Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre07.g345700 Chlamydomonas reinhardtii HOM05D004168 ORTHO05D004999 1.7e-144 516.5 351 100.0
SMO340G0178 Selaginella moellendorffii HOM05D004168 ORTHO05D004999 4.1e-29 133.3 211 34.1
Dinv35958 Davidia involucrata HOM05D004168 ORTHO05D004999 4.6e-28 129.8 216 33.3
CBR_g66636 Chara braunii HOM05D004168 ORTHO05D004999 1.0e-27 128.6 212 33.0
GSVIVG01009491001 Vitis vinifera HOM05D004168 ORTHO05D004999 1.3e-27 128.3 213 32.9
CsaV3_4G034330 Cucumis sativus L. HOM05D004168 ORTHO05D004999 3.0e-27 127.1 213 33.3
Ah.01g019770 Amaranthus hybridus HOM05D004168 ORTHO05D004999 3.9e-27 126.7 217 32.7
Eucgr.F00224 Eucalyptus grandis HOM05D004168 ORTHO05D004999 3.9e-27 126.7 213 32.9
Manes.05G174100 Manihot esculenta HOM05D004168 ORTHO05D004999 3.9e-27 126.7 213 32.9
TAR376G0672 Trochodendron aralioides HOM05D004168 ORTHO05D004999 3.9e-27 126.7 211 32.2
Cpa.g.sc13.291 Carica papaya HOM05D004168 ORTHO05D004999 5.0e-27 126.3 213 32.9
Ciclev10002229m.g Citrus clementina HOM05D004168 ORTHO05D004999 5.0e-27 126.3 215 33.0
Gohir.A05G202600 Gossypium hirsutum HOM05D004168 ORTHO05D004999 5.0e-27 126.3 213 34.3
MD08G1101200 Malus domestica HOM05D004168 ORTHO05D004999 5.0e-27 126.3 213 33.3
Manes.18G037500 Manihot esculenta HOM05D004168 ORTHO05D004999 5.0e-27 126.3 213 32.9
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 6.6e-27 125.9 213 32.9
Medtr3g101750 Medicago truncatula HOM05D004168 ORTHO05D004999 8.6e-27 125.6 213 31.9
CSS0011562 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 1.1e-26 125.2 213 32.9
CSS0013402 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 1.1e-26 125.2 213 32.9
GSVIVG01024177001 Vitis vinifera HOM05D004168 ORTHO05D004999 1.1e-26 125.2 213 31.9
EL10As14g24078 Beta vulgaris HOM05D004168 ORTHO05D004999 1.5e-26 124.8 217 31.8
CDE06G0679 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 1.5e-26 124.8 212 30.2
Cc10_g04130 Coffea canephora HOM05D004168 ORTHO05D004999 1.5e-26 124.8 213 31.9
Duzib116G0163 Durio zibethinus HOM05D004168 ORTHO05D004999 1.5e-26 124.8 213 33.3
AT4G17650 Arabidopsis thaliana HOM05D004168 ORTHO05D004999 1.9e-26 124.4 213 31.9
Lj1g0018004 Lotus japonicus HOM05D004168 ORTHO05D004999 1.9e-26 124.4 213 31.9
arahy.Tifrunner.gnm1.ann1.TVNS6S Arachis hypogaea HOM05D004168 ORTHO05D004999 2.5e-26 124.0 238 31.5
Ca_15947_v3 Cicer arietinum L. HOM05D004168 ORTHO05D004999 2.5e-26 124.0 213 32.4
Migut.C00576 Erythranthe guttata HOM05D004168 ORTHO05D004999 2.5e-26 124.0 213 32.4
Gohir.D05G205800 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.5e-26 124.0 213 33.8
Gorai.009G212100 Gossypium raimondii HOM05D004168 ORTHO05D004999 2.5e-26 124.0 213 33.8
HanXRQChr02g0039451 Helianthus annuus HOM05D004168 ORTHO05D004999 2.5e-26 124.0 211 30.8
Prupe.1G435200 Prunus persica HOM05D004168 ORTHO05D004999 2.5e-26 124.0 213 32.4
QL12p001799 Quercus lobata HOM05D004168 ORTHO05D004999 2.5e-26 124.0 213 32.9
Thecc.08G006900 Theobroma cacao HOM05D004168 ORTHO05D004999 2.5e-26 124.0 213 32.9
TAR628G1263 Trochodendron aralioides HOM05D004168 ORTHO05D004999 2.5e-26 124.0 211 31.8
arahy.Tifrunner.gnm1.ann1.IT5IHR Arachis hypogaea HOM05D004168 ORTHO05D004999 3.3e-26 123.6 238 31.1
TPR.G24157 Trifolium pratense HOM05D004168 ORTHO05D004999 3.3e-26 123.6 213 31.5
COL.COLO4_26513 Corchorus olitorius HOM05D004168 ORTHO05D004999 4.3e-26 123.2 213 32.4
EL10Ac9g21781 Beta vulgaris HOM05D004168 ORTHO05D004999 5.6e-26 122.9 213 31.5
ECA247G0458 Erigeron canadensis HOM05D004168 ORTHO05D004999 5.6e-26 122.9 211 30.8
Thhalv10026045m.g Eutrema salsugineum HOM05D004168 ORTHO05D004999 5.6e-26 122.9 213 31.9
Pp3c21_16730 Physcomitrium patens HOM05D004168 ORTHO05D004999 5.6e-26 122.9 212 32.5
Sed0010101 Sechium edule HOM05D004168 ORTHO05D004999 5.6e-26 122.9 213 32.9
TWI36G1266 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 5.6e-26 122.9 213 31.9
VMungo1309G0269 Vigna mungo HOM05D004168 ORTHO05D004999 5.6e-26 122.9 213 31.9
AagrBONN_evm.TU.Sc2ySwM_228.4844 Anthoceros agrestis HOM05D004168 ORTHO05D004999 7.3e-26 122.5 213 32.4
CiPaw.11G099200 Carya illinoinensis HOM05D004168 ORTHO05D004999 7.3e-26 122.5 279 31.2
Lsat_1_v5_gn_1_21041 Lactuca sativa HOM05D004168 ORTHO05D004999 7.3e-26 122.5 211 30.8
Peaxi162Scf00252g00056 Petunia axillaris HOM05D004168 ORTHO05D004999 7.3e-26 122.5 213 31.5
Rhsim06G0050100 Rhododendron simsii HOM05D004168 ORTHO05D004999 7.3e-26 122.5 213 31.5
FvH4_2g34410 Fragaria vesca HOM05D004168 ORTHO05D004999 9.5e-26 122.1 211 31.8
FAN20G1800 Fragaria x ananassa HOM05D004168 ORTHO05D004999 9.5e-26 122.1 211 31.8
FAN24G2672 Fragaria x ananassa HOM05D004168 ORTHO05D004999 9.5e-26 122.1 211 31.8
Mapoly0004s0036 Marchantia polymorpha HOM05D004168 ORTHO05D004999 9.5e-26 122.1 232 31.0
Rhsim07G0228300 Rhododendron simsii HOM05D004168 ORTHO05D004999 9.5e-26 122.1 215 32.1
RcHm_v2.0_Chr6g0307961 Rosa chinensis HOM05D004168 ORTHO05D004999 9.5e-26 122.1 211 31.8
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 1.2e-25 121.7 213 31.5
arahy.Tifrunner.gnm1.ann1.85Q9C5 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.2e-25 121.7 238 30.3
CiPaw.12G069100 Carya illinoinensis HOM05D004168 ORTHO05D004999 1.2e-25 121.7 213 31.9
Nitab4.5_0002760g0060 Nicotiana tabacum HOM05D004168 ORTHO05D004999 1.2e-25 121.7 281 29.5
PSO384G0569 Papaver somniferum HOM05D004168 ORTHO05D004999 1.2e-25 121.7 213 31.5
Potri.002G126000 Populus trichocarpa HOM05D004168 ORTHO05D004999 1.2e-25 121.7 232 31.0
Sed0009126 Sechium edule HOM05D004168 ORTHO05D004999 1.2e-25 121.7 211 32.7
DCAR_019452 Daucus carota HOM05D004168 ORTHO05D004999 1.6e-25 121.3 213 31.9
Psat5g043040 Pisum sativum HOM05D004168 ORTHO05D004999 1.6e-25 121.3 213 31.5
THA.LOC104812820 Tarenaya hassleriana HOM05D004168 ORTHO05D004999 1.6e-25 121.3 213 31.9
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 2.1e-25 120.9 213 31.0
Aqoxy1G00522 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 2.1e-25 120.9 211 29.4
AL7G36940 Arabidopsis lyrata HOM05D004168 ORTHO05D004999 2.1e-25 120.9 213 31.5
Gorai.010G019900 Gossypium raimondii HOM05D004168 ORTHO05D004999 2.1e-25 120.9 214 32.7
SGA_v2.0_scaffold14G07004 Striga asiatica HOM05D004168 ORTHO05D004999 2.1e-25 120.9 213 31.9
vmacro21519 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 2.1e-25 120.9 213 31.0
Gohir.D06G017000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.8e-25 120.6 214 32.7
Aqoxy2G00574 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 3.6e-25 120.2 211 30.3
MBI15_g10497_MAGBIO Magnolia biondii HOM05D004168 ORTHO05D004999 3.6e-25 120.2 211 30.3
Sabra02G0098700 Salix brachista HOM05D004168 ORTHO05D004999 3.6e-25 120.2 213 31.5
Sc02g0007150 Simmondsia chinensis HOM05D004168 ORTHO05D004999 3.6e-25 120.2 215 30.7
Solyc04g078890.4 Solanum lycopersicum HOM05D004168 ORTHO05D004999 3.6e-25 120.2 213 30.0
Sopen04g032490 Solanum pennellii HOM05D004168 ORTHO05D004999 3.6e-25 120.2 213 30.0
MSTRG.1350 Avicennia marina HOM05D004168 ORTHO05D004999 4.7e-25 119.8 213 30.5
AUR62011389 Chenopodium quinoa HOM05D004168 ORTHO05D004999 4.7e-25 119.8 217 30.4
TWI56G0083 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 4.7e-25 119.8 213 31.5
Carub.0007s2373 Capsella rubella HOM05D004168 ORTHO05D004999 6.2e-25 119.4 213 30.5
AUR62016672 Chenopodium quinoa HOM05D004168 ORTHO05D004999 6.2e-25 119.4 217 30.4
Glyma.04G039100 Glycine max HOM05D004168 ORTHO05D004999 6.2e-25 119.4 213 31.5
HanXRQChr09g0267591 Helianthus annuus HOM05D004168 ORTHO05D004999 6.2e-25 119.4 236 29.2
Hund06209 Selenicereus undatus HOM05D004168 ORTHO05D004999 6.2e-25 119.4 215 31.6
PGSC0003DMG401007971 Solanum tuberosum HOM05D004168 ORTHO05D004999 8.1e-25 119.0 213 30.0
CAN.G1030.1 Capsicum annuum HOM05D004168 ORTHO05D004999 1.1e-24 118.6 213 31.0
CARHR224370 Cardamine hirsuta HOM05D004168 ORTHO05D004999 1.1e-24 118.6 213 31.5
Lalb_Chr23g0267171 Lupinus albus HOM05D004168 ORTHO05D004999 1.1e-24 118.6 213 31.0
Nitab4.5_0000287g0250 Nicotiana tabacum HOM05D004168 ORTHO05D004999 1.1e-24 118.6 281 29.5
PGR031G2881 Punica granatum HOM05D004168 ORTHO05D004999 1.1e-24 118.6 213 31.0
CANSAT25G0219 Cannabis sativa HOM05D004168 ORTHO05D004999 1.4e-24 118.2 215 28.8
FAN15G2652 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.4e-24 118.2 211 30.8
PGR083G0647 Punica granatum HOM05D004168 ORTHO05D004999 1.8e-24 117.9 213 31.9
Aa31LG6G400 Aethionema arabicum HOM05D004168 ORTHO05D004999 2.3e-24 117.5 213 30.5
Glyma.06G040100 Glycine max HOM05D004168 ORTHO05D004999 2.3e-24 117.5 213 31.0
Hund00296 Selenicereus undatus HOM05D004168 ORTHO05D004999 2.3e-24 117.5 215 31.2
Hund00303 Selenicereus undatus HOM05D004168 ORTHO05D004999 2.3e-24 117.5 215 31.2
Lj4A773T42 Lonicera japonica HOM05D004168 ORTHO05D004999 3.1e-24 117.1 213 31.0
Os01g0772400 Oryza sativa ssp. japonica HOM05D004168 ORTHO05D004999 4.0e-24 116.7 287 30.0
Oeu043572.2 Olea europaea HOM05D004168 ORTHO05D004999 5.2e-24 116.3 213 30.0
Sp7g16490 Schrenkiella parvula HOM05D004168 ORTHO05D004999 5.2e-24 116.3 213 31.0
BcaB04g18436 Brassica carinata HOM05D004168 ORTHO05D004999 6.8e-24 115.9 213 30.5
ECA232G1782 Erigeron canadensis HOM05D004168 ORTHO05D004999 1.5e-23 114.8 211 28.9
Pp3c22_1290 Physcomitrium patens HOM05D004168 ORTHO05D004999 1.5e-23 114.8 227 30.4
CANSAT11G0235 Cannabis sativa HOM05D004168 ORTHO05D004999 2.6e-23 114.0 213 28.6
A08p13270 Brassica napus HOM05D004168 ORTHO05D004999 3.4e-23 113.6 213 30.5
BraA08t33308Z Brassica rapa HOM05D004168 ORTHO05D004999 3.4e-23 113.6 213 30.5
HPP92_018641 Vanilla planifolia HOM05D004168 ORTHO05D004999 3.4e-23 113.6 211 29.9
BcaC09g51623 Brassica carinata HOM05D004168 ORTHO05D004999 4.4e-23 113.2 213 30.5
BcaNung00072 Brassica carinata HOM05D004168 ORTHO05D004999 4.4e-23 113.2 213 30.5
BcaNung06715 Brassica carinata HOM05D004168 ORTHO05D004999 4.4e-23 113.2 213 30.5
A01p09710 Brassica napus HOM05D004168 ORTHO05D004999 4.4e-23 113.2 213 30.5
BraA01t00914Z Brassica rapa HOM05D004168 ORTHO05D004999 4.4e-23 113.2 213 30.5
Lsat_1_v5_gn_4_125661 Lactuca sativa HOM05D004168 ORTHO05D004999 4.4e-23 113.2 253 27.7
C01p11320 Brassica napus HOM05D004168 ORTHO05D004999 5.8e-23 112.8 213 30.5
BolC1t01097H Brassica oleracea HOM05D001479 ORTHO05D001401 5.8e-23 112.8 213 30.5
unitig_19.g30012 Utricularia gibba HOM05D004168 ORTHO05D004999 5.8e-23 112.8 247 30.0
unitig_8.g5020 Utricularia gibba HOM05D004168 ORTHO05D004999 5.8e-23 112.8 247 30.0
DCAR_008795 Daucus carota HOM05D004168 ORTHO05D004999 2.9e-22 110.5 213 29.1
FAN27G1360 Fragaria x ananassa HOM05D004168 ORTHO05D004999 3.7e-22 110.2 200 31.5
Nn2g14539 Nelumbo nucifera HOM05D004168 ORTHO05D004999 4.9e-22 109.8 200 30.5
MSTRG.22261 Avicennia marina HOM05D004168 ORTHO05D004999 8.3e-22 109.0 237 28.3
DCAR_012778 Daucus carota HOM05D004168 ORTHO05D004999 1.4e-21 108.2 213 27.7
MD15G1082400 Malus domestica HOM05D004168 ORTHO05D004999 5.4e-21 106.3 99 48.5
SEGI_05154 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 2.1e-20 104.4 207 28.5
BcaC07g38091 Brassica carinata HOM05D004168 ORTHO05D004999 1.7e-19 101.3 211 28.0
MELO3C016753.2 Cucumis melo HOM05D004168 ORTHO05D004999 3.0e-19 100.5 184 31.5
Zm00001eb370050 Zea mays HOM05D004168 ORTHO05D004999 3.9e-19 100.1 182 30.2
Cfa012532 Carpinus fangiana HOM05D004168 ORTHO05D002421 4.3e-18 96.7 199 29.6
Cfa018557 Carpinus fangiana HOM05D004168 ORTHO05D004999 7.3e-18 95.9 184 30.4
MCO12G423 Micromonas commoda HOM05D004168 ORTHO05D004999 7.3e-18 95.9 205 31.2
Haze_17522 Corylus avellana HOM05D004168 ORTHO05D004999 9.5e-18 95.5 184 29.9
Gohir.A06G018666 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.2e-17 95.1 212 27.8
Phvul.009G065300 Phaseolus vulgaris HOM05D004168 ORTHO05D004999 6.2e-17 92.8 184 29.3
SalBow7G4699 Salvia bowleyana HOM05D004168 ORTHO05D004999 6.2e-17 92.8 187 29.4
Eucgr.L02367 Eucalyptus grandis HOM05D004168 ORTHO05D004999 2.2e-14 84.3 101 43.6
Lalb_Chr11g0062631 Lupinus albus HOM05D004168 ORTHO05D004999 4.9e-14 83.2 176 29.5
Eucgr.F02343 Eucalyptus grandis HOM05D004168 ORTHO05D004999 5.4e-13 79.7 101 41.6
SEGI_03271 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 3.5e-12 77.0 74 44.6
Eucgr.F02339 Eucalyptus grandis HOM05D004168 ORTHO05D004999 8.6e-11 72.4 98 35.7
arahy.Tifrunner.gnm1.ann1.ZKL3GY Arachis hypogaea HOM05D004168 ORTHO05D004999 2.1e-09 67.8 70 44.3
Zm00001eb151870 Zea mays HOM05D004168 ORTHO05D004999 1.7e-06 58.2 41 51.2
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 2.9e-06 57.4 53 47.2
arahy.Tifrunner.gnm1.ann1.TNR0C9 Arachis hypogaea HOM05D004168 ORTHO05D004999 3.8e-06 57.0 67 40.3


User provided reference genes

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