Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre07.g346100 Chlamydomonas reinhardtii HOM05D006099 ORTHO05D007317 8.9e-212 740.3 470 100.0
Mapoly0013s0098 Marchantia polymorpha HOM05D006099 ORTHO05D007317 5.0e-29 133.3 287 32.8
AagrBONN_evm.TU.Sc2ySwM_228.1579 Anthoceros agrestis HOM05D006099 ORTHO05D007317 1.1e-28 132.1 290 33.1
Pp3c6_10670 Physcomitrium patens HOM05D006099 ORTHO05D007317 1.1e-28 132.1 321 32.1
CSS0009505 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 3.2e-28 130.6 295 31.9
Thhalv10025966m.g Eutrema salsugineum HOM05D006099 ORTHO05D007317 4.7e-27 126.7 291 32.0
ECA240G1547 Erigeron canadensis HOM05D006099 ORTHO05D007317 7.9e-27 125.9 299 31.1
THA.LOC104803891 Tarenaya hassleriana HOM05D006099 ORTHO05D007317 1.0e-26 125.6 291 30.9
AL7G20920 Arabidopsis lyrata HOM05D006099 ORTHO05D007317 1.4e-26 125.2 290 30.3
HanXRQChr13g0419861 Helianthus annuus HOM05D006099 ORTHO05D007317 1.8e-26 124.8 310 31.3
Nn4g25135 Nelumbo nucifera HOM05D006099 ORTHO05D007317 2.3e-26 124.4 317 30.3
FvH4_2g30570 Fragaria vesca HOM05D006099 ORTHO05D007317 5.1e-26 123.2 288 29.9
AT4G31150 Arabidopsis thaliana HOM05D006099 ORTHO05D007317 6.7e-26 122.9 290 29.7
CBR_g34340 Chara braunii HOM05D006099 ORTHO05D007317 6.7e-26 122.9 438 29.2
Sed0006978 Sechium edule HOM05D006099 ORTHO05D007317 6.7e-26 122.9 317 29.3
Zm00001eb274410 Zea mays HOM05D006099 ORTHO05D007317 6.7e-26 122.9 309 30.7
BraA08t33839Z Brassica rapa HOM05D006099 ORTHO05D007317 1.5e-25 121.7 290 29.7
Solyc12g096280.2 Solanum lycopersicum HOM05D006099 ORTHO05D007317 2.0e-25 121.3 319 31.7
BolC3t21124H Brassica oleracea HOM05D006099 ORTHO05D007317 2.6e-25 120.9 291 30.2
CiPaw.07G216100 Carya illinoinensis HOM05D006099 ORTHO05D007317 2.6e-25 120.9 294 30.6
Medtr1g010130 Medicago truncatula HOM05D006099 ORTHO05D007317 2.6e-25 120.9 299 27.8
CANSAT25G1623 Cannabis sativa HOM05D006099 ORTHO05D007317 3.3e-25 120.6 288 30.9
Actinidia03572 Actinidia chinensis HOM05D006099 ORTHO05D007317 4.4e-25 120.2 312 31.1
Aa31LG2G19160 Aethionema arabicum HOM05D006099 ORTHO05D007317 4.4e-25 120.2 293 28.3
Sp7g29030 Schrenkiella parvula HOM05D006099 ORTHO05D007317 5.7e-25 119.8 291 29.9
Lj5g0025000 Lotus japonicus HOM05D006099 ORTHO05D007317 7.4e-25 119.4 286 28.3
PSO170G3285 Papaver somniferum HOM05D006099 ORTHO05D007317 7.4e-25 119.4 276 31.5
Sopen12g032140 Solanum pennellii HOM05D006099 ORTHO05D007317 7.4e-25 119.4 319 31.7
CAN.G947.18 Capsicum annuum HOM05D006099 ORTHO05D007317 9.7e-25 119.0 319 30.7
Cfa013234 Carpinus fangiana HOM05D006099 ORTHO05D007317 1.3e-24 118.6 294 31.0
Manes.15G141200 Manihot esculenta HOM05D006099 ORTHO05D007317 1.3e-24 118.6 295 29.8
PSO063G7181 Papaver somniferum HOM05D006099 ORTHO05D007317 1.3e-24 118.6 294 30.6
QL12p030693 Quercus lobata HOM05D006099 ORTHO05D007317 1.3e-24 118.6 297 28.6
C03p88160 Brassica napus HOM05D006099 ORTHO05D007317 1.7e-24 118.2 317 29.3
Dinv37480 Davidia involucrata HOM05D006099 ORTHO05D007317 1.7e-24 118.2 295 30.8
Carub.0007s0938 Capsella rubella HOM05D006099 ORTHO05D007317 3.7e-24 117.1 290 29.3
Gohir.A05G066400 Gossypium hirsutum HOM05D006099 ORTHO05D007317 3.7e-24 117.1 279 31.5
MD08G1132300 Malus domestica HOM05D006099 ORTHO05D007317 3.7e-24 117.1 288 28.8
Nitab4.5_0001159g0110 Nicotiana tabacum HOM05D006099 ORTHO05D007317 3.7e-24 117.1 312 30.8
VMungo0647G0711 Vigna mungo HOM05D006099 ORTHO05D007317 3.7e-24 117.1 286 28.7
Ciclev10009104m.g Citrus clementina HOM05D006099 ORTHO05D007317 8.2e-24 115.9 295 29.2
Hma1.2p1_1615F.1_g293710 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 8.2e-24 115.9 283 30.0
Ca_27927_v3 Cicer arietinum L. HOM05D006099 ORTHO05D007317 1.8e-23 114.8 288 27.8
CsaV3_2G031500 Cucumis sativus L. HOM05D006099 ORTHO05D007317 1.8e-23 114.8 317 27.8
Gohir.D05G068900 Gossypium hirsutum HOM05D006099 ORTHO05D007317 1.8e-23 114.8 279 30.8
Gorai.009G069800 Gossypium raimondii HOM05D006099 ORTHO05D007317 1.8e-23 114.8 279 30.8
Lalb_Chr24g0402361 Lupinus albus HOM05D006099 ORTHO05D007317 1.8e-23 114.8 286 27.6
Lj7A751T33 Lonicera japonica HOM05D006099 ORTHO05D007317 3.1e-23 114.0 313 30.0
SMO351G0465 Selaginella moellendorffii HOM05D006099 ORTHO05D007317 3.1e-23 114.0 290 30.3
ATR0626G128 Amborella trichopoda HOM05D006099 ORTHO05D007317 4.1e-23 113.6 292 29.5
Thecc.09G001300 Theobroma cacao HOM05D006099 ORTHO05D007317 5.3e-23 113.2 280 30.0
arahy.Tifrunner.gnm1.ann1.AEW87R Arachis hypogaea HOM05D006099 ORTHO05D007317 1.5e-22 111.7 290 28.3
Lsat_1_v5_gn_3_111601 Lactuca sativa HOM05D006099 ORTHO05D007317 2.0e-22 111.3 303 30.0
ClCG08G012820 Citrullus lanatus HOM05D006099 ORTHO05D007317 4.5e-22 110.2 326 27.6
QL12p030880 Quercus lobata HOM05D006099 ORTHO05D007317 7.7e-22 109.4 322 26.7
GSVIVG01035588001 Vitis vinifera HOM05D006099 ORTHO05D007317 7.7e-22 109.4 301 28.2
A08p18780 Brassica napus HOM05D006099 ORTHO05D007317 1.3e-21 108.6 314 27.4
Phvul.001G057000 Phaseolus vulgaris HOM05D006099 ORTHO05D007317 1.3e-21 108.6 325 27.4
Rhsim07G0173500 Rhododendron simsii HOM05D006099 ORTHO05D007317 1.7e-21 108.2 324 28.7
Hma1.2p1_1615F.1_g293700 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 2.9e-21 107.5 116 48.3
Duzib168G0660 Durio zibethinus HOM05D006099 ORTHO05D007317 5.0e-21 106.7 312 27.9
Potri.018G001000 Populus trichocarpa HOM05D006099 ORTHO05D007317 6.5e-21 106.3 293 27.0
PGSC0003DMG400029284 Solanum tuberosum HOM05D006099 ORTHO05D007317 1.1e-20 105.5 315 30.5
Cc00_g12770 Coffea canephora HOM05D006099 ORTHO05D007317 1.5e-20 105.1 311 30.2
PGR142G3206 Punica granatum HOM05D006099 ORTHO05D007317 1.5e-20 105.1 319 27.6
Cpa.g.sc148.13 Carica papaya HOM05D006099 ORTHO05D007317 2.5e-20 104.4 116 47.4
Manes.15G141100 Manihot esculenta HOM05D006099 ORTHO05D007317 3.2e-20 104.0 308 27.6
MCO10G112 Micromonas commoda HOM05D006099 ORTHO05D007317 7.2e-20 102.8 297 33.0
BcaB03g12683 Brassica carinata HOM05D006099 ORTHO05D007317 1.2e-19 102.1 116 44.8
arahy.Tifrunner.gnm1.ann1.ZJIP4K Arachis hypogaea HOM05D006099 ORTHO05D007317 1.6e-19 101.7 283 27.9
TWI32G0633 Tripterygium wilfordii HOM05D006099 ORTHO05D007317 2.1e-19 101.3 119 47.1
MELO3C011207.2 Cucumis melo HOM05D006099 ORTHO05D007317 3.6e-19 100.5 314 26.4
CSS0007227 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 4.7e-19 100.1 109 47.7
Glyma.14G131200 Glycine max HOM05D006099 ORTHO05D007317 4.7e-19 100.1 275 26.9
HanXRQChr13g0419831 Helianthus annuus HOM05D006099 ORTHO05D007317 6.1e-19 99.8 284 29.2
Oeu035175.2 Olea europaea HOM05D006099 ORTHO05D007317 2.3e-18 97.8 288 29.2
SGA_v2.0_scaffold27G11694 Striga asiatica HOM05D006099 ORTHO05D007317 3.0e-18 97.4 327 29.1
RcHm_v2.0_Chr6g0312441 Rosa chinensis HOM05D006099 ORTHO05D007317 6.7e-18 96.3 288 27.1
FAN27G0146 Fragaria x ananassa HOM05D006099 ORTHO05D007317 1.1e-17 95.5 301 26.2
Sc23g0004430 Simmondsia chinensis HOM05D006099 ORTHO05D007317 1.1e-17 95.5 301 28.6
Atru.chr7.2710 Acer truncatum HOM05D006099 ORTHO05D007317 2.0e-17 94.7 320 24.7
FAN15G2948 Fragaria x ananassa HOM05D006099 ORTHO05D007317 2.6e-17 94.4 301 26.2
Eucgr.C02144 Eucalyptus grandis HOM05D006099 ORTHO05D007317 2.8e-16 90.9 288 27.4
HPP92_011639 Vanilla planifolia HOM05D006099 ORTHO05D007317 8.2e-16 89.4 125 40.0
Os06g0663600 Oryza sativa ssp. japonica HOM05D006099 ORTHO05D007317 1.4e-15 88.6 133 39.1
Ah.11g044160 Amaranthus hybridus HOM05D006099 ORTHO05D007317 1.8e-15 88.2 256 27.7
Sabra18G0005300 Salix brachista HOM05D002037 ORTHO05D002762 2.4e-15 87.8 303 26.7
Zm00001eb274550 Zea mays HOM05D006099 ORTHO05D007317 2.4e-15 87.8 113 42.5
Zm00001eb442290 Zea mays HOM05D006099 ORTHO05D007317 2.4e-15 87.8 113 42.5
Zm00001eb274500 Zea mays HOM05D006099 ORTHO05D007317 5.3e-15 86.7 113 41.6
Hund03250 Selenicereus undatus HOM05D006099 ORTHO05D007317 9.1e-15 85.9 99 44.4
DCAR_000694 Daucus carota HOM05D006099 ORTHO05D007317 4.5e-14 83.6 291 26.8
AUR62020668 Chenopodium quinoa HOM05D006099 ORTHO05D007317 5.9e-14 83.2 156 35.9
CDE06G2693 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 6.5e-13 79.7 231 28.6
SalBow4G2099 Salvia bowleyana HOM05D006099 ORTHO05D007317 8.5e-13 79.3 117 40.2
EL10Ac2g03669 Beta vulgaris HOM05D006099 ORTHO05D007317 1.2e-11 75.5 236 27.5
Haze_21663 Corylus avellana HOM05D006099 ORTHO05D007317 2.7e-11 74.3 283 25.4
FAN24G0140 Fragaria x ananassa HOM05D006099 ORTHO05D007317 4.7e-11 73.6 277 26.7
AUR62028064 Chenopodium quinoa HOM05D006099 ORTHO05D007317 1.8e-10 71.6 91 40.7
CARHR239060 Cardamine hirsuta HOM05D006099 ORTHO05D007317 2.0e-09 68.2 68 50.0
Migut.A00464 Erythranthe guttata HOM05D006099 ORTHO05D007317 5.7e-09 66.6 46 60.9
vmacro05090 Vaccinium macrocarpon HOM05D006099 ORTHO05D007317 5.7e-09 66.6 76 50.0
unitig_32.g10951 Utricularia gibba HOM05D006099 ORTHO05D007317 7.5e-09 66.2 230 27.4
HPP92_011640 Vanilla planifolia HOM05D006099 ORTHO05D007317 7.5e-09 66.2 73 46.6
Sc23g0004790 Simmondsia chinensis HOM05D006099 ORTHO05D007317 9.8e-09 65.9 102 40.2
BcaC08g44050 Brassica carinata HOM05D006099 ORTHO05D007317 1.3e-08 65.5 70 44.3
BolC6t36631H Brassica oleracea HOM05D006099 ORTHO05D007317 1.3e-08 65.5 70 44.3
TPR.G30957 Trifolium pratense HOM05D006099 ORTHO05D007317 1.3e-08 65.5 66 48.5
RcHm_v2.0_Chr6g0312501 Rosa chinensis HOM05D006099 ORTHO05D007317 1.7e-08 65.1 68 44.1
C03p41630 Brassica napus HOM05D006099 ORTHO05D007317 3.7e-08 63.9 70 42.9
Psat6g031520 Pisum sativum HOM05D006099 ORTHO05D007317 4.8e-08 63.5 75 41.3
BcaC04g20481 Brassica carinata HOM05D006099 ORTHO05D007317 1.8e-07 61.6 70 42.9
C09p43040 Brassica napus HOM05D006099 ORTHO05D007317 1.8e-07 61.6 70 42.9
Peaxi162Scf00876g00025 Petunia axillaris HOM05D006099 ORTHO05D007317 1.2e-06 58.9 84 42.9
MBI16_g00820_MAGBIO Magnolia biondii HOM05D006099 ORTHO05D007317 2.0e-06 58.2 56 48.2
Nitab4.5_0001327g0030 Nicotiana tabacum HOM05D006099 ORTHO05D007317 2.0e-06 58.2 68 48.5
Prupe.1G463600 Prunus persica HOM05D006099 ORTHO05D007317 5.9e-06 56.6 57 50.9


User provided reference genes

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