Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre07.g342550 Chlamydomonas reinhardtii HOM05D001860 ORTHO05D004922 5.8e-210 734.2 431 100.0
Potri.008G088500 Populus trichocarpa HOM05D001860 ORTHO05D004922 5.4e-30 136.3 251 34.7
HPP92_016837 Vanilla planifolia HOM05D001860 ORTHO05D004922 5.4e-30 136.3 255 34.1
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05D001860 ORTHO05D004922 2.0e-29 134.4 252 34.9
Glyma.02G109300 Glycine max HOM05D001860 ORTHO05D004922 3.5e-29 133.7 251 35.1
Medtr5g041780 Medicago truncatula HOM05D001860 ORTHO05D004922 7.8e-29 132.5 251 35.5
AUR62032811 Chenopodium quinoa HOM05D001860 ORTHO05D004922 1.0e-28 132.1 255 33.7
DCAR_026253 Daucus carota HOM05D001016 ORTHO05D003396 1.0e-28 132.1 251 35.5
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 1.0e-28 132.1 251 33.9
Hma1.2p1_1079F.1_g254970 Hydrangea macrophylla HOM05D001860 ORTHO05D004922 1.0e-28 132.1 251 34.3
Thecc.02G343500 Theobroma cacao HOM05D001860 ORTHO05D004922 1.0e-28 132.1 251 34.3
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 1.7e-28 131.3 251 35.5
Psat2g116760 Pisum sativum HOM05D001860 ORTHO05D004922 1.7e-28 131.3 251 33.9
TPR.G36138 Trifolium pratense HOM05D001860 ORTHO05D004922 2.3e-28 131.0 185 41.6
Lsat_1_v5_gn_3_52040 Lactuca sativa HOM05D001860 ORTHO05D004922 3.0e-28 130.6 251 32.7
QL03p068503 Quercus lobata HOM05D001860 ORTHO05D004922 3.0e-28 130.6 255 33.7
TWI31G0055 Tripterygium wilfordii HOM05D001860 ORTHO05D004922 3.9e-28 130.2 302 30.1
arahy.Tifrunner.gnm1.ann1.0UW6S5 Arachis hypogaea HOM05D001860 ORTHO05D004922 5.0e-28 129.8 251 34.3
ECA246G1483 Erigeron canadensis HOM05D001860 ORTHO05D004922 5.0e-28 129.8 251 34.7
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 6.6e-28 129.4 251 34.7
Pp3c24_6910 Physcomitrium patens HOM05D001860 ORTHO05D004922 6.6e-28 129.4 301 29.9
Atru.chr11.1760 Acer truncatum HOM05D001860 ORTHO05D004922 1.1e-27 128.6 251 33.9
A07p35820 Brassica napus HOM05D001482 ORTHO05D001499 1.1e-27 128.6 185 40.0
BraA07t31168Z Brassica rapa HOM05D001482 ORTHO05D001499 1.1e-27 128.6 185 40.0
Haze_11992 Corylus avellana HOM05D001860 ORTHO05D004922 1.1e-27 128.6 251 34.3
HanXRQChr17g0545281 Helianthus annuus HOM05D001860 ORTHO05D004922 1.1e-27 128.6 251 33.9
QL03p068521 Quercus lobata HOM05D001860 ORTHO05D004922 1.1e-27 128.6 251 33.9
Mapoly0002s0191 Marchantia polymorpha HOM05D001860 ORTHO05D004922 1.5e-27 128.3 365 29.6
Sed0020595 Sechium edule HOM05D001860 ORTHO05D004922 1.9e-27 127.9 251 33.5
Os02g0744100 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004922 2.5e-27 127.5 251 35.1
Duzib248G0566 Durio zibethinus HOM05D001860 ORTHO05D004922 3.3e-27 127.1 251 33.1
CiPaw.06G086900 Carya illinoinensis HOM05D001860 ORTHO05D004922 4.3e-27 126.7 250 33.2
RcHm_v2.0_Chr4g0439511 Rosa chinensis HOM05D001860 ORTHO05D004922 4.3e-27 126.7 251 33.1
unitig_26.g10298 Utricularia gibba HOM05D001860 ORTHO05D004922 4.3e-27 126.7 280 32.5
GSVIVG01019959001 Vitis vinifera HOM05D001860 ORTHO05D004922 4.3e-27 126.7 251 34.3
ATR0564G196 Amborella trichopoda HOM05D001860 ORTHO05D004922 5.6e-27 126.3 251 33.9
Aqoxy5G04114 Aquilegia oxysepala HOM05D001860 ORTHO05D004922 5.6e-27 126.3 251 33.9
BcaC08g46388 Brassica carinata HOM05D001860 ORTHO05D004922 5.6e-27 126.3 185 39.5
Phvul.002G083300 Phaseolus vulgaris HOM05D001860 ORTHO05D004922 5.6e-27 126.3 251 32.3
EL10Ac6g13236 Beta vulgaris HOM05D001860 ORTHO05D004922 7.3e-27 125.9 251 34.3
BolC6t39394H Brassica oleracea HOM05D001482 ORTHO05D001499 7.3e-27 125.9 185 40.0
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 9.5e-27 125.6 251 32.7
Hund25222 Selenicereus undatus HOM05D001860 ORTHO05D004922 9.5e-27 125.6 251 33.5
Aa31LG4G11250 Aethionema arabicum HOM05D001860 ORTHO05D004922 1.2e-26 125.2 246 33.3
QL03p068489 Quercus lobata HOM05D001860 ORTHO05D004922 1.2e-26 125.2 251 33.9
Ca_04822_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004922 1.6e-26 124.8 185 39.5
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.6e-26 124.8 251 33.1
SalBow2G3316 Salvia bowleyana HOM05D001860 ORTHO05D004922 2.1e-26 124.4 251 33.9
Sabra08G0066100 Salix brachista HOM05D001860 ORTHO05D004922 2.8e-26 124.0 283 31.4
ClCG05G024130 Citrullus lanatus HOM05D001860 ORTHO05D004922 3.6e-26 123.6 251 32.3
BcaB03g14714 Brassica carinata HOM05D001860 ORTHO05D004922 4.7e-26 123.2 185 38.9
Eucgr.B03211 Eucalyptus grandis HOM05D001860 ORTHO05D004922 4.7e-26 123.2 251 32.7
Lalb_Chr04g0255941 Lupinus albus HOM05D001860 ORTHO05D004922 4.7e-26 123.2 297 31.0
Sopen06g035410 Solanum pennellii HOM05D001860 ORTHO05D004922 4.7e-26 123.2 251 34.3
SGA_v2.0_scaffold172G38956 Striga asiatica HOM05D001860 ORTHO05D004922 4.7e-26 123.2 251 33.9
CANSAT64G2732 Cannabis sativa HOM05D001860 ORTHO05D004922 6.2e-26 122.9 189 37.0
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 6.2e-26 122.9 251 32.7
Lj3A1035T53 Lonicera japonica HOM05D001860 ORTHO05D004922 6.2e-26 122.9 189 38.1
MBI05_g10765_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004922 6.2e-26 122.9 306 27.8
TAR629G3174 Trochodendron aralioides HOM05D001860 ORTHO05D004922 6.2e-26 122.9 251 33.1
Carub.0002s1615 Capsella rubella HOM05D001860 ORTHO05D004922 8.1e-26 122.5 195 37.9
Migut.L01273 Erythranthe guttata HOM05D001860 ORTHO05D004922 8.1e-26 122.5 251 34.7
Solyc06g084030.3 Solanum lycopersicum HOM05D001860 ORTHO05D004922 8.1e-26 122.5 251 33.9
PGSC0003DMG400020063 Solanum tuberosum HOM05D001860 ORTHO05D004922 8.1e-26 122.5 251 33.5
A07p35850 Brassica napus HOM05D001860 ORTHO05D004922 1.1e-25 122.1 242 33.5
CsaV3_5G032900 Cucumis sativus L. HOM05D001860 ORTHO05D004922 1.4e-25 121.7 251 32.3
Oeu028270.1 Olea europaea HOM05D001860 ORTHO05D004922 1.4e-25 121.7 251 33.5
Sp5g24630 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.4e-25 121.7 242 32.2
BcaB03g14720 Brassica carinata HOM05D001860 ORTHO05D004922 1.8e-25 121.3 242 34.3
THA.LOC104822184 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 1.8e-25 121.3 252 32.9
Ciclev10032245m.g Citrus clementina HOM05D001860 ORTHO05D004922 2.3e-25 120.9 251 31.9
Zm00001eb194590 Zea mays HOM05D001860 ORTHO05D004922 2.3e-25 120.9 184 41.3
AL2G28650 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 3.1e-25 120.6 190 34.7
BcaC08g46392 Brassica carinata HOM05D001860 ORTHO05D004922 3.1e-25 120.6 242 33.1
BolC6t39399H Brassica oleracea HOM05D001860 ORTHO05D004922 3.1e-25 120.6 242 33.1
CARHR062460 Cardamine hirsuta HOM05D001860 ORTHO05D004922 3.1e-25 120.6 242 31.8
MELO3C012111.2 Cucumis melo HOM05D001860 ORTHO05D004922 3.1e-25 120.6 251 32.3
Nitab4.5_0001044g0130 Nicotiana tabacum HOM05D001860 ORTHO05D004922 3.1e-25 120.6 251 34.3
Nitab4.5_0006433g0040 Nicotiana tabacum HOM05D001860 ORTHO05D004922 3.1e-25 120.6 251 33.9
vmacro01268 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 3.1e-25 120.6 265 32.5
AT1G69523 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 4.0e-25 120.2 249 31.3
Rhsim12G0064600 Rhododendron simsii HOM05D001860 ORTHO05D004922 4.0e-25 120.2 251 32.3
C06p40330 Brassica napus HOM05D001860 ORTHO05D004922 5.2e-25 119.8 242 33.1
Carub.0002s1616 Capsella rubella HOM05D001860 ORTHO05D004922 5.2e-25 119.8 249 31.7
CAN.G771.16 Capsicum annuum HOM05D001860 ORTHO05D004922 5.2e-25 119.8 251 33.9
CDE04G1474 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 5.2e-25 119.8 255 32.2
Manes.05G104100 Manihot esculenta HOM05D001860 ORTHO05D004922 5.2e-25 119.8 252 33.3
BraA07t31171Z Brassica rapa HOM05D001860 ORTHO05D004922 6.8e-25 119.4 242 33.1
Carub.0002s1614 Capsella rubella HOM05D001860 ORTHO05D004922 6.8e-25 119.4 185 37.3
Thhalv10018913m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 8.9e-25 119.0 251 32.3
MELO3C012110.2 Cucumis melo HOM05D001860 ORTHO05D004922 1.2e-24 118.6 264 32.6
MD16G1070300 Malus domestica HOM05D001860 ORTHO05D004922 1.2e-24 118.6 189 40.2
PSO478G0757 Papaver somniferum HOM05D001860 ORTHO05D004922 1.5e-24 118.2 251 32.7
THA.LOC104822045 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 2.0e-24 117.9 260 32.3
CSS0022995 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 2.6e-24 117.5 251 32.7
arahy.Tifrunner.gnm1.ann1.F2WL4X Arachis hypogaea HOM05D001860 ORTHO05D004922 5.8e-24 116.3 280 30.7
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 5.8e-24 116.3 288 28.8
CsaV3_5G032890 Cucumis sativus L. HOM05D001860 ORTHO05D004922 5.8e-24 116.3 251 31.9
Thhalv10019583m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 7.5e-24 115.9 185 37.3
Sp5g24640 Schrenkiella parvula HOM05D001860 ORTHO05D004922 7.5e-24 115.9 185 37.3
SMO239G0167 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 7.5e-24 115.9 251 30.3
SEGI_35280 Sequoiadendron giganteum HOM05D001860 ORTHO05D004922 7.5e-24 115.9 251 31.9
AL2G28640 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 1.3e-23 115.2 185 36.8
AT1G69520 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 1.3e-23 115.2 192 37.0
CARHR062450 Cardamine hirsuta HOM05D001860 ORTHO05D004922 1.3e-23 115.2 185 37.8
Cc11_g12800 Coffea canephora HOM05D001860 ORTHO05D004922 1.3e-23 115.2 252 33.3
arahy.Tifrunner.gnm1.ann1.WF3EDY Arachis hypogaea HOM05D001860 ORTHO05D004922 2.2e-23 114.4 280 30.4
Carub.0002s1617 Capsella rubella HOM05D001860 ORTHO05D004922 2.9e-23 114.0 189 36.0
CDE06G2440 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 2.9e-23 114.0 251 30.7
Nn3g17288 Nelumbo nucifera HOM05D001860 ORTHO05D004922 3.7e-23 113.6 323 30.3
vmacro01267 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 4.9e-23 113.2 273 31.5
PSO017G0798 Papaver somniferum HOM05D001860 ORTHO05D004922 6.4e-23 112.8 251 32.3
AT1G69526 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 1.1e-22 112.1 190 35.8
FvH4_4g31120 Fragaria vesca HOM05D001860 ORTHO05D004922 1.1e-22 112.1 252 31.7
Sp5g24610 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.1e-22 112.1 185 36.8
C06p40380 Brassica napus HOM05D001482 ORTHO05D001499 1.4e-22 111.7 214 33.6
Lj2g0002858 Lotus japonicus HOM05D001860 ORTHO05D004922 2.4e-22 110.9 251 30.3
BraA07t30786Z Brassica rapa HOM05D001860 ORTHO05D004922 3.2e-22 110.5 185 35.1
Peaxi162Scf01530g00038 Petunia axillaris HOM05D001860 ORTHO05D004922 4.1e-22 110.2 189 37.6
CARHR062480 Cardamine hirsuta HOM05D001860 ORTHO05D004922 5.4e-22 109.8 190 34.7
BcaB03g15478 Brassica carinata HOM05D001860 ORTHO05D004922 7.1e-22 109.4 185 34.6
MSTRG.7790 Avicennia marina HOM05D001860 ORTHO05D004922 9.2e-22 109.0 379 28.8
BcaB03g14715 Brassica carinata HOM05D001860 ORTHO05D004922 9.2e-22 109.0 249 30.1
A07p35830 Brassica napus HOM05D001860 ORTHO05D004922 1.6e-21 108.2 248 30.2
BraA07t31169Z Brassica rapa HOM05D001860 ORTHO05D004922 1.6e-21 108.2 248 30.2
SMO137G0248 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 1.6e-21 108.2 182 36.8
THA.LOC104822044 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 1.6e-21 108.2 281 30.2
A07p35840 Brassica napus HOM05D001860 ORTHO05D004922 6.0e-21 106.3 248 29.8
BolC6t39396H Brassica oleracea HOM05D001860 ORTHO05D004922 6.0e-21 106.3 248 29.8
BolC6t39398H Brassica oleracea HOM05D001860 ORTHO05D004922 6.0e-21 106.3 248 29.8
BraA07t31170Z Brassica rapa HOM05D001860 ORTHO05D004922 6.0e-21 106.3 248 29.8
C06p40340 Brassica napus HOM05D001860 ORTHO05D004922 1.0e-20 105.5 248 29.8
C06p40360 Brassica napus HOM05D001860 ORTHO05D004922 2.3e-20 104.4 239 30.1
BcaC08g46390 Brassica carinata HOM05D001860 ORTHO05D004922 3.9e-20 103.6 189 32.3
Gohir.D13G076400 Gossypium hirsutum HOM05D001860 ORTHO05D004922 1.9e-19 101.3 211 31.3
PRCOL_00003589 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 3.3e-19 100.5 183 38.3
MCO03G556 Micromonas commoda HOM05D001860 ORTHO05D004922 4.3e-19 100.1 308 26.3
Gohir.A13G076700 Gossypium hirsutum HOM05D001860 ORTHO05D004922 1.2e-18 98.6 211 31.3
MCO09G753 Micromonas commoda HOM05D001860 ORTHO05D004922 2.8e-18 97.4 185 34.6
PRCOL_00000783 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 2.8e-18 97.4 264 33.3
Prupe.1G276900 Prunus persica HOM05D001860 ORTHO05D004922 4.0e-17 93.6 210 32.4
PGR102G3336 Punica granatum HOM05D001860 ORTHO05D004922 8.9e-17 92.4 211 29.9
Oeu028272.1 Olea europaea HOM05D001860 ORTHO05D004922 4.9e-15 86.7 91 50.5
FAN17G3114 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.9e-14 84.7 251 29.1
A07p31570 Brassica napus HOM05D001860 ORTHO05D004922 2.4e-14 84.3 91 46.2
MCO03G203 Micromonas commoda HOM05D023757 ORTHO05D024904 2.7e-13 80.9 183 34.4
C06p36870 Brassica napus HOM05D000005 ORTHO05D042562 3.5e-13 80.5 91 45.1
Sp5g24620 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.0e-12 79.0 92 45.7
Aa31LG4G11270 Aethionema arabicum HOM05D001860 ORTHO05D004922 1.3e-12 78.6 121 38.8
BcaC08g45887 Brassica carinata HOM05D001860 ORTHO05D004922 1.3e-12 78.6 96 42.7
C06p40370 Brassica napus HOM05D001860 ORTHO05D004922 1.7e-12 78.2 91 42.9
BolC6t38800H Brassica oleracea HOM05D000005 ORTHO05D042562 1.7e-12 78.2 91 44.0
CBR_g41443 Chara braunii HOM05D001860 ORTHO05D004922 2.5e-11 74.3 239 26.4
Sc11g0002060 Simmondsia chinensis HOM05D001860 ORTHO05D004922 5.2e-09 66.6 210 28.6
AUR62005816 Chenopodium quinoa HOM05D001860 ORTHO05D004922 4.4e-08 63.5 130 32.3
Dinv16666 Davidia involucrata HOM05D001860 ORTHO05D004922 1.7e-07 61.6 124 33.1
CSS0034144 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 4.9e-07 60.1 58 50.0
Cpa.g.sc350.4 Carica papaya HOM05D001860 ORTHO05D004922 1.1e-06 58.9 123 31.7
CSS0016207 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.4e-06 58.5 58 50.0
Cre15.g641875 Chlamydomonas reinhardtii HOM05D023757 ORTHO05D024904 1.4e-06 58.5 206 29.1
Cre12.g529350 Chlamydomonas reinhardtii HOM05D023757 ORTHO05D024904 2.4e-06 57.8 95 38.9
Cre05.g245450 Chlamydomonas reinhardtii HOM05D004714 ORTHO05D005614 3.2e-06 57.4 147 32.0
Ah.02g129590 Amaranthus hybridus HOM05D001860 ORTHO05D004922 5.4e-06 56.6 128 28.1
Thhalv10019188m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 5.4e-06 56.6 129 28.7


User provided reference genes

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