund21443 Selenicereus undatus HOM05D005176 ORTHO05D006482 1.3e-59 234.6 229 52.0
TWI38G1933 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 1.3e-59 234.6 237 51.5
CBR_g16017 Chara braunii HOM05D005176 ORTHO05D006482 1.7e-59 234.2 190 57.4
HanXRQChr05g0129171 Helianthus annuus HOM05D005176 ORTHO05D006482 1.7e-59 234.2 210 53.8
Potri.004G002600 Populus trichocarpa HOM05D005176 ORTHO05D006482 1.7e-59 234.2 210 54.8
Cfa000134 Carpinus fangiana HOM05D005176 ORTHO05D006482 2.3e-59 233.8 224 53.1
MELO3C021713.2 Cucumis melo HOM05D005176 ORTHO05D006482 2.3e-59 233.8 221 52.5
Pp3c1_30120 Physcomitrium patens HOM05D005176 ORTHO05D006482 2.3e-59 233.8 219 52.1
Cc09_g01070 Coffea canephora HOM05D005176 ORTHO05D006482 3.0e-59 233.4 210 53.3
PSO832G1336 Papaver somniferum HOM05D005176 ORTHO05D006482 3.0e-59 233.4 195 55.4
Pp3c2_11230 Physcomitrium patens HOM05D005176 ORTHO05D006482 3.0e-59 233.4 191 57.1
ATR1128G104 Amborella trichopoda HOM05D005176 ORTHO05D006482 5.1e-59 232.6 211 55.5
Sp7g20380 Schrenkiella parvula HOM05D005176 ORTHO05D006482 5.1e-59 232.6 210 53.8
Thecc.06G230100 Theobroma cacao HOM05D005176 ORTHO05D006482 6.6e-59 232.3 210 55.2
MSTRG.16005 Avicennia marina HOM05D005176 ORTHO05D006482 8.6e-59 231.9 195 55.4
Os04g0668900 Oryza sativa ssp. japonica HOM05D005176 ORTHO05D006482 1.9e-58 230.7 213 52.6
BcaNung03749 Brassica carinata HOM05D005176 ORTHO05D006482 3.3e-58 229.9 210 53.3
Potri.011G021800 Populus trichocarpa HOM05D005176 ORTHO05D006482 3.3e-58 229.9 225 52.9
Sabra04G0001100 Salix brachista HOM05D005176 ORTHO05D006482 3.3e-58 229.9 210 54.3
vmacro03656 Vaccinium macrocarpon HOM05D005176 ORTHO05D006482 3.3e-58 229.9 232 50.9
Sc05g0009510 Simmondsia chinensis HOM05D005176 ORTHO05D006482 4.3e-58 229.6 210 53.8
Mapoly0050s0020 Marchantia polymorpha HOM05D005176 ORTHO05D006482 5.6e-58 229.2 221 51.6
BcaC09g51146 Brassica carinata HOM05D005176 ORTHO05D006482 7.3e-58 228.8 195 54.9
C01p16510 Brassica napus HOM05D005176 ORTHO05D006482 7.3e-58 228.8 195 54.9
BolC1t01601H Brassica oleracea HOM05D005176 ORTHO05D006482 7.3e-58 228.8 195 54.9
A01p13630 Brassica napus HOM05D005176 ORTHO05D006482 9.5e-58 228.4 195 54.4
BraA01t01306Z Brassica rapa HOM05D005176 ORTHO05D006482 9.5e-58 228.4 195 54.4
DCAR_004870 Daucus carota HOM05D005176 ORTHO05D006482 1.1e-56 224.9 252 47.6
Aa31LG6G4370 Aethionema arabicum HOM05D005176 ORTHO05D006482 2.4e-56 223.8 258 46.1
MCO02G133 Micromonas commoda HOM05D005176 ORTHO05D006482 2.0e-55 220.7 195 55.9
Zm00001eb066910 Zea mays HOM05D005176 ORTHO05D006482 2.6e-55 220.3 195 53.8
PSO210G5061 Papaver somniferum HOM05D005176 ORTHO05D006482 4.9e-54 216.1 224 48.2
Nitab4.5_0000143g0540 Nicotiana tabacum HOM05D005176 ORTHO05D006482 1.9e-53 214.2 220 50.9
CDE04G3552 Ceratophyllum demersum HOM05D005176 ORTHO05D006482 9.2e-53 211.8 262 42.4
SGA_v2.0_scaffold7G03794 Striga asiatica HOM05D005176 ORTHO05D006482 1.6e-52 211.1 219 49.8
PRCOL_00003826 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 1.7e-51 207.6 183 53.6
Ah.09g234400 Amaranthus hybridus HOM05D005176 ORTHO05D006482 9.6e-50 201.8 210 49.0
PSO675G3403 Papaver somniferum HOM05D005176 ORTHO05D006482 9.6e-50 201.8 183 52.5
Nitab4.5_0001198g0240 Nicotiana tabacum HOM05D005176 ORTHO05D006482 2.8e-49 200.3 183 52.5
GSVIVG01006689001 Vitis vinifera HOM05D005176 ORTHO05D006482 4.7e-49 199.5 194 50.0
Eucgr.E03967 Eucalyptus grandis HOM05D005176 ORTHO05D006482 3.4e-47 193.4 237 45.6
MBI16_g26179_MAGBIO Magnolia biondii HOM05D005176 ORTHO05D006482 7.6e-47 192.2 233 45.1
Peaxi162Scf00063g00213 Petunia axillaris HOM05D005176 ORTHO05D006482 1.7e-46 191.0 165 56.4
MELO3C021708.2 Cucumis melo HOM05D005176 ORTHO05D006482 2.2e-46 190.7 247 43.3
FAN21G2852 Fragaria x ananassa HOM05D005176 ORTHO05D006482 6.4e-46 189.1 242 45.5
MD05G1354300 Malus domestica HOM05D005176 ORTHO05D006482 2.1e-41 174.1 234 41.5
HPP92_004745 Vanilla planifolia HOM05D005176 ORTHO05D006482 6.4e-38 162.5 155 53.5
Zm00001eb066920 Zea mays HOM05D005176 ORTHO05D006482 1.4e-37 161.4 233 39.1
ClCG01G009770 Citrullus lanatus HOM05D005176 ORTHO05D006482 9.3e-37 158.7 183 45.4
Dinv13952 Davidia involucrata HOM05D005176 ORTHO05D006482 8.1e-33 145.6 145 49.7
Hma1.2p1_2753F.1_g327930 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 1.2e-31 141.7 199 40.2
FAN21G2340 Fragaria x ananassa HOM05D005176 ORTHO05D006482 2.0e-31 141.0 128 50.0
Duzib235G1273 Durio zibethinus HOM05D005176 ORTHO05D006482 9.6e-26 122.1 109 50.5
CBR_g12318 Chara braunii HOM05D000019 ORTHO05D008477 6.2e-25 119.4 149 48.3
CBR_g12320 Chara braunii HOM05D000019 ORTHO05D009492 2.7e-20 104.0 54 72.2
Duzib160G0919 Durio zibethinus HOM05D005176 ORTHO05D006482 1.1e-18 98.6 233 32.6
Hma1.2p1_0298F.1_g117340 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 2.5e-18 97.4 70 60.0
AagrBONN_evm.TU.Sc2ySwM_344.415 Anthoceros agrestis HOM05D005176 ORTHO05D006482 9.7e-18 95.5 85 48.2
SEGI_01990 Sequoiadendron giganteum HOM05D005176 ORTHO05D006482 2.2e-17 94.4 68 58.8
CBR_g12323 Chara braunii HOM05D005176 ORTHO05D006482 1.0e-14 85.5 65 64.6
SEGI_26802 Sequoiadendron giganteum HOM05D005176 ORTHO05D006482 1.6e-12 78.2 67 58.2
HPP92_004744 Vanilla planifolia HOM05D005176 ORTHO05D006482 1.6e-12 78.2 61 62.3
AUR62021889 Chenopodium quinoa HOM05D005176 ORTHO05D006482 3.6e-12 77.0 88 45.5
GSVIVG01007272001 Vitis vinifera HOM05D005176 ORTHO05D006482 8.2e-09 65.9 225 29.3
A03p53390 Brassica napus HOM05D005176 ORTHO05D006482 1.4e-08 65.1 90 46.7
Manes.06G012700 Manihot esculenta HOM05D001659 ORTHO05D001659 4.5e-07 60.1 203 27.1
Lj3g0010948 Lotus japonicus HOM05D005176 ORTHO05D006482 1.7e-06 58.2 38 63.2
PSO447G0350 Papaver somniferum HOM05D001659 ORTHO05D001659 2.9e-06 57.4 141 27.7
Hund06382 Selenicereus undatus HOM05D001659 ORTHO05D001659 5.0e-06 56.6 182 26.9
Gohir.D02G197300 Gossypium hirsutum HOM05D001659 ORTHO05D001659 6.5e-06 56.2 182 25.8


User provided reference genes

Program Settings